Wall clock time and date at job start Mon Mar 30 2020 02:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47106 * 2 1 4 4 C 1.50694 * 109.47355 * 120.00049 * 2 1 3 5 5 H 1.08000 * 120.00563 * 120.00152 * 4 2 1 6 6 C 1.37885 * 119.99902 * 299.99988 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48498 * 109.46909 * 90.00086 * 8 6 4 10 10 H 1.48497 * 109.46701 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00101 * 8 6 4 12 12 C 1.53001 * 109.47124 * 240.00250 * 2 1 3 13 13 H 1.09005 * 109.01489 * 301.07083 * 12 2 1 14 14 C 1.54276 * 109.02868 * 182.21504 * 12 2 1 15 15 C 1.50291 * 108.49709 * 161.39353 * 14 12 2 16 16 C 1.54617 * 112.95060 * 92.08551 * 15 14 12 17 17 C 1.54346 * 111.44970 * 318.99997 * 16 15 14 18 18 O 1.39974 * 112.57275 * 319.32062 * 17 16 15 19 19 C 1.44225 * 112.36560 * 97.12674 * 18 17 16 20 20 H 1.08995 * 109.47131 * 299.99885 * 1 2 3 21 21 H 1.08998 * 109.47544 * 60.00332 * 1 2 3 22 22 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 23 23 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 24 24 H 1.08996 * 109.62970 * 281.09317 * 14 12 2 25 25 H 1.08995 * 109.63066 * 41.69468 * 14 12 2 26 26 H 1.08998 * 108.78902 * 331.18799 * 15 14 12 27 27 H 1.08998 * 108.69526 * 212.91480 * 15 14 12 28 28 H 1.08998 * 109.08386 * 198.49423 * 16 15 14 29 29 H 1.08995 * 109.08289 * 79.50826 * 16 15 14 30 30 H 1.08996 * 108.86431 * 198.52283 * 17 16 15 31 31 H 1.08997 * 108.78366 * 80.05848 * 17 16 15 32 32 H 1.09004 * 108.95129 * 156.72312 * 19 18 17 33 33 H 1.09001 * 108.88643 * 38.02780 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3157 -1.1244 4.0079 9 1 3.6257 -0.5555 4.4148 10 1 1.3365 -0.9506 5.1107 11 1 2.4749 -2.5706 3.7106 12 6 2.0400 -0.7212 -1.2493 13 1 1.6569 -1.7417 -1.2515 14 6 3.5817 -0.7642 -1.2111 15 6 4.0523 -1.8345 -2.1554 16 6 4.3431 -1.2994 -3.5766 17 6 3.2743 -0.2804 -4.0256 18 8 1.9794 -0.6615 -3.6552 19 6 1.5481 -0.0256 -2.4347 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 0.7088 1.1613 3.4844 24 1 3.9827 0.2005 -1.5218 25 1 3.9166 -0.9950 -0.1999 26 1 3.2858 -2.6067 -2.2210 27 1 4.9635 -2.2784 -1.7543 28 1 4.3551 -2.1350 -4.2764 29 1 5.3204 -0.8169 -3.5827 30 1 3.3157 -0.1811 -5.1102 31 1 3.4996 0.6861 -3.5748 32 1 0.4584 -0.0101 -2.4095 33 1 1.9168 1.0001 -2.4219 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260339949.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:14 Heat of formation + Delta-G solvation = -68.173129 kcal Electronic energy + Delta-G solvation = -13451.427559 eV Core-core repulsion = 11283.403293 eV Total energy + Delta-G solvation = -2168.024266 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.22012 -35.46528 -33.54216 -32.05440 -29.00060 -26.43861 -25.43146 -24.13971 -21.57778 -19.53141 -19.12660 -16.60165 -15.93140 -15.46926 -14.67772 -14.25456 -14.02124 -13.01211 -12.73069 -12.61663 -12.16107 -11.86526 -11.71261 -10.99986 -10.87013 -10.66877 -10.58907 -10.25348 -10.12472 -9.98000 -9.80280 -9.46443 -9.42915 -8.82237 -8.58550 -8.28613 -5.95837 -4.01057 3.31146 3.38218 3.41461 4.35362 4.47190 5.22666 5.28534 5.33714 5.38483 5.60864 5.74813 5.86147 5.99364 6.03832 6.14087 6.29014 6.34052 6.55661 6.72704 6.72923 6.81807 6.91311 7.13977 7.15962 7.24061 7.38558 7.74164 7.76320 8.01018 8.18647 8.49213 9.01726 9.63006 11.10140 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049751 B = 0.010410 C = 0.009031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.673035 B = 2688.969287 C = 3099.663348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 H 0.024 0.976 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.888 3.112 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.111 4.111 13 H 0.063 0.937 14 C -0.110 4.110 15 C -0.115 4.115 16 C -0.145 4.145 17 C 0.063 3.937 18 O -0.381 6.381 19 C 0.065 3.935 20 H 0.082 0.918 21 H 0.009 0.991 22 H 0.026 0.974 23 H 0.259 0.741 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 -1.612 -8.896 9.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.031 3.969 3 H 0.042 0.958 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.129 4.129 13 H 0.081 0.919 14 C -0.147 4.147 15 C -0.153 4.153 16 C -0.183 4.183 17 C -0.015 4.015 18 O -0.299 6.299 19 C -0.011 4.011 20 H 0.100 0.900 21 H 0.028 0.972 22 H 0.045 0.955 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.863 -1.633 -8.858 9.800 hybrid contribution 0.522 -0.300 1.097 1.251 sum 4.385 -1.933 -7.761 9.121 Atomic orbital electron populations 1.21906 0.98960 0.99038 1.00028 1.18672 0.92290 0.95492 0.90468 0.95770 1.21190 1.30630 1.12121 0.90398 0.92435 1.24975 0.95217 0.95059 0.98924 1.69889 1.36918 1.23150 1.23149 0.86660 0.78518 0.80168 0.83044 1.20814 1.21336 1.19971 1.20781 0.95152 1.00890 0.96108 0.91889 1.21358 0.95922 0.97323 1.00124 1.21367 1.00574 0.99460 0.93902 1.22625 0.98462 0.99520 0.97709 1.22199 0.84091 0.96650 0.98574 1.87706 1.29474 1.70711 1.42019 1.21889 1.00128 0.95037 0.83998 0.89961 0.97237 0.95528 0.93150 0.93397 0.89740 0.92150 0.93278 0.92418 0.92111 0.91516 0.93490 0.89465 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.56 37.16 0.32 -3.08 16 2 C 0.05 1.21 1.87 -91.77 -0.17 1.04 16 3 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.51 -13.57 7.55 -34.44 -0.26 -13.83 16 5 H 0.06 1.53 6.71 -52.49 -0.35 1.18 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.45 11.32 55.43 0.63 -24.82 16 8 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 C -0.11 -2.29 1.53 -93.28 -0.14 -2.43 16 13 H 0.06 1.38 7.53 -51.93 -0.39 0.99 16 14 C -0.11 -2.10 4.84 -27.41 -0.13 -2.23 16 15 C -0.12 -1.90 5.47 -27.23 -0.15 -2.05 16 16 C -0.15 -2.05 6.26 -25.18 -0.16 -2.21 16 17 C 0.06 0.93 6.09 37.86 0.23 1.16 16 18 O -0.38 -6.78 10.35 -32.86 -0.34 -7.12 16 19 C 0.06 1.21 5.07 33.83 0.17 1.38 16 20 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 21 H 0.01 0.19 6.37 -51.93 -0.33 -0.14 16 22 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 23 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.05 0.88 7.07 -51.93 -0.37 0.51 16 25 H 0.08 1.78 6.08 -51.93 -0.32 1.46 16 26 H 0.06 1.05 7.33 -51.93 -0.38 0.67 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.69 6.53 -51.93 -0.34 0.35 16 32 H 0.09 1.62 6.13 -51.93 -0.32 1.30 16 33 H 0.04 0.80 7.34 -51.93 -0.38 0.42 16 LS Contribution 249.40 15.07 3.76 3.76 Total: -1.00 -27.87 249.40 -6.53 -34.40 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -5.16 Total: -1.71 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -0.39 Total: -20.74 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.63 Total: -24.82 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.34 Total: -7.12 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.87 -6.53 -34.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260339949.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.778 kcal (2) G-P(sol) polarization free energy of solvation -27.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds