Wall clock time and date at job start Mon Mar 30 2020 02:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47123 * 2 1 4 4 H 1.09000 * 109.47386 * 179.05193 * 3 2 1 5 5 C 1.53003 * 109.47161 * 299.05194 * 3 2 1 6 6 C 1.50697 * 109.46849 * 294.58705 * 5 3 2 7 7 H 1.07999 * 120.00279 * 355.12640 * 6 5 3 8 8 C 1.37883 * 120.00031 * 175.12376 * 6 5 3 9 9 N 1.31515 * 119.99821 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00189 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46827 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46919 * 120.00117 * 10 8 6 13 13 H 1.48499 * 109.46958 * 239.99888 * 10 8 6 14 14 C 1.53004 * 109.46939 * 59.05216 * 3 2 1 15 15 H 1.09004 * 110.74798 * 299.29672 * 14 3 2 16 16 C 1.55301 * 110.85022 * 62.77294 * 14 3 2 17 17 C 1.55199 * 100.82744 * 152.17951 * 16 14 3 18 18 O 1.43646 * 105.26025 * 323.81556 * 17 16 14 19 19 C 1.43237 * 109.97326 * 24.28510 * 18 17 16 20 20 H 1.08993 * 109.47608 * 62.21530 * 1 2 3 21 21 H 1.08998 * 109.47053 * 182.21716 * 1 2 3 22 22 H 1.09002 * 109.47188 * 302.21284 * 1 2 3 23 23 H 1.09001 * 109.47134 * 240.00037 * 2 1 3 24 24 H 1.08999 * 109.47905 * 120.00002 * 2 1 3 25 25 H 1.09003 * 109.46694 * 54.58567 * 5 3 2 26 26 H 1.09003 * 109.47278 * 174.58872 * 5 3 2 27 27 H 0.96993 * 120.00192 * 179.97438 * 9 8 6 28 28 H 1.08998 * 111.12254 * 270.24486 * 16 14 3 29 29 H 1.08998 * 111.12587 * 34.40119 * 16 14 3 30 30 H 1.08997 * 110.37283 * 204.80165 * 17 16 14 31 31 H 1.08997 * 110.21520 * 82.74874 * 17 16 14 32 32 H 1.08995 * 109.83314 * 238.77557 * 19 18 17 33 33 H 1.09004 * 109.90562 * 117.83935 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4426 0.0170 5 6 1.5495 2.1569 -1.2610 6 6 2.1774 1.5213 -2.4746 7 1 2.9174 0.7438 -2.3552 8 6 1.8070 1.9323 -3.7376 9 7 0.9054 2.8787 -3.8830 10 14 2.5857 1.1450 -5.2420 11 1 3.5629 0.1133 -4.8107 12 1 1.5298 0.5103 -6.0709 13 1 3.2830 2.1853 -6.0400 14 6 1.5105 2.1706 1.2372 15 1 0.4207 2.1936 1.2349 16 6 2.0468 1.5124 2.5376 17 6 2.0352 2.7261 3.5048 18 8 2.4030 3.8561 2.6979 19 6 2.0901 3.5989 1.3240 20 1 -0.3634 0.4790 -0.9091 21 1 -0.3633 -1.0269 0.0398 22 1 -0.3634 0.5478 0.8695 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 0.4647 2.0733 -1.3272 26 1 1.8308 3.2090 -1.2153 27 1 0.6451 3.1682 -4.7714 28 1 1.3782 0.7240 2.8833 29 1 3.0589 1.1331 2.3974 30 1 2.7608 2.5805 4.3051 31 1 1.0375 2.8669 3.9206 32 1 2.9943 3.6685 0.7195 33 1 1.3525 4.3193 0.9703 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260400985.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:08 Heat of formation + Delta-G solvation = -94.159235 kcal Electronic energy + Delta-G solvation = -13220.591719 eV Core-core repulsion = 11051.440611 eV Total energy + Delta-G solvation = -2169.151109 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.61859 -37.56254 -34.63124 -32.16761 -31.00968 -29.53035 -26.61764 -24.73398 -23.12582 -22.53367 -19.82987 -18.42084 -17.55980 -16.80793 -16.49190 -15.89170 -15.39561 -14.78671 -14.42771 -14.25173 -14.03164 -13.37675 -13.07527 -13.00285 -12.59009 -12.51011 -12.30867 -12.16455 -11.96521 -11.84335 -11.37401 -11.21206 -10.82688 -10.71471 -10.48722 -10.43380 -8.15404 -6.23110 1.38537 1.39822 1.51633 2.42393 3.01286 3.18491 3.64199 3.85582 4.03301 4.31562 4.36005 4.42745 4.47579 4.58124 4.69892 4.84237 4.89442 4.98619 5.01470 5.07163 5.13987 5.21185 5.30053 5.40313 5.54253 5.58963 5.69578 5.85714 5.96151 6.09169 6.33401 6.93647 7.44355 8.96273 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047363 B = 0.009311 C = 0.008530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.039489 B = 3006.498741 C = 3281.623714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.063 4.063 4 H 0.050 0.950 5 C 0.029 3.971 6 C -0.524 4.524 7 H 0.057 0.943 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.954 3.046 11 H -0.263 1.263 12 H -0.280 1.280 13 H -0.282 1.282 14 C -0.112 4.112 15 H 0.081 0.919 16 C -0.140 4.140 17 C 0.044 3.956 18 O -0.410 6.410 19 C 0.058 3.942 20 H 0.031 0.969 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.046 0.954 24 H 0.073 0.927 25 H 0.005 0.995 26 H -0.015 1.015 27 H 0.260 0.740 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.796 -4.764 11.916 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 C -0.082 4.082 4 H 0.068 0.932 5 C -0.008 4.008 6 C -0.562 4.562 7 H 0.075 0.925 8 C -0.198 4.198 9 N -0.574 5.574 10 Si 0.780 3.220 11 H -0.187 1.187 12 H -0.206 1.206 13 H -0.208 1.208 14 C -0.130 4.130 15 H 0.100 0.900 16 C -0.178 4.178 17 C -0.032 4.032 18 O -0.331 6.331 19 C -0.019 4.019 20 H 0.050 0.950 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.092 0.908 25 H 0.023 0.977 26 H 0.003 0.997 27 H 0.069 0.931 28 H 0.122 0.878 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.802 -4.488 11.869 12.714 hybrid contribution 0.094 -0.047 -1.450 1.454 sum 0.896 -4.535 10.419 11.398 Atomic orbital electron populations 1.21761 0.96183 1.01191 1.01057 1.21352 0.96112 0.95463 1.00981 1.21044 0.98385 0.95552 0.93216 0.93202 1.19123 0.95645 0.93814 0.92201 1.21660 1.22524 1.19962 0.92057 0.92504 1.25872 0.95811 0.95788 1.02312 1.70095 1.33196 1.30841 1.23307 0.85555 0.78502 0.78527 0.79434 1.18689 1.20614 1.20818 1.22745 1.00698 0.93663 0.95899 0.90044 1.23339 1.02742 0.98367 0.93320 1.23634 1.01227 0.84220 0.94071 1.88326 1.85174 1.41303 1.18261 1.23106 0.99280 0.96984 0.82483 0.95008 0.92109 0.91969 0.93540 0.90814 0.97715 0.99719 0.93104 0.87829 0.90328 0.88061 0.91289 0.92584 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.23 71.98 0.66 -4.13 16 2 C -0.10 -3.52 5.34 30.59 0.16 -3.36 16 3 C -0.06 -2.47 1.48 -10.79 -0.02 -2.49 16 4 H 0.05 2.01 8.12 -2.39 -0.02 1.99 16 5 C 0.03 1.48 4.16 29.85 0.12 1.60 16 6 C -0.52 -29.20 8.30 25.60 0.21 -28.98 16 7 H 0.06 3.07 7.28 -2.91 -0.02 3.05 16 8 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 9 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 10 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 11 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 14 C -0.11 -3.65 2.08 -9.53 -0.02 -3.67 16 15 H 0.08 2.67 6.48 -2.39 -0.02 2.65 16 16 C -0.14 -3.44 5.64 32.14 0.18 -3.26 16 17 C 0.04 1.07 7.78 72.74 0.57 1.63 16 18 O -0.41 -13.60 11.36 -148.98 -1.69 -15.29 16 19 C 0.06 2.07 6.41 72.45 0.46 2.53 16 20 H 0.03 1.28 6.45 -2.39 -0.02 1.26 16 21 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.06 1.81 6.32 -2.39 -0.02 1.79 16 23 H 0.05 1.81 7.06 -2.39 -0.02 1.80 16 24 H 0.07 2.05 7.41 -2.39 -0.02 2.03 16 25 H 0.00 0.25 6.23 -2.39 -0.01 0.24 16 26 H -0.02 -0.86 7.17 -2.39 -0.02 -0.88 16 27 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 28 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.08 1.91 8.04 -2.39 -0.02 1.89 16 30 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 2.17 7.67 -2.39 -0.02 2.15 16 33 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -63.45 258.63 4.48 -58.97 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.06 Total: 5.93 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 2.80 Total: -39.70 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.28 Total: -56.46 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -1.69 Total: -15.29 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -63.45 4.48 -58.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400985.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.191 kcal (2) G-P(sol) polarization free energy of solvation -63.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds