Wall clock time and date at job start Mon Mar 30 2020 02:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46896 * 2 1 4 4 H 1.08996 * 109.47480 * 305.54465 * 3 2 1 5 5 C 1.53003 * 109.47099 * 65.54368 * 3 2 1 6 6 C 1.50701 * 109.47104 * 57.70411 * 5 3 2 7 7 H 1.08001 * 120.00357 * 5.49851 * 6 5 3 8 8 C 1.37881 * 120.00062 * 185.50505 * 6 5 3 9 9 N 1.31516 * 120.00092 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99916 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47176 * 90.00011 * 10 8 6 12 12 H 1.48502 * 109.46951 * 210.00266 * 10 8 6 13 13 H 1.48503 * 109.46910 * 330.00162 * 10 8 6 14 14 C 1.52998 * 109.46984 * 185.54164 * 3 2 1 15 15 H 1.09002 * 110.80834 * 303.62758 * 14 3 2 16 16 C 1.54818 * 110.90800 * 180.02562 * 14 3 2 17 17 C 1.54097 * 104.18833 * 220.92306 * 16 14 3 18 18 O 1.43742 * 107.29435 * 357.96941 * 17 16 14 19 19 C 1.44385 * 106.97665 * 26.51182 * 18 17 16 20 20 H 1.09004 * 109.47318 * 174.53166 * 1 2 3 21 21 H 1.09007 * 109.47177 * 294.52690 * 1 2 3 22 22 H 1.09002 * 109.47649 * 54.52653 * 1 2 3 23 23 H 1.09000 * 109.47253 * 240.00314 * 2 1 3 24 24 H 1.08999 * 109.47244 * 119.99487 * 2 1 3 25 25 H 1.09004 * 109.47352 * 177.70047 * 5 3 2 26 26 H 1.08999 * 109.47353 * 297.70270 * 5 3 2 27 27 H 0.96999 * 120.00000 * 180.02562 * 9 8 6 28 28 H 1.08999 * 110.48240 * 339.59980 * 16 14 3 29 29 H 1.08996 * 110.48582 * 102.24402 * 16 14 3 30 30 H 1.08995 * 109.87946 * 117.39210 * 17 16 14 31 31 H 1.08998 * 109.87895 * 238.54450 * 17 16 14 32 32 H 1.08999 * 110.61605 * 201.43498 * 19 18 17 33 33 H 1.08999 * 110.61537 * 78.44226 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5978 1.9843 -0.8361 5 6 1.6468 2.1224 1.3131 6 6 2.2112 1.3414 2.4718 7 1 2.8652 0.5014 2.2895 8 6 1.8926 1.6990 3.7647 9 7 2.3847 1.0171 4.7759 10 14 0.7619 3.1521 4.0802 11 1 -0.6462 2.6827 4.1270 12 1 1.1168 3.7831 5.3768 13 1 0.9164 4.1458 2.9874 14 6 3.5635 1.4448 -0.1393 15 1 4.0256 0.8541 0.6517 16 6 4.1159 2.8911 -0.1424 17 6 5.2111 2.8748 -1.2263 18 8 5.2894 1.5325 -1.7345 19 6 3.9919 0.9307 -1.5373 20 1 -0.3634 -1.0230 -0.0979 21 1 -0.3634 0.4266 0.9350 22 1 -0.3634 0.5964 -0.8369 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5137 0.8900 25 1 2.0451 3.1370 1.3305 26 1 0.5603 2.1573 1.3932 27 1 2.1603 1.2685 5.6854 28 1 3.3298 3.5991 -0.4049 29 1 4.5442 3.1380 0.8290 30 1 4.9464 3.5608 -2.0309 31 1 6.1679 3.1627 -0.7908 32 1 4.0688 -0.1566 -1.5395 33 1 3.2920 1.2685 -2.3016 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260400990.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:10 Heat of formation + Delta-G solvation = -91.753279 kcal Electronic energy + Delta-G solvation = -13331.563891 eV Core-core repulsion = 11162.517112 eV Total energy + Delta-G solvation = -2169.046778 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.55186 -37.55452 -34.42063 -32.67810 -30.63049 -30.10501 -26.53151 -24.36627 -23.29115 -21.89536 -20.49692 -18.61945 -17.27672 -16.84906 -16.17997 -16.12782 -15.40145 -14.81252 -14.48411 -14.32063 -13.84053 -13.43532 -13.28893 -13.16401 -12.61767 -12.31918 -12.28691 -12.02374 -11.89963 -11.69849 -11.54285 -11.08369 -10.89087 -10.70587 -10.65728 -10.52893 -8.20233 -6.19452 1.35356 1.37446 1.47938 2.39921 3.09172 3.15581 3.77149 3.92423 4.09141 4.25393 4.33432 4.41101 4.51125 4.57643 4.81954 4.85506 4.87076 4.92566 4.98877 5.05049 5.09980 5.20520 5.32867 5.39745 5.46090 5.59456 5.64654 5.66574 5.87188 5.99497 6.42210 6.87820 7.42809 8.96263 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033746 B = 0.011879 C = 0.010213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.520619 B = 2356.575002 C = 2740.916019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C -0.057 4.057 4 H 0.075 0.925 5 C -0.010 4.010 6 C -0.495 4.495 7 H 0.040 0.960 8 C 0.001 3.999 9 N -0.956 5.956 10 Si 0.937 3.063 11 H -0.272 1.272 12 H -0.292 1.292 13 H -0.248 1.248 14 C -0.105 4.105 15 H 0.054 0.946 16 C -0.146 4.146 17 C 0.049 3.951 18 O -0.405 6.405 19 C 0.055 3.945 20 H 0.056 0.944 21 H 0.036 0.964 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.016 0.984 26 H 0.018 0.982 27 H 0.261 0.739 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.956 3.526 -12.827 13.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.076 4.076 4 H 0.093 0.907 5 C -0.047 4.047 6 C -0.533 4.533 7 H 0.059 0.941 8 C -0.195 4.195 9 N -0.599 5.599 10 Si 0.762 3.238 11 H -0.197 1.197 12 H -0.218 1.218 13 H -0.171 1.171 14 C -0.124 4.124 15 H 0.072 0.928 16 C -0.184 4.184 17 C -0.028 4.028 18 O -0.325 6.325 19 C -0.021 4.021 20 H 0.075 0.925 21 H 0.055 0.945 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.770 3.431 -12.753 13.229 hybrid contribution -0.457 0.444 1.230 1.385 sum -1.228 3.875 -11.524 12.220 Atomic orbital electron populations 1.21703 0.95701 1.01423 1.01220 1.21479 0.96311 0.96370 1.00725 1.20957 0.92945 0.96465 0.97202 0.90705 1.19641 0.95838 0.95668 0.93602 1.21388 1.27569 1.13846 0.90526 0.94146 1.25900 0.97920 0.99310 0.96330 1.70072 1.47751 1.42833 0.99224 0.85847 0.79476 0.80709 0.77724 1.19698 1.21848 1.17119 1.22566 0.96700 0.96138 0.96958 0.92754 1.22901 0.98669 0.97568 0.99282 1.23259 0.99549 0.84208 0.95755 1.88775 1.33105 1.27472 1.83116 1.23719 0.84268 0.98759 0.95382 0.92456 0.94526 0.91577 0.91361 0.94141 0.96613 0.96418 0.93068 0.89891 0.92262 0.90592 0.89659 0.88917 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.54 71.98 0.69 -3.82 16 2 C -0.11 -3.87 5.15 30.59 0.16 -3.71 16 3 C -0.06 -2.04 1.56 -10.79 -0.02 -2.06 16 4 H 0.07 2.27 8.09 -2.39 -0.02 2.25 16 5 C -0.01 -0.45 3.35 29.85 0.10 -0.35 16 6 C -0.50 -27.14 8.16 25.60 0.21 -26.93 16 7 H 0.04 2.46 6.02 -2.91 -0.02 2.44 16 8 C 0.00 0.04 5.47 84.66 0.46 0.51 16 9 N -0.96 -59.97 13.96 21.45 0.30 -59.67 16 10 Si 0.94 44.22 27.36 68.60 1.88 46.10 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 13 H -0.25 -10.78 6.70 99.48 0.67 -10.12 16 14 C -0.10 -3.70 2.32 -9.49 -0.02 -3.72 16 15 H 0.05 2.35 6.88 -2.39 -0.02 2.33 16 16 C -0.15 -4.70 5.57 31.59 0.18 -4.53 16 17 C 0.05 1.34 7.70 72.35 0.56 1.90 16 18 O -0.40 -12.90 11.52 -148.98 -1.72 -14.62 16 19 C 0.05 1.60 6.36 72.66 0.46 2.06 16 20 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 21 H 0.04 1.33 6.91 -2.38 -0.02 1.31 16 22 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.07 1.97 7.25 -2.39 -0.02 1.95 16 24 H 0.04 1.72 6.41 -2.39 -0.02 1.70 16 25 H 0.02 0.69 6.42 -2.38 -0.02 0.67 16 26 H 0.02 0.77 5.94 -2.39 -0.01 0.76 16 27 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.08 2.44 7.51 -2.39 -0.02 2.42 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.09 2.57 7.96 -2.39 -0.02 2.55 16 33 H 0.08 1.93 8.01 -2.39 -0.02 1.91 16 Total: -1.00 -63.80 255.34 4.26 -59.55 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.03 Total: 9.31 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 2.77 Total: -40.66 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.30 Total: -59.67 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -1.72 Total: -14.62 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.10 kcal Total: -63.80 4.26 -59.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400990.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.207 kcal (2) G-P(sol) polarization free energy of solvation -63.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds