Wall clock time and date at job start Mon Mar 30 2020 02:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47323 * 2 1 4 4 C 1.50704 * 109.46695 * 119.99638 * 2 1 3 5 5 H 1.07998 * 119.99655 * 119.99885 * 4 2 1 6 6 C 1.37873 * 120.00301 * 299.99749 * 4 2 1 7 7 N 1.31513 * 120.00023 * 179.97438 * 6 4 2 8 8 Si 1.86809 * 119.99759 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.46886 * 89.99752 * 8 6 4 10 10 H 1.48494 * 109.46809 * 209.99894 * 8 6 4 11 11 H 1.48498 * 109.46903 * 329.99849 * 8 6 4 12 12 C 1.53001 * 109.47035 * 239.99539 * 2 1 3 13 13 H 1.08998 * 108.92195 * 298.70290 * 12 2 1 14 14 C 1.46285 * 108.86458 * 57.37192 * 12 2 1 15 15 C 1.54201 * 111.99186 * 182.06657 * 14 12 2 16 16 C 1.50627 * 109.06376 * 282.46245 * 15 14 12 17 17 C 1.53823 * 112.46131 * 90.32895 * 16 15 14 18 18 O 1.43989 * 113.41312 * 317.88696 * 17 16 15 19 19 C 1.40322 * 116.58525 * 317.89288 * 18 17 16 20 20 H 1.08995 * 109.47437 * 300.00759 * 1 2 3 21 21 H 1.09004 * 109.46829 * 60.00337 * 1 2 3 22 22 H 1.08994 * 109.47323 * 179.97438 * 1 2 3 23 23 H 0.96997 * 119.99592 * 179.97438 * 7 6 4 24 24 H 1.09002 * 108.97367 * 302.70495 * 14 12 2 25 25 H 1.08990 * 108.97888 * 61.41798 * 14 12 2 26 26 H 1.09003 * 109.54210 * 42.33550 * 15 14 12 27 27 H 1.08999 * 109.54182 * 162.50378 * 15 14 12 28 28 H 1.08998 * 108.88324 * 211.09730 * 16 15 14 29 29 H 1.09001 * 108.88335 * 329.66022 * 16 15 14 30 30 H 1.09001 * 108.69623 * 78.90743 * 17 16 15 31 31 H 1.09002 * 108.68953 * 197.00230 * 17 16 15 32 32 H 1.09002 * 109.59858 * 335.27485 * 19 18 17 33 33 H 1.08995 * 109.60021 * 214.80659 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6247 1.2793 2.6540 9 1 -0.8028 0.8729 2.6996 10 1 0.9759 1.9953 3.9066 11 1 0.8471 2.1766 1.4919 12 6 2.0400 -0.7214 -1.2492 13 1 1.6909 -1.7537 -1.2285 14 6 1.4940 -0.0592 -2.4338 15 6 1.9230 -0.7620 -3.7375 16 6 3.3452 -0.3819 -4.0563 17 6 4.3659 -1.3502 -3.4345 18 8 4.0429 -1.7327 -2.0844 19 6 3.5812 -0.7142 -1.2367 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.9031 -0.5278 4.4375 24 1 0.4057 -0.0619 -2.3713 25 1 1.8437 0.9728 -2.4559 26 1 1.8546 -1.8423 -3.6089 27 1 1.2696 -0.4498 -4.5522 28 1 3.4755 -0.3790 -5.1385 29 1 3.5359 0.6216 -3.6758 30 1 4.4151 -2.2486 -4.0499 31 1 5.3458 -0.8729 -3.4355 32 1 3.9452 0.2500 -1.5916 33 1 3.9394 -0.8921 -0.2227 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260339946.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:12 Heat of formation + Delta-G solvation = -81.226535 kcal Electronic energy + Delta-G solvation = -13496.023762 eV Core-core repulsion = 11327.433457 eV Total energy + Delta-G solvation = -2168.590305 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.57668 -37.33606 -35.18064 -33.89360 -31.29977 -28.25548 -26.88433 -25.95434 -22.90696 -21.27454 -20.67061 -18.81909 -17.54181 -17.04070 -16.55063 -16.13557 -15.04459 -14.82948 -14.69385 -14.27113 -14.09727 -13.88782 -13.22662 -13.14751 -12.73634 -12.44727 -12.08788 -11.91167 -11.65234 -11.45765 -11.38285 -11.24733 -10.93832 -10.73477 -10.69224 -10.10911 -8.25008 -6.27370 1.31874 1.36725 1.47849 2.35437 3.01882 3.14445 3.83500 4.04467 4.07660 4.14744 4.19546 4.43838 4.57270 4.67331 4.72523 4.78487 4.84108 4.89746 5.04326 5.07296 5.10709 5.26335 5.32460 5.35824 5.42531 5.50866 5.59236 5.79566 5.80271 6.38839 6.61878 6.80129 7.37128 8.91876 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051957 B = 0.010984 C = 0.009674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.779865 B = 2548.590306 C = 2893.603310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.009 3.991 3 H 0.026 0.974 4 C -0.509 4.509 5 H 0.034 0.966 6 C 0.005 3.995 7 N -0.954 5.954 8 Si 0.953 3.047 9 H -0.271 1.271 10 H -0.303 1.303 11 H -0.245 1.245 12 C -0.087 4.087 13 H 0.044 0.956 14 C -0.117 4.117 15 C -0.113 4.113 16 C -0.149 4.149 17 C 0.051 3.949 18 O -0.411 6.411 19 C 0.083 3.917 20 H 0.026 0.974 21 H 0.070 0.930 22 H 0.045 0.955 23 H 0.263 0.737 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.535 4.146 -16.003 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.010 4.010 3 H 0.044 0.956 4 C -0.547 4.547 5 H 0.052 0.948 6 C -0.191 4.191 7 N -0.595 5.595 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.231 1.231 11 H -0.168 1.168 12 C -0.106 4.106 13 H 0.063 0.937 14 C -0.154 4.154 15 C -0.151 4.151 16 C -0.187 4.187 17 C -0.024 4.024 18 O -0.331 6.331 19 C 0.007 3.993 20 H 0.044 0.956 21 H 0.089 0.911 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.508 3.965 -15.784 16.282 hybrid contribution -0.311 0.485 0.947 1.109 sum -0.819 4.450 -14.836 15.511 Atomic orbital electron populations 1.22171 0.97838 1.00755 0.99617 1.19187 0.92933 0.95755 0.93098 0.95640 1.21412 1.30345 1.12089 0.90818 0.94798 1.25934 0.97494 1.00088 0.95562 1.70073 1.48201 1.42710 0.98531 0.85781 0.78904 0.80140 0.77099 1.19737 1.23097 1.16837 1.20400 0.95808 0.99256 0.95171 0.93715 1.20808 1.01337 0.99367 0.93903 1.21290 0.96338 1.00418 0.97015 1.21926 0.94939 0.99412 1.02384 1.23172 0.97139 1.00019 0.82102 1.87423 1.85801 1.37329 1.22530 1.22286 0.93512 0.90358 0.93182 0.95557 0.91116 0.93622 0.92823 0.91175 0.92006 0.92699 0.89727 0.88394 0.91949 0.88609 0.92781 0.92748 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.07 8.19 71.98 0.59 -5.48 16 2 C 0.01 0.42 1.46 -11.54 -0.02 0.40 16 3 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 4 C -0.51 -29.19 8.10 25.60 0.21 -28.98 16 5 H 0.03 2.18 7.14 -2.91 -0.02 2.16 16 6 C 0.01 0.31 5.45 84.65 0.46 0.77 16 7 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 8 Si 0.95 45.75 24.37 68.60 1.67 47.42 16 9 H -0.27 -12.48 6.87 99.48 0.68 -11.79 16 10 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 11 H -0.24 -10.72 6.53 99.48 0.65 -10.07 16 12 C -0.09 -3.45 1.49 -12.48 -0.02 -3.47 16 13 H 0.04 1.96 8.13 -2.39 -0.02 1.94 16 14 C -0.12 -3.52 4.27 28.93 0.12 -3.40 16 15 C -0.11 -2.76 5.62 30.23 0.17 -2.59 16 16 C -0.15 -3.24 5.33 30.10 0.16 -3.08 16 17 C 0.05 1.32 6.67 72.26 0.48 1.81 16 18 O -0.41 -15.22 10.17 -143.45 -1.46 -16.68 16 19 C 0.08 3.31 5.63 72.36 0.41 3.71 16 20 H 0.03 1.13 3.27 -2.39 -0.01 1.12 16 21 H 0.07 2.36 6.28 -2.38 -0.01 2.35 16 22 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 24 H 0.07 2.01 5.98 -2.39 -0.01 2.00 16 25 H 0.06 1.76 7.59 -2.39 -0.02 1.74 16 26 H 0.05 1.49 7.82 -2.39 -0.02 1.47 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.39 6.83 -2.39 -0.02 1.37 16 30 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.90 6.98 -2.39 -0.02 1.89 16 33 H 0.06 3.04 6.23 -2.39 -0.01 3.02 16 Total: -1.00 -66.49 243.68 4.07 -62.42 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 0.99 Total: 7.82 kcal Atomic # 6 Polarization: -42.87 SS G_CDS: 2.57 Total: -40.30 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 0.30 Total: -60.68 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -1.46 Total: -16.68 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.67 Total: 47.42 kcal Total: -66.49 4.07 -62.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260339946.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.803 kcal (2) G-P(sol) polarization free energy of solvation -66.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds