Wall clock time and date at job start Mon Mar 30 2020 02:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46896 * 2 1 4 4 H 1.08996 * 109.47480 * 305.54465 * 3 2 1 5 5 C 1.53003 * 109.47099 * 65.54368 * 3 2 1 6 6 C 1.50701 * 109.47104 * 57.70411 * 5 3 2 7 7 H 1.08001 * 120.00357 * 5.49851 * 6 5 3 8 8 C 1.37881 * 120.00062 * 185.50505 * 6 5 3 9 9 N 1.31516 * 120.00092 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99916 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47176 * 90.00011 * 10 8 6 12 12 H 1.48502 * 109.46951 * 210.00266 * 10 8 6 13 13 H 1.48503 * 109.46910 * 330.00162 * 10 8 6 14 14 C 1.52998 * 109.46984 * 185.54164 * 3 2 1 15 15 H 1.09002 * 110.80834 * 303.62758 * 14 3 2 16 16 C 1.54818 * 110.90800 * 180.02562 * 14 3 2 17 17 C 1.54097 * 104.18833 * 220.92306 * 16 14 3 18 18 O 1.43742 * 107.29435 * 357.96941 * 17 16 14 19 19 C 1.44385 * 106.97665 * 26.51182 * 18 17 16 20 20 H 1.09004 * 109.47318 * 174.53166 * 1 2 3 21 21 H 1.09007 * 109.47177 * 294.52690 * 1 2 3 22 22 H 1.09002 * 109.47649 * 54.52653 * 1 2 3 23 23 H 1.09000 * 109.47253 * 240.00314 * 2 1 3 24 24 H 1.08999 * 109.47244 * 119.99487 * 2 1 3 25 25 H 1.09004 * 109.47352 * 177.70047 * 5 3 2 26 26 H 1.08999 * 109.47353 * 297.70270 * 5 3 2 27 27 H 0.96999 * 120.00000 * 180.02562 * 9 8 6 28 28 H 1.08999 * 110.48240 * 339.59980 * 16 14 3 29 29 H 1.08996 * 110.48582 * 102.24402 * 16 14 3 30 30 H 1.08995 * 109.87946 * 117.39210 * 17 16 14 31 31 H 1.08998 * 109.87895 * 238.54450 * 17 16 14 32 32 H 1.08999 * 110.61605 * 201.43498 * 19 18 17 33 33 H 1.08999 * 110.61537 * 78.44226 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5978 1.9843 -0.8361 5 6 1.6468 2.1224 1.3131 6 6 2.2112 1.3414 2.4718 7 1 2.8652 0.5014 2.2895 8 6 1.8926 1.6990 3.7647 9 7 2.3847 1.0171 4.7759 10 14 0.7619 3.1521 4.0802 11 1 -0.6462 2.6827 4.1270 12 1 1.1168 3.7831 5.3768 13 1 0.9164 4.1458 2.9874 14 6 3.5635 1.4448 -0.1393 15 1 4.0256 0.8541 0.6517 16 6 4.1159 2.8911 -0.1424 17 6 5.2111 2.8748 -1.2263 18 8 5.2894 1.5325 -1.7345 19 6 3.9919 0.9307 -1.5373 20 1 -0.3634 -1.0230 -0.0979 21 1 -0.3634 0.4266 0.9350 22 1 -0.3634 0.5964 -0.8369 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5137 0.8900 25 1 2.0451 3.1370 1.3305 26 1 0.5603 2.1573 1.3932 27 1 2.1603 1.2685 5.6854 28 1 3.3298 3.5991 -0.4049 29 1 4.5442 3.1380 0.8290 30 1 4.9464 3.5608 -2.0309 31 1 6.1679 3.1627 -0.7908 32 1 4.0688 -0.1566 -1.5395 33 1 3.2920 1.2685 -2.3016 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260400990.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:10 Heat of formation + Delta-G solvation = -73.671444 kcal Electronic energy + Delta-G solvation = -13330.779804 eV Core-core repulsion = 11162.517112 eV Total energy + Delta-G solvation = -2168.262691 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.20421 -36.02694 -32.33465 -31.31518 -28.97912 -28.66386 -24.86075 -22.78160 -21.85235 -20.51445 -18.78899 -16.67867 -15.95592 -15.48087 -14.77825 -14.10217 -13.93678 -13.21202 -13.07989 -12.60580 -12.32885 -11.91500 -11.69059 -11.56356 -10.99604 -10.90438 -10.66075 -10.42006 -10.29312 -10.14529 -9.74068 -9.56875 -9.40720 -9.18792 -8.84013 -8.50668 -6.01989 -3.98121 3.29733 3.38250 3.41274 4.33451 4.46171 5.10793 5.29845 5.32500 5.38111 5.49819 5.70411 5.78448 5.82786 5.93123 6.06491 6.12774 6.22003 6.26869 6.43770 6.49054 6.53685 6.66253 6.80286 6.90219 6.99588 7.19631 7.24760 7.30383 7.41895 7.84150 8.56921 9.03493 9.61477 11.11134 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033746 B = 0.011879 C = 0.010213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.520619 B = 2356.575002 C = 2740.916019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.061 4.061 4 H 0.044 0.956 5 C -0.012 4.012 6 C -0.507 4.507 7 H 0.076 0.924 8 C 0.066 3.934 9 N -0.905 5.905 10 Si 0.874 3.126 11 H -0.279 1.279 12 H -0.290 1.290 13 H -0.267 1.267 14 C -0.101 4.101 15 H 0.095 0.905 16 C -0.146 4.146 17 C 0.047 3.953 18 O -0.388 6.388 19 C 0.047 3.953 20 H 0.041 0.959 21 H 0.062 0.938 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.080 0.920 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.261 0.739 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.090 2.173 -10.424 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.080 4.080 4 H 0.062 0.938 5 C -0.049 4.049 6 C -0.545 4.545 7 H 0.094 0.906 8 C -0.135 4.135 9 N -0.544 5.544 10 Si 0.702 3.298 11 H -0.205 1.205 12 H -0.216 1.216 13 H -0.192 1.192 14 C -0.120 4.120 15 H 0.113 0.887 16 C -0.183 4.183 17 C -0.030 4.030 18 O -0.307 6.307 19 C -0.029 4.029 20 H 0.060 0.940 21 H 0.081 0.919 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.099 0.901 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.277 2.072 -10.325 10.535 hybrid contribution -0.843 0.936 0.502 1.356 sum -0.565 3.009 -9.823 10.289 Atomic orbital electron populations 1.21726 0.96879 1.00057 1.01627 1.21524 0.95283 0.96911 1.01294 1.20985 0.92389 0.96132 0.98475 0.93775 1.19666 0.96051 0.95999 0.93171 1.21117 1.29264 1.15039 0.89049 0.90596 1.25017 0.95890 0.96205 0.96385 1.69910 1.45315 1.40425 0.98769 0.86873 0.81504 0.83878 0.77553 1.20477 1.21613 1.19210 1.22670 0.97260 0.95580 0.96457 0.88665 1.22908 0.97693 0.98264 0.99465 1.23162 0.99725 0.84530 0.95601 1.88791 1.32452 1.26436 1.83026 1.23724 0.84220 0.98310 0.96677 0.93985 0.91859 0.94145 0.94219 0.90123 0.96814 0.96787 0.92901 0.91168 0.90118 0.93296 0.90508 0.89528 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.54 37.15 0.35 -2.10 16 2 C -0.11 -2.03 5.15 -26.73 -0.14 -2.17 16 3 C -0.06 -1.15 1.56 -90.62 -0.14 -1.29 16 4 H 0.04 0.76 8.09 -51.93 -0.42 0.34 16 5 C -0.01 -0.26 3.35 -27.88 -0.09 -0.36 16 6 C -0.51 -13.54 8.16 -34.44 -0.28 -13.82 16 7 H 0.08 2.18 6.02 -52.49 -0.32 1.86 16 8 C 0.07 1.85 5.47 -17.82 -0.10 1.76 16 9 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 10 Si 0.87 21.44 27.36 -169.99 -4.65 16.79 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.27 -6.32 6.70 56.52 0.38 -5.94 16 14 C -0.10 -1.83 2.32 -88.61 -0.21 -2.03 16 15 H 0.10 1.97 6.88 -51.93 -0.36 1.62 16 16 C -0.15 -2.45 5.57 -25.20 -0.14 -2.59 16 17 C 0.05 0.70 7.70 37.73 0.29 0.99 16 18 O -0.39 -6.63 11.52 -35.23 -0.41 -7.04 16 19 C 0.05 0.75 6.36 38.21 0.24 0.99 16 20 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.06 1.19 6.91 -51.92 -0.36 0.84 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.62 7.25 -51.93 -0.38 0.25 16 24 H 0.08 1.67 6.41 -51.93 -0.33 1.34 16 25 H 0.01 0.31 6.42 -51.93 -0.33 -0.02 16 26 H 0.01 0.32 5.94 -51.93 -0.31 0.01 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.07 1.13 7.51 -51.93 -0.39 0.74 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.29 7.96 -51.93 -0.41 0.88 16 33 H 0.05 0.78 8.01 -51.93 -0.42 0.36 16 LS Contribution 255.34 15.07 3.85 3.85 Total: -1.00 -29.06 255.34 -5.94 -35.00 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.29 Total: -1.40 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -0.21 Total: -20.63 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.77 Total: -26.57 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.41 Total: -7.04 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.65 Total: 16.79 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.06 -5.94 -35.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400990.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.675 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds