Wall clock time and date at job start Mon Mar 30 2020 02:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47100 * 2 1 4 4 H 1.09005 * 109.47252 * 181.39611 * 3 2 1 5 5 C 1.53009 * 109.46722 * 61.40538 * 3 2 1 6 6 C 1.50692 * 109.47295 * 64.99976 * 5 3 2 7 7 H 1.08010 * 120.00255 * 359.97438 * 6 5 3 8 8 C 1.37876 * 120.00121 * 180.02562 * 6 5 3 9 9 N 1.31516 * 120.00163 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99892 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47214 * 90.00193 * 10 8 6 12 12 H 1.48501 * 109.46991 * 210.00176 * 10 8 6 13 13 H 1.48502 * 109.46778 * 330.00016 * 10 8 6 14 14 C 1.52995 * 109.47781 * 301.40202 * 3 2 1 15 15 H 1.09004 * 110.43352 * 62.92062 * 14 3 2 16 16 C 1.54810 * 110.48819 * 300.37773 * 14 3 2 17 17 C 1.55221 * 101.98774 * 220.51553 * 16 14 3 18 18 O 1.44382 * 103.56820 * 36.87760 * 17 16 14 19 19 C 1.43744 * 106.97592 * 320.01588 * 18 17 16 20 20 H 1.08998 * 109.47122 * 178.06041 * 1 2 3 21 21 H 1.08994 * 109.47135 * 298.06053 * 1 2 3 22 22 H 1.09001 * 109.47054 * 58.06701 * 1 2 3 23 23 H 1.09012 * 109.47106 * 240.00737 * 2 1 3 24 24 H 1.08999 * 109.47157 * 120.00466 * 2 1 3 25 25 H 1.08996 * 109.46712 * 304.99236 * 5 3 2 26 26 H 1.09001 * 109.46593 * 184.99604 * 5 3 2 27 27 H 0.96996 * 120.00032 * 180.02562 * 9 8 6 28 28 H 1.08994 * 110.90561 * 338.64051 * 16 14 3 29 29 H 1.09002 * 110.90769 * 102.23843 * 16 14 3 30 30 H 1.09006 * 110.52151 * 278.38315 * 17 16 14 31 31 H 1.08998 * 110.64620 * 155.43591 * 17 16 14 32 32 H 1.09003 * 109.87357 * 267.09126 * 19 18 17 33 33 H 1.08996 * 110.00636 * 146.00195 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 -0.0250 5 6 1.5590 2.1534 1.2667 6 6 2.1880 1.5081 2.4745 7 1 2.8630 0.6740 2.3512 8 6 1.9010 1.9818 3.7371 9 7 2.4495 1.4183 4.7913 10 14 0.7330 3.4239 3.9505 11 1 -0.6560 2.9188 4.0946 12 1 1.1095 4.1903 5.1655 13 1 0.8170 4.3090 2.7611 14 6 1.5015 2.1739 -1.2311 15 1 0.4134 2.2283 -1.1958 16 6 1.9669 1.4677 -2.5277 17 6 2.3087 2.6717 -3.4458 18 8 2.8824 3.6373 -2.5386 19 6 2.1092 3.5868 -1.3279 20 1 -0.3633 -1.0271 -0.0348 21 1 -0.3633 0.4834 0.9068 22 1 -0.3633 0.5436 -0.8722 23 1 1.8934 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 0.4741 2.0760 1.3369 26 1 1.8464 3.2040 1.2249 27 1 2.2473 1.7513 5.6796 28 1 2.8506 0.8571 -2.3423 29 1 1.1632 0.8670 -2.9535 30 1 1.4047 3.0688 -3.9076 31 1 3.0336 2.3816 -4.2063 32 1 1.3134 4.3307 -1.3651 33 1 2.7513 3.7737 -0.4672 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260400979.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:07 Heat of formation + Delta-G solvation = -71.756953 kcal Electronic energy + Delta-G solvation = -13292.802183 eV Core-core repulsion = 11124.622511 eV Total energy + Delta-G solvation = -2168.179673 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.40986 -36.09318 -32.51951 -30.87262 -29.76522 -28.21788 -25.10128 -22.84048 -22.06687 -20.82893 -18.25622 -16.80571 -16.25352 -15.61891 -14.61524 -14.41449 -14.00612 -13.65956 -12.94905 -12.53747 -12.46599 -12.01084 -11.51639 -11.41815 -11.29054 -11.04042 -10.83734 -10.64447 -10.37633 -10.05597 -9.69552 -9.61654 -9.35099 -9.26315 -8.97732 -8.50595 -6.01918 -3.98587 3.30657 3.38914 3.41910 4.21862 4.46575 4.89009 5.07203 5.18406 5.31988 5.40066 5.55439 5.74310 5.78915 5.87072 5.90851 5.95233 6.08775 6.13216 6.24447 6.40298 6.47571 6.56797 6.68973 6.79058 7.00643 7.11595 7.15511 7.34209 7.47180 7.82773 8.57194 9.03745 9.61128 11.11585 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040073 B = 0.010752 C = 0.009568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.561082 B = 2603.527797 C = 2925.699379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.064 4.064 4 H 0.065 0.935 5 C -0.013 4.013 6 C -0.512 4.512 7 H 0.073 0.927 8 C 0.065 3.935 9 N -0.905 5.905 10 Si 0.875 3.125 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.266 1.266 14 C -0.119 4.119 15 H 0.079 0.921 16 C -0.148 4.148 17 C 0.044 3.956 18 O -0.384 6.384 19 C 0.048 3.952 20 H 0.040 0.960 21 H 0.064 0.936 22 H 0.043 0.957 23 H 0.041 0.959 24 H 0.074 0.926 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.262 0.738 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.544 0.829 -13.306 13.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.083 4.083 4 H 0.083 0.917 5 C -0.050 4.050 6 C -0.550 4.550 7 H 0.091 0.909 8 C -0.135 4.135 9 N -0.544 5.544 10 Si 0.703 3.297 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.190 1.190 14 C -0.137 4.137 15 H 0.097 0.903 16 C -0.186 4.186 17 C -0.032 4.032 18 O -0.303 6.303 19 C -0.029 4.029 20 H 0.059 0.941 21 H 0.083 0.917 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.357 0.983 -13.145 13.602 hybrid contribution -0.878 0.609 0.388 1.137 sum -4.235 1.591 -12.756 13.535 Atomic orbital electron populations 1.21821 0.97006 1.00148 1.01688 1.21426 0.95389 0.96770 1.00988 1.21090 0.99484 0.94436 0.93260 0.91708 1.19733 0.96340 0.95671 0.93249 1.21126 1.27576 1.17013 0.89256 0.90917 1.25021 0.95862 0.96575 0.96069 1.69913 1.44403 1.41845 0.98273 0.86844 0.81569 0.83531 0.77752 1.20422 1.21489 1.19016 1.22707 1.00695 0.94477 0.95866 0.90294 1.23231 1.01911 0.97895 0.95518 1.23554 0.97891 0.88614 0.93165 1.88833 1.55156 1.60406 1.25907 1.23369 0.95356 0.96456 0.87692 0.94129 0.91705 0.93811 0.94027 0.90728 0.96637 0.96736 0.92851 0.90391 0.90808 0.92877 0.89644 0.93133 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.23 37.16 0.34 -2.13 16 2 C -0.11 -1.94 5.28 -26.73 -0.14 -2.08 16 3 C -0.06 -1.23 1.39 -90.62 -0.13 -1.35 16 4 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 5 C -0.01 -0.30 3.20 -27.88 -0.09 -0.38 16 6 C -0.51 -14.20 8.94 -34.44 -0.31 -14.51 16 7 H 0.07 2.18 7.30 -52.48 -0.38 1.79 16 8 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 9 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 10 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 14 C -0.12 -1.90 2.09 -89.09 -0.19 -2.09 16 15 H 0.08 1.22 6.58 -51.93 -0.34 0.88 16 16 C -0.15 -1.98 5.71 -24.60 -0.14 -2.12 16 17 C 0.04 0.57 7.72 38.33 0.30 0.87 16 18 O -0.38 -6.36 11.52 -35.23 -0.41 -6.76 16 19 C 0.05 0.79 6.86 37.73 0.26 1.05 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.06 1.21 6.45 -51.93 -0.34 0.87 16 22 H 0.04 0.64 6.37 -51.93 -0.33 0.31 16 23 H 0.04 0.65 7.07 -51.92 -0.37 0.28 16 24 H 0.07 1.53 6.91 -51.93 -0.36 1.18 16 25 H 0.02 0.35 5.69 -51.93 -0.30 0.06 16 26 H 0.01 0.34 5.74 -51.93 -0.30 0.04 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 28 H 0.08 1.07 7.52 -51.93 -0.39 0.68 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.69 6.65 -51.93 -0.35 1.34 16 LS Contribution 253.04 15.07 3.81 3.81 Total: -1.00 -29.92 253.04 -5.83 -35.75 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -5.15 Total: -1.79 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -0.19 Total: -20.96 kcal Atomic # 7 Polarization: -27.83 SS G_CDS: 0.77 Total: -27.06 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.41 Total: -6.76 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.92 -5.83 -35.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400979.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.006 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds