Wall clock time and date at job start Mon Mar 30 2020 02:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47323 * 2 1 4 4 C 1.50704 * 109.46695 * 119.99638 * 2 1 3 5 5 H 1.07998 * 119.99655 * 119.99885 * 4 2 1 6 6 C 1.37873 * 120.00301 * 299.99749 * 4 2 1 7 7 N 1.31513 * 120.00023 * 179.97438 * 6 4 2 8 8 Si 1.86809 * 119.99759 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.46886 * 89.99752 * 8 6 4 10 10 H 1.48494 * 109.46809 * 209.99894 * 8 6 4 11 11 H 1.48498 * 109.46903 * 329.99849 * 8 6 4 12 12 C 1.53001 * 109.47035 * 239.99539 * 2 1 3 13 13 H 1.08998 * 108.92195 * 298.70290 * 12 2 1 14 14 C 1.46285 * 108.86458 * 57.37192 * 12 2 1 15 15 C 1.54201 * 111.99186 * 182.06657 * 14 12 2 16 16 C 1.50627 * 109.06376 * 282.46245 * 15 14 12 17 17 C 1.53823 * 112.46131 * 90.32895 * 16 15 14 18 18 O 1.43989 * 113.41312 * 317.88696 * 17 16 15 19 19 C 1.40322 * 116.58525 * 317.89288 * 18 17 16 20 20 H 1.08995 * 109.47437 * 300.00759 * 1 2 3 21 21 H 1.09004 * 109.46829 * 60.00337 * 1 2 3 22 22 H 1.08994 * 109.47323 * 179.97438 * 1 2 3 23 23 H 0.96997 * 119.99592 * 179.97438 * 7 6 4 24 24 H 1.09002 * 108.97367 * 302.70495 * 14 12 2 25 25 H 1.08990 * 108.97888 * 61.41798 * 14 12 2 26 26 H 1.09003 * 109.54210 * 42.33550 * 15 14 12 27 27 H 1.08999 * 109.54182 * 162.50378 * 15 14 12 28 28 H 1.08998 * 108.88324 * 211.09730 * 16 15 14 29 29 H 1.09001 * 108.88335 * 329.66022 * 16 15 14 30 30 H 1.09001 * 108.69623 * 78.90743 * 17 16 15 31 31 H 1.09002 * 108.68953 * 197.00230 * 17 16 15 32 32 H 1.09002 * 109.59858 * 335.27485 * 19 18 17 33 33 H 1.08995 * 109.60021 * 214.80659 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6247 1.2793 2.6540 9 1 -0.8028 0.8729 2.6996 10 1 0.9759 1.9953 3.9066 11 1 0.8471 2.1766 1.4919 12 6 2.0400 -0.7214 -1.2492 13 1 1.6909 -1.7537 -1.2285 14 6 1.4940 -0.0592 -2.4338 15 6 1.9230 -0.7620 -3.7375 16 6 3.3452 -0.3819 -4.0563 17 6 4.3659 -1.3502 -3.4345 18 8 4.0429 -1.7327 -2.0844 19 6 3.5812 -0.7142 -1.2367 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.9031 -0.5278 4.4375 24 1 0.4057 -0.0619 -2.3713 25 1 1.8437 0.9728 -2.4559 26 1 1.8546 -1.8423 -3.6089 27 1 1.2696 -0.4498 -4.5522 28 1 3.4755 -0.3790 -5.1385 29 1 3.5359 0.6216 -3.6758 30 1 4.4151 -2.2486 -4.0499 31 1 5.3458 -0.8729 -3.4355 32 1 3.9452 0.2500 -1.5916 33 1 3.9394 -0.8921 -0.2227 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260339946.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:12 Heat of formation + Delta-G solvation = -61.556831 kcal Electronic energy + Delta-G solvation = -13495.170820 eV Core-core repulsion = 11327.433457 eV Total energy + Delta-G solvation = -2167.737362 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.16192 -35.70752 -33.75006 -31.97951 -29.67930 -26.72787 -25.27127 -24.33477 -21.21603 -20.13748 -18.99487 -16.81941 -16.10859 -15.44554 -14.96807 -14.62068 -13.60663 -13.12327 -12.98444 -12.86725 -12.63914 -12.13113 -11.78977 -11.60664 -11.07431 -10.72760 -10.54906 -10.35082 -10.18721 -9.97287 -9.88319 -9.62149 -9.19269 -8.90456 -8.65513 -8.43492 -6.01812 -4.00110 3.30411 3.40434 3.43113 4.36911 4.45613 4.94011 5.11109 5.28289 5.31207 5.47837 5.56689 5.72945 5.87813 5.94403 6.08684 6.18713 6.20035 6.30048 6.38197 6.50912 6.54749 6.63291 6.77414 6.88263 6.99236 7.08421 7.27038 7.58625 7.83477 7.99801 8.59059 9.03554 9.61285 11.11212 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051957 B = 0.010984 C = 0.009674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.779865 B = 2548.590306 C = 2893.603310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.012 3.988 3 H 0.024 0.976 4 C -0.511 4.511 5 H 0.078 0.922 6 C 0.067 3.933 7 N -0.902 5.902 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.300 1.300 11 H -0.268 1.268 12 C -0.098 4.098 13 H 0.069 0.931 14 C -0.117 4.117 15 C -0.117 4.117 16 C -0.152 4.152 17 C 0.063 3.937 18 O -0.386 6.386 19 C 0.075 3.925 20 H 0.035 0.965 21 H 0.031 0.969 22 H 0.050 0.950 23 H 0.262 0.738 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 2.368 -13.285 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.007 4.007 3 H 0.042 0.958 4 C -0.548 4.548 5 H 0.096 0.904 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.720 3.280 9 H -0.209 1.209 10 H -0.228 1.228 11 H -0.193 1.193 12 C -0.116 4.116 13 H 0.088 0.912 14 C -0.154 4.154 15 C -0.155 4.155 16 C -0.190 4.190 17 C -0.014 4.014 18 O -0.305 6.305 19 C -0.002 4.002 20 H 0.054 0.946 21 H 0.050 0.950 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.530 2.189 -13.028 13.222 hybrid contribution -0.742 1.160 0.154 1.386 sum -0.212 3.349 -12.875 13.305 Atomic orbital electron populations 1.22238 0.99563 1.00558 0.98223 1.19175 0.91537 0.96164 0.93818 0.95824 1.21119 1.31696 1.13433 0.88584 0.90384 1.25042 0.95759 0.96580 0.95982 1.69909 1.45921 1.40371 0.97871 0.86825 0.80600 0.83928 0.76602 1.20868 1.22785 1.19315 1.20510 0.95704 1.00702 0.94727 0.91237 1.20845 1.01150 0.99051 0.94341 1.21315 0.94984 1.01484 0.97709 1.21931 0.96335 1.00230 1.00468 1.22831 0.95913 0.98311 0.84308 1.87472 1.85725 1.37121 1.20216 1.22610 0.93608 0.89334 0.94604 0.94596 0.95046 0.93065 0.92804 0.91841 0.93016 0.91432 0.92588 0.91701 0.91924 0.90428 0.94061 0.94572 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.19 37.16 0.30 -2.94 16 2 C 0.01 0.28 1.46 -91.77 -0.13 0.14 16 3 H 0.02 0.57 7.20 -51.93 -0.37 0.19 16 4 C -0.51 -14.16 8.10 -34.44 -0.28 -14.44 16 5 H 0.08 2.35 7.14 -52.49 -0.37 1.97 16 6 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 7 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 8 Si 0.89 22.28 24.37 -169.99 -4.14 18.14 16 9 H -0.28 -6.92 6.87 56.52 0.39 -6.54 16 10 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 11 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 12 C -0.10 -1.95 1.49 -93.22 -0.14 -2.09 16 13 H 0.07 1.50 8.13 -51.93 -0.42 1.07 16 14 C -0.12 -1.94 4.27 -29.30 -0.13 -2.06 16 15 C -0.12 -1.65 5.62 -27.29 -0.15 -1.80 16 16 C -0.15 -1.95 5.33 -27.49 -0.15 -2.10 16 17 C 0.06 0.89 6.67 37.59 0.25 1.14 16 18 O -0.39 -7.19 10.17 -33.69 -0.34 -7.53 16 19 C 0.07 1.47 5.63 37.75 0.21 1.68 16 20 H 0.04 0.82 3.27 -51.93 -0.17 0.65 16 21 H 0.03 0.58 6.28 -51.93 -0.33 0.26 16 22 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.06 1.04 5.98 -51.93 -0.31 0.73 16 25 H 0.05 0.84 7.59 -51.93 -0.39 0.45 16 26 H 0.07 1.00 7.82 -51.93 -0.41 0.60 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.83 6.83 -51.93 -0.35 0.47 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.65 6.98 -51.93 -0.36 0.29 16 33 H 0.11 2.40 6.23 -51.93 -0.32 2.07 16 LS Contribution 243.68 15.07 3.67 3.67 Total: -1.00 -29.74 243.68 -5.46 -35.20 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -5.11 Total: -1.88 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -0.31 Total: -20.62 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.77 Total: -26.98 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.34 Total: -7.53 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.14 Total: 18.14 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.74 -5.46 -35.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260339946.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.355 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds