Wall clock time and date at job start Mon Mar 30 2020 02:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47123 * 2 1 4 4 H 1.09000 * 109.47386 * 179.05193 * 3 2 1 5 5 C 1.53003 * 109.47161 * 299.05194 * 3 2 1 6 6 C 1.50697 * 109.46849 * 294.58705 * 5 3 2 7 7 H 1.07999 * 120.00279 * 355.12640 * 6 5 3 8 8 C 1.37883 * 120.00031 * 175.12376 * 6 5 3 9 9 N 1.31515 * 119.99821 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00189 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46827 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46919 * 120.00117 * 10 8 6 13 13 H 1.48499 * 109.46958 * 239.99888 * 10 8 6 14 14 C 1.53004 * 109.46939 * 59.05216 * 3 2 1 15 15 H 1.09004 * 110.74798 * 299.29672 * 14 3 2 16 16 C 1.55301 * 110.85022 * 62.77294 * 14 3 2 17 17 C 1.55199 * 100.82744 * 152.17951 * 16 14 3 18 18 O 1.43646 * 105.26025 * 323.81556 * 17 16 14 19 19 C 1.43237 * 109.97326 * 24.28510 * 18 17 16 20 20 H 1.08993 * 109.47608 * 62.21530 * 1 2 3 21 21 H 1.08998 * 109.47053 * 182.21716 * 1 2 3 22 22 H 1.09002 * 109.47188 * 302.21284 * 1 2 3 23 23 H 1.09001 * 109.47134 * 240.00037 * 2 1 3 24 24 H 1.08999 * 109.47905 * 120.00002 * 2 1 3 25 25 H 1.09003 * 109.46694 * 54.58567 * 5 3 2 26 26 H 1.09003 * 109.47278 * 174.58872 * 5 3 2 27 27 H 0.96993 * 120.00192 * 179.97438 * 9 8 6 28 28 H 1.08998 * 111.12254 * 270.24486 * 16 14 3 29 29 H 1.08998 * 111.12587 * 34.40119 * 16 14 3 30 30 H 1.08997 * 110.37283 * 204.80165 * 17 16 14 31 31 H 1.08997 * 110.21520 * 82.74874 * 17 16 14 32 32 H 1.08995 * 109.83314 * 238.77557 * 19 18 17 33 33 H 1.09004 * 109.90562 * 117.83935 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4426 0.0170 5 6 1.5495 2.1569 -1.2610 6 6 2.1774 1.5213 -2.4746 7 1 2.9174 0.7438 -2.3552 8 6 1.8070 1.9323 -3.7376 9 7 0.9054 2.8787 -3.8830 10 14 2.5857 1.1450 -5.2420 11 1 3.5629 0.1133 -4.8107 12 1 1.5298 0.5103 -6.0709 13 1 3.2830 2.1853 -6.0400 14 6 1.5105 2.1706 1.2372 15 1 0.4207 2.1936 1.2349 16 6 2.0468 1.5124 2.5376 17 6 2.0352 2.7261 3.5048 18 8 2.4030 3.8561 2.6979 19 6 2.0901 3.5989 1.3240 20 1 -0.3634 0.4790 -0.9091 21 1 -0.3633 -1.0269 0.0398 22 1 -0.3634 0.5478 0.8695 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 0.4647 2.0733 -1.3272 26 1 1.8308 3.2090 -1.2153 27 1 0.6451 3.1682 -4.7714 28 1 1.3782 0.7240 2.8833 29 1 3.0589 1.1331 2.3974 30 1 2.7608 2.5805 4.3051 31 1 1.0375 2.8669 3.9206 32 1 2.9943 3.6685 0.7195 33 1 1.3525 4.3193 0.9703 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260400985.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:08 Heat of formation + Delta-G solvation = -76.683648 kcal Electronic energy + Delta-G solvation = -13219.833921 eV Core-core repulsion = 11051.440611 eV Total energy + Delta-G solvation = -2168.393310 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.27949 -36.00555 -32.57475 -30.83258 -29.52231 -27.85537 -24.88729 -23.00979 -21.80448 -21.10226 -18.29293 -16.45743 -16.14849 -15.40352 -14.52720 -14.51804 -13.90262 -13.34053 -12.85046 -12.73295 -12.50759 -11.70557 -11.37775 -11.26201 -11.12589 -10.97755 -10.75433 -10.57992 -10.44816 -10.12958 -9.86582 -9.56387 -9.16351 -8.99673 -8.89466 -8.32624 -5.98601 -3.99524 3.30967 3.39015 3.42456 4.24439 4.46830 4.90946 5.14691 5.27911 5.37450 5.51055 5.65230 5.82453 5.87434 5.93398 5.98573 6.10961 6.14400 6.21662 6.36258 6.50310 6.56364 6.68327 6.86180 6.96643 7.08254 7.23139 7.35242 7.70954 7.84095 8.02081 8.45055 9.06942 9.63814 11.12619 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047363 B = 0.009311 C = 0.008530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.039489 B = 3006.498741 C = 3281.623714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.072 4.072 4 H 0.057 0.943 5 C 0.023 3.977 6 C -0.512 4.512 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.285 1.285 14 C -0.115 4.115 15 H 0.081 0.919 16 C -0.151 4.151 17 C 0.050 3.950 18 O -0.394 6.394 19 C 0.056 3.944 20 H 0.069 0.931 21 H 0.037 0.963 22 H 0.043 0.957 23 H 0.069 0.931 24 H 0.037 0.963 25 H 0.026 0.974 26 H 0.012 0.988 27 H 0.259 0.741 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.390 -3.164 10.537 11.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.091 4.091 4 H 0.075 0.925 5 C -0.014 4.014 6 C -0.551 4.551 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.211 1.211 14 C -0.133 4.133 15 H 0.099 0.901 16 C -0.189 4.189 17 C -0.026 4.026 18 O -0.314 6.314 19 C -0.020 4.020 20 H 0.088 0.912 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.088 0.912 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.031 0.969 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.389 -2.877 10.474 10.869 hybrid contribution 0.225 -0.574 -1.065 1.230 sum 0.613 -3.451 9.410 10.041 Atomic orbital electron populations 1.21827 0.96832 0.99875 1.02170 1.21386 0.95587 0.96885 1.00402 1.21225 0.98933 0.94538 0.94356 0.92459 1.19248 0.97129 0.94942 0.90069 1.21260 1.22744 1.20174 0.90890 0.92700 1.25003 0.95228 0.95204 0.99017 1.69966 1.31660 1.29294 1.22581 0.86613 0.79239 0.79299 0.83318 1.19812 1.21124 1.21110 1.22856 1.00801 0.94159 0.95492 0.90079 1.23357 1.02169 0.97765 0.95561 1.23348 0.99458 0.85674 0.94132 1.88344 1.84924 1.39450 1.18656 1.23262 1.00407 0.96463 0.81898 0.91199 0.94421 0.93808 0.91246 0.94390 0.95573 0.96946 0.93158 0.90480 0.90630 0.90577 0.92874 0.90777 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.23 37.16 0.34 -2.26 16 2 C -0.11 -1.91 5.34 -26.73 -0.14 -2.05 16 3 C -0.07 -1.42 1.48 -90.62 -0.13 -1.55 16 4 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 5 C 0.02 0.56 4.16 -27.88 -0.12 0.45 16 6 C -0.51 -14.01 8.30 -34.44 -0.29 -14.29 16 7 H 0.05 1.47 7.28 -52.49 -0.38 1.09 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 10 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C -0.11 -1.94 2.08 -88.67 -0.18 -2.13 16 15 H 0.08 1.38 6.48 -51.93 -0.34 1.05 16 16 C -0.15 -2.11 5.64 -24.35 -0.14 -2.25 16 17 C 0.05 0.69 7.78 38.32 0.30 0.99 16 18 O -0.39 -6.79 11.36 -35.23 -0.40 -7.19 16 19 C 0.06 0.99 6.41 37.88 0.24 1.23 16 20 H 0.07 1.41 6.45 -51.93 -0.34 1.07 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.04 0.69 6.32 -51.93 -0.33 0.36 16 23 H 0.07 1.39 7.06 -51.93 -0.37 1.02 16 24 H 0.04 0.60 7.41 -51.93 -0.38 0.21 16 25 H 0.03 0.68 6.23 -51.93 -0.32 0.36 16 26 H 0.01 0.32 7.17 -51.93 -0.37 -0.05 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.38 7.67 -51.93 -0.40 0.99 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 258.63 15.07 3.90 3.90 Total: -1.00 -29.11 258.63 -6.32 -35.42 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.31 Total: -2.47 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -0.21 Total: -20.37 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.78 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.40 Total: -7.19 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.11 -6.32 -35.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400985.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.263 kcal (2) G-P(sol) polarization free energy of solvation -29.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds