Wall clock time and date at job start Mon Mar 30 2020 02:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46839 * 2 1 4 4 C 1.50702 * 109.46898 * 240.00215 * 2 1 3 5 5 H 1.08001 * 119.99335 * 239.99672 * 4 2 1 6 6 C 1.37875 * 120.00086 * 59.99841 * 4 2 1 7 7 N 1.31514 * 119.99783 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99990 * 0.27278 * 6 4 2 9 9 H 1.48501 * 109.47032 * 269.72578 * 8 6 4 10 10 H 1.48492 * 109.47086 * 29.72617 * 8 6 4 11 11 H 1.48498 * 109.46933 * 149.72634 * 8 6 4 12 12 C 1.52999 * 109.47471 * 119.99891 * 2 1 3 13 13 H 1.08997 * 108.91647 * 58.83212 * 12 2 1 14 14 C 1.46279 * 108.93892 * 177.53800 * 12 2 1 15 15 C 1.54198 * 111.99580 * 182.11425 * 14 12 2 16 16 C 1.50624 * 109.06300 * 282.46678 * 15 14 12 17 17 C 1.53820 * 112.46063 * 90.33168 * 16 15 14 18 18 O 1.43991 * 113.40926 * 317.87790 * 17 16 15 19 19 C 1.40311 * 116.59080 * 317.89682 * 18 17 16 20 20 H 1.09001 * 109.47067 * 306.69771 * 1 2 3 21 21 H 1.09002 * 109.47642 * 66.70381 * 1 2 3 22 22 H 1.09001 * 109.46963 * 186.70605 * 1 2 3 23 23 H 0.96999 * 119.99899 * 179.97438 * 7 6 4 24 24 H 1.09001 * 108.97539 * 302.76426 * 14 12 2 25 25 H 1.08999 * 108.97656 * 61.46820 * 14 12 2 26 26 H 1.09002 * 109.53587 * 42.34145 * 15 14 12 27 27 H 1.09001 * 109.54076 * 162.58757 * 15 14 12 28 28 H 1.09004 * 108.87764 * 211.09173 * 16 15 14 29 29 H 1.08989 * 108.88822 * 329.65761 * 16 15 14 30 30 H 1.08997 * 108.69773 * 78.89962 * 17 16 15 31 31 H 1.09005 * 108.68985 * 196.86836 * 17 16 15 32 32 H 1.08999 * 109.60065 * 335.27496 * 19 18 17 33 33 H 1.08999 * 109.60109 * 214.80709 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 2.1371 -0.8596 -3.5566 8 14 0.6315 1.2839 -2.6541 9 1 -0.7977 0.8837 -2.7033 10 1 0.8551 2.1786 -1.4902 11 1 0.9883 2.0003 -3.9049 12 6 2.0401 -0.7212 1.2492 13 1 1.6548 -1.7408 1.2507 14 6 3.5016 -0.7661 1.2080 15 6 4.0903 -1.5268 2.4132 16 6 4.0511 -0.6337 3.6255 17 6 2.7450 -0.7840 4.4241 18 8 1.5723 -0.8658 3.5927 19 6 1.5150 0.0117 2.4993 20 1 -0.3633 0.6141 0.8240 21 1 -0.3634 0.4064 -0.9439 22 1 -0.3633 -1.0207 0.1200 23 1 1.9025 -0.5284 -4.4375 24 1 3.8153 -1.2610 0.2889 25 1 3.8877 0.2533 1.2094 26 1 3.5001 -2.4236 2.6018 27 1 5.1219 -1.8062 2.1994 28 1 4.8915 -0.8820 4.2738 29 1 4.1487 0.4029 3.3034 30 1 2.8078 -1.6880 5.0298 31 1 2.6422 0.0730 5.0899 32 1 2.1359 0.8852 2.6986 33 1 0.4837 0.3234 2.3342 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260339951.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:15 Heat of formation + Delta-G solvation = -80.791501 kcal Electronic energy + Delta-G solvation = -13489.976430 eV Core-core repulsion = 11321.404990 eV Total energy + Delta-G solvation = -2168.571440 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.58111 -37.28918 -35.15100 -34.00485 -31.35037 -28.00194 -27.12638 -25.95638 -22.82199 -21.24267 -20.69810 -18.97585 -17.44016 -17.31195 -16.16812 -16.12339 -15.22384 -14.80641 -14.59640 -14.43514 -14.10922 -13.97268 -13.13939 -13.05831 -12.74313 -12.57362 -12.00483 -11.89756 -11.62121 -11.48345 -11.44942 -11.19527 -11.02842 -10.81403 -10.62190 -10.07557 -8.25345 -6.27431 1.31955 1.36815 1.47812 2.35401 3.02516 3.10103 3.82905 4.06002 4.06660 4.16296 4.19748 4.42223 4.58594 4.62762 4.68927 4.74874 4.86144 4.88763 4.94699 5.07649 5.15029 5.23819 5.31895 5.33078 5.42300 5.55588 5.68065 5.79110 5.80873 6.37654 6.57957 6.79553 7.36909 8.91210 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053646 B = 0.010776 C = 0.009608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.813205 B = 2597.666502 C = 2913.612486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.009 3.991 3 H 0.026 0.974 4 C -0.505 4.505 5 H 0.036 0.964 6 C 0.004 3.996 7 N -0.955 5.955 8 Si 0.951 3.049 9 H -0.270 1.270 10 H -0.244 1.244 11 H -0.303 1.303 12 C -0.089 4.089 13 H 0.045 0.955 14 C -0.107 4.107 15 C -0.113 4.113 16 C -0.148 4.148 17 C 0.056 3.944 18 O -0.404 6.404 19 C 0.075 3.925 20 H 0.067 0.933 21 H 0.027 0.973 22 H 0.047 0.953 23 H 0.263 0.737 24 H 0.041 0.959 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.751 3.712 15.326 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.010 4.010 3 H 0.044 0.956 4 C -0.544 4.544 5 H 0.054 0.946 6 C -0.191 4.191 7 N -0.596 5.596 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.168 1.168 11 H -0.231 1.231 12 C -0.108 4.108 13 H 0.063 0.937 14 C -0.144 4.144 15 C -0.151 4.151 16 C -0.186 4.186 17 C -0.019 4.019 18 O -0.323 6.323 19 C -0.002 4.002 20 H 0.086 0.914 21 H 0.045 0.955 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.625 3.589 15.206 15.637 hybrid contribution -0.095 0.404 -1.120 1.194 sum 0.531 3.993 14.087 14.651 Atomic orbital electron populations 1.22192 0.98016 1.01034 0.99327 1.19192 0.92766 0.95853 0.93158 0.95637 1.21398 1.30191 1.12084 0.90682 0.94574 1.25922 0.97538 1.00100 0.95584 1.70064 1.48237 1.42795 0.98507 0.85803 0.78916 0.80180 0.77197 1.19695 1.16753 1.23131 1.20468 0.96158 0.99291 0.94846 0.93654 1.20585 0.95710 0.99995 0.98137 1.21285 1.00675 0.98666 0.94473 1.21918 0.98761 1.00403 0.97497 1.23128 0.84003 1.02942 0.91860 1.87395 1.41650 1.62120 1.41167 1.22509 1.01567 0.91616 0.84528 0.91424 0.95489 0.93382 0.92849 0.94024 0.92923 0.92563 0.91312 0.88649 0.91917 0.88571 0.91819 0.92355 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.20 8.20 71.98 0.59 -5.61 16 2 C 0.01 0.42 1.46 -11.54 -0.02 0.40 16 3 H 0.03 1.17 7.19 -2.39 -0.02 1.15 16 4 C -0.51 -28.84 8.33 25.60 0.21 -28.62 16 5 H 0.04 2.29 6.70 -2.91 -0.02 2.27 16 6 C 0.00 0.26 5.45 84.65 0.46 0.72 16 7 N -0.95 -60.77 13.96 21.45 0.30 -60.48 16 8 Si 0.95 45.69 24.43 68.60 1.68 47.36 16 9 H -0.27 -12.47 6.82 99.48 0.68 -11.79 16 10 H -0.24 -10.69 6.52 99.48 0.65 -10.04 16 11 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 12 C -0.09 -3.51 1.49 -12.48 -0.02 -3.52 16 13 H 0.04 1.98 8.13 -2.39 -0.02 1.96 16 14 C -0.11 -4.04 4.37 28.93 0.13 -3.92 16 15 C -0.11 -3.34 5.62 30.23 0.17 -3.17 16 16 C -0.15 -3.39 5.32 30.10 0.16 -3.22 16 17 C 0.06 1.29 6.67 72.26 0.48 1.77 16 18 O -0.40 -12.45 10.17 -143.37 -1.46 -13.91 16 19 C 0.07 2.39 5.68 72.36 0.41 2.80 16 20 H 0.07 2.30 6.35 -2.39 -0.02 2.28 16 21 H 0.03 1.18 3.24 -2.39 -0.01 1.17 16 22 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 24 H 0.04 1.88 6.12 -2.39 -0.01 1.87 16 25 H 0.05 1.91 7.60 -2.39 -0.02 1.90 16 26 H 0.06 1.75 7.82 -2.39 -0.02 1.73 16 27 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.06 1.46 6.83 -2.39 -0.02 1.44 16 30 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.06 1.68 6.98 -2.39 -0.02 1.66 16 33 H 0.09 2.77 5.74 -2.39 -0.01 2.76 16 Total: -1.00 -65.57 243.30 4.08 -61.49 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 0.99 Total: 7.91 kcal Atomic # 6 Polarization: -44.96 SS G_CDS: 2.58 Total: -42.38 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.30 Total: -60.48 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -1.46 Total: -13.91 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.68 Total: 47.36 kcal Total: -65.57 4.08 -61.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260339951.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.303 kcal (2) G-P(sol) polarization free energy of solvation -65.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds