Wall clock time and date at job start Mon Mar 30 2020 02:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47106 * 2 1 4 4 C 1.50694 * 109.47355 * 120.00049 * 2 1 3 5 5 H 1.08000 * 120.00563 * 120.00152 * 4 2 1 6 6 C 1.37885 * 119.99902 * 299.99988 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48498 * 109.46909 * 90.00086 * 8 6 4 10 10 H 1.48497 * 109.46701 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00101 * 8 6 4 12 12 C 1.53001 * 109.47124 * 240.00250 * 2 1 3 13 13 H 1.09005 * 109.01489 * 301.07083 * 12 2 1 14 14 C 1.54276 * 109.02868 * 182.21504 * 12 2 1 15 15 C 1.50291 * 108.49709 * 161.39353 * 14 12 2 16 16 C 1.54617 * 112.95060 * 92.08551 * 15 14 12 17 17 C 1.54346 * 111.44970 * 318.99997 * 16 15 14 18 18 O 1.39974 * 112.57275 * 319.32062 * 17 16 15 19 19 C 1.44225 * 112.36560 * 97.12674 * 18 17 16 20 20 H 1.08995 * 109.47131 * 299.99885 * 1 2 3 21 21 H 1.08998 * 109.47544 * 60.00332 * 1 2 3 22 22 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 23 23 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 24 24 H 1.08996 * 109.62970 * 281.09317 * 14 12 2 25 25 H 1.08995 * 109.63066 * 41.69468 * 14 12 2 26 26 H 1.08998 * 108.78902 * 331.18799 * 15 14 12 27 27 H 1.08998 * 108.69526 * 212.91480 * 15 14 12 28 28 H 1.08998 * 109.08386 * 198.49423 * 16 15 14 29 29 H 1.08995 * 109.08289 * 79.50826 * 16 15 14 30 30 H 1.08996 * 108.86431 * 198.52283 * 17 16 15 31 31 H 1.08997 * 108.78366 * 80.05848 * 17 16 15 32 32 H 1.09004 * 108.95129 * 156.72312 * 19 18 17 33 33 H 1.09001 * 108.88643 * 38.02780 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3157 -1.1244 4.0079 9 1 3.6257 -0.5555 4.4148 10 1 1.3365 -0.9506 5.1107 11 1 2.4749 -2.5706 3.7106 12 6 2.0400 -0.7212 -1.2493 13 1 1.6569 -1.7417 -1.2515 14 6 3.5817 -0.7642 -1.2111 15 6 4.0523 -1.8345 -2.1554 16 6 4.3431 -1.2994 -3.5766 17 6 3.2743 -0.2804 -4.0256 18 8 1.9794 -0.6615 -3.6552 19 6 1.5481 -0.0256 -2.4347 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 0.7088 1.1613 3.4844 24 1 3.9827 0.2005 -1.5218 25 1 3.9166 -0.9950 -0.1999 26 1 3.2858 -2.6067 -2.2210 27 1 4.9635 -2.2784 -1.7543 28 1 4.3551 -2.1350 -4.2764 29 1 5.3204 -0.8169 -3.5827 30 1 3.3157 -0.1811 -5.1102 31 1 3.4996 0.6861 -3.5748 32 1 0.4584 -0.0101 -2.4095 33 1 1.9168 1.0001 -2.4219 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260339949.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:13 Heat of formation + Delta-G solvation = -84.005332 kcal Electronic energy + Delta-G solvation = -13452.114095 eV Core-core repulsion = 11283.403293 eV Total energy + Delta-G solvation = -2168.710802 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.66990 -37.16825 -34.99918 -33.90719 -30.69057 -28.10482 -27.09555 -25.75783 -23.23893 -20.91905 -20.83599 -18.51234 -17.37727 -17.05175 -16.44412 -15.74010 -15.44052 -14.71324 -14.41744 -14.12906 -13.72179 -13.61091 -13.21432 -12.87131 -12.63021 -12.41536 -12.22394 -12.12556 -11.78074 -11.44475 -11.29591 -11.17382 -11.02200 -10.57191 -10.42864 -10.22503 -8.05810 -6.17276 1.40671 1.42304 1.51594 2.44484 3.04875 3.21821 3.87016 4.07527 4.14106 4.27058 4.32624 4.48723 4.63893 4.70434 4.78970 4.93344 4.97321 5.00393 5.01442 5.22600 5.28074 5.28142 5.40564 5.44228 5.55139 5.61211 5.69511 5.99482 6.15374 6.40093 6.46461 6.92783 7.49701 8.98993 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049751 B = 0.010410 C = 0.009031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.673035 B = 2688.969287 C = 3099.663348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.047 3.953 3 H -0.002 1.002 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.920 5.920 8 Si 0.948 3.052 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.270 1.270 12 C -0.100 4.100 13 H 0.048 0.952 14 C -0.106 4.106 15 C -0.114 4.114 16 C -0.140 4.140 17 C 0.051 3.949 18 O -0.389 6.389 19 C 0.071 3.929 20 H 0.054 0.946 21 H 0.035 0.965 22 H 0.023 0.977 23 H 0.259 0.741 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.086 -2.137 -9.981 11.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.029 3.971 3 H 0.017 0.983 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.775 3.225 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.195 1.195 12 C -0.119 4.119 13 H 0.067 0.933 14 C -0.143 4.143 15 C -0.152 4.152 16 C -0.178 4.178 17 C -0.027 4.027 18 O -0.308 6.308 19 C -0.004 4.004 20 H 0.072 0.928 21 H 0.054 0.946 22 H 0.043 0.957 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.887 -2.165 -9.955 11.299 hybrid contribution 0.222 -0.127 1.399 1.422 sum 5.109 -2.292 -8.557 10.226 Atomic orbital electron populations 1.21770 0.98695 0.98764 0.99922 1.18634 0.92558 0.94200 0.91732 0.98340 1.21511 1.30367 1.12064 0.91574 0.92708 1.25713 0.95554 0.95823 1.01780 1.70019 1.37941 1.24369 1.23654 0.85703 0.78039 0.79212 0.79592 1.20235 1.21180 1.19455 1.20635 0.96288 0.99605 0.95375 0.93327 1.21269 0.94693 0.98732 0.99622 1.21308 1.00616 0.98158 0.95079 1.22609 0.99188 1.00015 0.95996 1.22496 0.82921 0.96914 1.00344 1.87696 1.31213 1.70868 1.40977 1.21681 1.00035 0.94994 0.83731 0.92751 0.94622 0.95742 0.93231 0.92728 0.92238 0.93505 0.91961 0.90946 0.89985 0.88728 0.93292 0.89631 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 8.56 71.98 0.62 -5.86 16 2 C 0.05 2.35 1.87 -11.54 -0.02 2.32 16 3 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 4 C -0.52 -28.12 7.55 25.60 0.19 -27.92 16 5 H 0.05 2.94 6.71 -2.91 -0.02 2.92 16 6 C 0.01 0.51 5.30 84.66 0.45 0.96 16 7 N -0.92 -53.29 11.32 21.45 0.24 -53.05 16 8 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 12 C -0.10 -4.13 1.53 -12.52 -0.02 -4.15 16 13 H 0.05 2.12 7.53 -2.38 -0.02 2.11 16 14 C -0.11 -3.96 4.84 30.15 0.15 -3.82 16 15 C -0.11 -3.54 5.47 30.27 0.17 -3.37 16 16 C -0.14 -3.49 6.26 31.60 0.20 -3.30 16 17 C 0.05 1.34 6.09 72.44 0.44 1.78 16 18 O -0.39 -12.99 10.35 -140.49 -1.45 -14.45 16 19 C 0.07 2.57 5.07 69.83 0.35 2.92 16 20 H 0.05 2.94 6.07 -2.39 -0.01 2.92 16 21 H 0.03 1.49 6.37 -2.39 -0.02 1.47 16 22 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 23 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 24 H 0.05 1.94 7.07 -2.39 -0.02 1.92 16 25 H 0.06 2.50 6.08 -2.39 -0.01 2.49 16 26 H 0.05 1.57 7.33 -2.39 -0.02 1.55 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.29 6.53 -2.39 -0.02 1.27 16 32 H 0.09 3.08 6.13 -2.39 -0.01 3.07 16 33 H 0.05 1.75 7.34 -2.39 -0.02 1.74 16 Total: -1.00 -58.97 249.40 4.41 -54.56 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.07 Total: 7.51 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 2.52 Total: -40.42 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.24 Total: -53.05 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -1.45 Total: -14.45 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -58.97 4.41 -54.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260339949.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.442 kcal (2) G-P(sol) polarization free energy of solvation -58.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds