Wall clock time and date at job start Mon Mar 30 2020 02:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47100 * 2 1 4 4 H 1.09005 * 109.47252 * 181.39611 * 3 2 1 5 5 C 1.53009 * 109.46722 * 61.40538 * 3 2 1 6 6 C 1.50692 * 109.47295 * 64.99976 * 5 3 2 7 7 H 1.08010 * 120.00255 * 359.97438 * 6 5 3 8 8 C 1.37876 * 120.00121 * 180.02562 * 6 5 3 9 9 N 1.31516 * 120.00163 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99892 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47214 * 90.00193 * 10 8 6 12 12 H 1.48501 * 109.46991 * 210.00176 * 10 8 6 13 13 H 1.48502 * 109.46778 * 330.00016 * 10 8 6 14 14 C 1.52995 * 109.47781 * 301.40202 * 3 2 1 15 15 H 1.09004 * 110.43352 * 62.92062 * 14 3 2 16 16 C 1.54810 * 110.48819 * 300.37773 * 14 3 2 17 17 C 1.55221 * 101.98774 * 220.51553 * 16 14 3 18 18 O 1.44382 * 103.56820 * 36.87760 * 17 16 14 19 19 C 1.43744 * 106.97592 * 320.01588 * 18 17 16 20 20 H 1.08998 * 109.47122 * 178.06041 * 1 2 3 21 21 H 1.08994 * 109.47135 * 298.06053 * 1 2 3 22 22 H 1.09001 * 109.47054 * 58.06701 * 1 2 3 23 23 H 1.09012 * 109.47106 * 240.00737 * 2 1 3 24 24 H 1.08999 * 109.47157 * 120.00466 * 2 1 3 25 25 H 1.08996 * 109.46712 * 304.99236 * 5 3 2 26 26 H 1.09001 * 109.46593 * 184.99604 * 5 3 2 27 27 H 0.96996 * 120.00032 * 180.02562 * 9 8 6 28 28 H 1.08994 * 110.90561 * 338.64051 * 16 14 3 29 29 H 1.09002 * 110.90769 * 102.23843 * 16 14 3 30 30 H 1.09006 * 110.52151 * 278.38315 * 17 16 14 31 31 H 1.08998 * 110.64620 * 155.43591 * 17 16 14 32 32 H 1.09003 * 109.87357 * 267.09126 * 19 18 17 33 33 H 1.08996 * 110.00636 * 146.00195 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 -0.0250 5 6 1.5590 2.1534 1.2667 6 6 2.1880 1.5081 2.4745 7 1 2.8630 0.6740 2.3512 8 6 1.9010 1.9818 3.7371 9 7 2.4495 1.4183 4.7913 10 14 0.7330 3.4239 3.9505 11 1 -0.6560 2.9188 4.0946 12 1 1.1095 4.1903 5.1655 13 1 0.8170 4.3090 2.7611 14 6 1.5015 2.1739 -1.2311 15 1 0.4134 2.2283 -1.1958 16 6 1.9669 1.4677 -2.5277 17 6 2.3087 2.6717 -3.4458 18 8 2.8824 3.6373 -2.5386 19 6 2.1092 3.5868 -1.3279 20 1 -0.3633 -1.0271 -0.0348 21 1 -0.3633 0.4834 0.9068 22 1 -0.3633 0.5436 -0.8722 23 1 1.8934 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 0.4741 2.0760 1.3369 26 1 1.8464 3.2040 1.2249 27 1 2.2473 1.7513 5.6796 28 1 2.8506 0.8571 -2.3423 29 1 1.1632 0.8670 -2.9535 30 1 1.4047 3.0688 -3.9076 31 1 3.0336 2.3816 -4.2063 32 1 1.3134 4.3307 -1.3651 33 1 2.7513 3.7737 -0.4672 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260400979.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:07 Heat of formation + Delta-G solvation = -90.950530 kcal Electronic energy + Delta-G solvation = -13293.634479 eV Core-core repulsion = 11124.622511 eV Total energy + Delta-G solvation = -2169.011969 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.65770 -37.57735 -34.62000 -32.15199 -31.29725 -29.72168 -26.69753 -24.46682 -23.32345 -22.25468 -19.75065 -18.90568 -17.45116 -16.89560 -16.31708 -15.80862 -15.64234 -15.18925 -14.52287 -14.17441 -13.70211 -13.55960 -13.25933 -13.08554 -12.58495 -12.45322 -12.17970 -12.08819 -11.93911 -11.64503 -11.49239 -11.19263 -10.90127 -10.86952 -10.70183 -10.49916 -8.25535 -6.26841 1.34386 1.36895 1.48030 2.37336 3.08624 3.12201 3.69812 3.83311 4.03128 4.29835 4.35227 4.41172 4.47265 4.55032 4.69997 4.86256 4.88979 4.90725 4.95638 5.05801 5.08422 5.14496 5.24299 5.30963 5.45064 5.54406 5.65160 5.73970 5.76767 6.02061 6.35304 6.80589 7.36234 8.91450 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040073 B = 0.010752 C = 0.009568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.561082 B = 2603.527797 C = 2925.699379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.060 4.060 4 H 0.041 0.959 5 C -0.009 4.009 6 C -0.514 4.514 7 H 0.032 0.968 8 C 0.001 3.999 9 N -0.955 5.955 10 Si 0.943 3.057 11 H -0.266 1.266 12 H -0.288 1.288 13 H -0.246 1.246 14 C -0.114 4.114 15 H 0.094 0.906 16 C -0.142 4.142 17 C 0.041 3.959 18 O -0.406 6.406 19 C 0.046 3.954 20 H 0.057 0.943 21 H 0.038 0.962 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.025 0.975 26 H 0.014 0.986 27 H 0.263 0.737 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.417 1.633 -15.709 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.078 4.078 4 H 0.059 0.941 5 C -0.046 4.046 6 C -0.552 4.552 7 H 0.050 0.950 8 C -0.195 4.195 9 N -0.597 5.597 10 Si 0.767 3.233 11 H -0.191 1.191 12 H -0.214 1.214 13 H -0.169 1.169 14 C -0.132 4.132 15 H 0.112 0.888 16 C -0.180 4.180 17 C -0.035 4.035 18 O -0.326 6.326 19 C -0.030 4.030 20 H 0.076 0.924 21 H 0.057 0.943 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.032 0.968 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.231 1.781 -15.576 16.527 hybrid contribution -0.201 0.274 1.109 1.160 sum -5.432 2.055 -14.467 15.589 Atomic orbital electron populations 1.21780 0.95347 1.01479 1.01606 1.21373 0.96803 0.95725 1.00434 1.20959 0.98188 0.95380 0.93314 0.94061 1.19679 0.96367 0.95457 0.93083 1.21456 1.26554 1.15805 0.91369 0.95009 1.25978 0.97961 0.99844 0.95709 1.70076 1.46646 1.44054 0.98918 0.85758 0.79364 0.79918 0.78264 1.19134 1.21429 1.16939 1.22621 1.01244 0.94054 0.95299 0.88813 1.23227 1.02512 0.98164 0.94076 1.23810 0.99331 0.87545 0.92793 1.88811 1.55938 1.61588 1.26287 1.23310 0.95201 0.97242 0.87271 0.92440 0.94290 0.91003 0.91181 0.94708 0.95687 0.96821 0.92799 0.91151 0.87997 0.90757 0.87706 0.91665 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 9.23 71.98 0.66 -3.78 16 2 C -0.11 -3.71 5.28 30.59 0.16 -3.55 16 3 C -0.06 -2.26 1.39 -10.79 -0.01 -2.27 16 4 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 5 C -0.01 -0.40 3.20 29.85 0.10 -0.30 16 6 C -0.51 -29.49 8.94 25.60 0.23 -29.26 16 7 H 0.03 2.02 7.30 -2.91 -0.02 2.00 16 8 C 0.00 0.05 5.47 84.65 0.46 0.52 16 9 N -0.96 -60.81 13.96 21.45 0.30 -60.51 16 10 Si 0.94 44.68 27.47 68.60 1.88 46.57 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 13 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 14 C -0.11 -3.33 2.09 -9.81 -0.02 -3.35 16 15 H 0.09 2.50 6.58 -2.39 -0.02 2.49 16 16 C -0.14 -3.28 5.71 31.97 0.18 -3.10 16 17 C 0.04 0.91 7.72 72.74 0.56 1.47 16 18 O -0.41 -12.56 11.52 -148.98 -1.72 -14.28 16 19 C 0.05 1.45 6.86 72.35 0.50 1.95 16 20 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.04 1.38 6.45 -2.39 -0.02 1.37 16 22 H 0.07 1.79 6.37 -2.39 -0.02 1.78 16 23 H 0.07 2.04 7.07 -2.38 -0.02 2.03 16 24 H 0.03 1.47 6.91 -2.39 -0.02 1.46 16 25 H 0.02 1.11 5.69 -2.39 -0.01 1.09 16 26 H 0.01 0.63 5.74 -2.39 -0.01 0.61 16 27 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.07 1.74 7.52 -2.39 -0.02 1.72 16 29 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 2.43 6.65 -2.39 -0.02 2.41 16 Total: -1.00 -66.57 253.04 4.30 -62.27 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.02 Total: 7.64 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 2.82 Total: -41.68 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 0.30 Total: -60.51 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -1.72 Total: -14.28 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.57 kcal Total: -66.57 4.30 -62.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400979.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.682 kcal (2) G-P(sol) polarization free energy of solvation -66.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds