Wall clock time and date at job start Mon Mar 30 2020 02:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47553 * 2 1 4 4 H 1.09001 * 109.47618 * 185.16622 * 3 2 1 5 5 C 1.52999 * 109.46977 * 65.16086 * 3 2 1 6 6 C 1.50703 * 109.46870 * 65.00303 * 5 3 2 7 7 H 1.07997 * 120.00156 * 359.97438 * 6 5 3 8 8 C 1.37878 * 120.00031 * 179.97438 * 6 5 3 9 9 N 1.31515 * 119.99995 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00236 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46873 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46991 * 120.00100 * 10 8 6 13 13 H 1.48491 * 109.47243 * 240.00289 * 10 8 6 14 14 C 1.53003 * 109.47192 * 305.16547 * 3 2 1 15 15 H 1.09003 * 110.91056 * 62.58842 * 14 3 2 16 16 C 1.55303 * 110.84754 * 186.17602 * 14 3 2 17 17 C 1.54951 * 100.93993 * 152.32163 * 16 14 3 18 18 O 1.43644 * 105.13898 * 323.55756 * 17 16 14 19 19 C 1.43244 * 109.97021 * 24.42517 * 18 17 16 20 20 H 1.08998 * 109.46616 * 65.00266 * 1 2 3 21 21 H 1.08992 * 109.47060 * 185.00199 * 1 2 3 22 22 H 1.08994 * 109.46824 * 305.00550 * 1 2 3 23 23 H 1.09007 * 109.46773 * 239.99743 * 2 1 3 24 24 H 1.08999 * 109.46803 * 120.00397 * 2 1 3 25 25 H 1.09003 * 109.47258 * 185.00149 * 5 3 2 26 26 H 1.08998 * 109.47519 * 305.00063 * 5 3 2 27 27 H 0.97001 * 120.00329 * 180.02562 * 9 8 6 28 28 H 1.08999 * 111.12545 * 270.23937 * 16 14 3 29 29 H 1.08996 * 111.12707 * 34.40804 * 16 14 3 30 30 H 1.08995 * 110.31239 * 204.64032 * 17 16 14 31 31 H 1.09001 * 110.30912 * 82.47163 * 17 16 14 32 32 H 1.08997 * 109.82898 * 238.77945 * 19 18 17 33 33 H 1.08997 * 109.90629 * 117.84979 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1262 1.4438 -0.0925 5 6 1.6389 2.1252 1.3091 6 6 2.3409 1.4541 2.4614 7 1 3.0063 0.6234 2.2784 8 6 2.1337 1.9006 3.7493 9 7 1.3230 2.9119 3.9722 10 14 3.0033 1.0683 5.1777 11 1 3.8536 -0.0356 4.6641 12 1 3.8535 2.0594 5.8849 13 1 1.9947 0.5198 6.1195 14 6 1.4269 2.2003 -1.1793 15 1 0.3421 2.2526 -1.0862 16 6 2.0404 3.6217 -1.3020 17 6 1.8800 3.8811 -2.8211 18 8 2.1116 2.6084 -3.4456 19 6 1.8326 1.5513 -2.5200 20 1 -0.3632 0.4343 -0.9314 21 1 -0.3633 -1.0237 0.0896 22 1 -0.3633 0.5895 0.8417 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.9239 3.1767 1.2726 26 1 0.5603 2.0457 1.4447 27 1 1.1774 3.2263 4.8782 28 1 1.4732 4.3462 -0.7176 29 1 3.0912 3.6223 -1.0122 30 1 2.6170 4.6088 -3.1606 31 1 0.8716 4.2322 -3.0405 32 1 2.7227 0.9382 -2.3797 33 1 1.0151 0.9357 -2.8952 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260400995.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:11 Heat of formation + Delta-G solvation = -77.146570 kcal Electronic energy + Delta-G solvation = -13215.359982 eV Core-core repulsion = 11046.946598 eV Total energy + Delta-G solvation = -2168.413384 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.31557 -36.00685 -32.54581 -31.12558 -28.69373 -28.52150 -24.83322 -23.09648 -21.63116 -21.21018 -18.28603 -16.47177 -16.05330 -15.50253 -14.57875 -14.44370 -14.04217 -13.42368 -12.87428 -12.68061 -12.38540 -11.69122 -11.40049 -11.27065 -11.10066 -11.04512 -10.79931 -10.51462 -10.39319 -10.11792 -9.86795 -9.57934 -9.24778 -9.00578 -8.90137 -8.33147 -5.99522 -4.00269 3.30279 3.38347 3.41925 4.21082 4.45926 4.96145 5.21217 5.31289 5.36711 5.50320 5.65602 5.79151 5.85189 5.95427 5.98348 6.09165 6.15142 6.25004 6.37165 6.49889 6.56523 6.65815 6.83255 6.96174 7.08904 7.22352 7.28072 7.71125 7.84464 8.01749 8.44580 9.06224 9.63122 11.11748 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047428 B = 0.009247 C = 0.008481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.223369 B = 3027.240723 C = 3300.744201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.072 4.072 4 H 0.058 0.942 5 C 0.027 3.973 6 C -0.512 4.512 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.887 3.113 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.285 1.285 14 C -0.114 4.114 15 H 0.081 0.919 16 C -0.147 4.147 17 C 0.049 3.951 18 O -0.395 6.395 19 C 0.055 3.945 20 H 0.042 0.958 21 H 0.039 0.961 22 H 0.068 0.932 23 H 0.038 0.962 24 H 0.072 0.928 25 H 0.016 0.984 26 H 0.021 0.979 27 H 0.259 0.741 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.387 -1.143 -9.505 9.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.090 4.090 4 H 0.076 0.924 5 C -0.010 4.010 6 C -0.551 4.551 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.715 3.285 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.211 1.211 14 C -0.133 4.133 15 H 0.099 0.901 16 C -0.185 4.185 17 C -0.027 4.027 18 O -0.314 6.314 19 C -0.022 4.022 20 H 0.061 0.939 21 H 0.058 0.942 22 H 0.087 0.913 23 H 0.057 0.943 24 H 0.090 0.910 25 H 0.034 0.966 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.390 -1.075 -9.576 9.644 hybrid contribution 0.322 -0.345 1.183 1.274 sum -0.068 -1.420 -8.393 8.513 Atomic orbital electron populations 1.21831 0.96857 1.00456 1.01572 1.21465 0.95550 0.97102 1.00684 1.21220 0.98497 0.94152 0.95140 0.92395 1.19193 0.96931 0.95400 0.89485 1.21285 1.26396 1.15956 0.91445 0.92646 1.25002 0.95421 0.95141 0.98911 1.69968 1.36855 1.26106 1.20656 0.86611 0.79559 0.79524 0.82769 1.19789 1.21133 1.21116 1.22848 1.00951 0.94535 0.94951 0.90092 1.23281 1.02518 0.97653 0.95046 1.23377 1.00161 0.86281 0.92870 1.88321 1.89656 1.14877 1.38593 1.23261 1.00011 0.89977 0.88918 0.93933 0.94196 0.91348 0.94317 0.90956 0.96563 0.96119 0.93177 0.89873 0.90351 0.90393 0.92752 0.91435 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.15 37.16 0.34 -2.23 16 2 C -0.11 -2.02 5.28 -26.73 -0.14 -2.16 16 3 C -0.07 -1.41 1.49 -90.62 -0.13 -1.54 16 4 H 0.06 1.18 8.11 -51.93 -0.42 0.76 16 5 C 0.03 0.66 4.24 -27.88 -0.12 0.54 16 6 C -0.51 -13.98 8.33 -34.44 -0.29 -14.27 16 7 H 0.06 1.49 7.08 -52.49 -0.37 1.11 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 10 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C -0.11 -1.94 1.90 -88.67 -0.17 -2.11 16 15 H 0.08 1.38 6.71 -51.93 -0.35 1.03 16 16 C -0.15 -2.37 5.70 -24.48 -0.14 -2.51 16 17 C 0.05 0.71 7.78 38.19 0.30 1.00 16 18 O -0.39 -6.50 11.36 -35.23 -0.40 -6.90 16 19 C 0.05 0.86 6.53 37.88 0.25 1.10 16 20 H 0.04 0.65 6.72 -51.93 -0.35 0.30 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.07 1.34 6.26 -51.93 -0.32 1.01 16 23 H 0.04 0.62 7.27 -51.93 -0.38 0.24 16 24 H 0.07 1.46 6.82 -51.93 -0.35 1.10 16 25 H 0.02 0.42 7.31 -51.93 -0.38 0.04 16 26 H 0.02 0.54 6.26 -51.93 -0.32 0.21 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 29 H 0.08 1.30 8.02 -51.93 -0.42 0.89 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.05 7.46 -51.93 -0.39 0.66 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 258.34 15.07 3.89 3.89 Total: -1.00 -29.01 258.34 -6.29 -35.31 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -5.30 Total: -2.33 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -0.20 Total: -20.69 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.74 Total: -25.73 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.40 Total: -6.90 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.01 -6.29 -35.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400995.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.838 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds