Wall clock time and date at job start Mon Mar 30 2020 02:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47553 * 2 1 4 4 H 1.09001 * 109.47618 * 185.16622 * 3 2 1 5 5 C 1.52999 * 109.46977 * 65.16086 * 3 2 1 6 6 C 1.50703 * 109.46870 * 65.00303 * 5 3 2 7 7 H 1.07997 * 120.00156 * 359.97438 * 6 5 3 8 8 C 1.37878 * 120.00031 * 179.97438 * 6 5 3 9 9 N 1.31515 * 119.99995 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00236 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46873 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46991 * 120.00100 * 10 8 6 13 13 H 1.48491 * 109.47243 * 240.00289 * 10 8 6 14 14 C 1.53003 * 109.47192 * 305.16547 * 3 2 1 15 15 H 1.09003 * 110.91056 * 62.58842 * 14 3 2 16 16 C 1.55303 * 110.84754 * 186.17602 * 14 3 2 17 17 C 1.54951 * 100.93993 * 152.32163 * 16 14 3 18 18 O 1.43644 * 105.13898 * 323.55756 * 17 16 14 19 19 C 1.43244 * 109.97021 * 24.42517 * 18 17 16 20 20 H 1.08998 * 109.46616 * 65.00266 * 1 2 3 21 21 H 1.08992 * 109.47060 * 185.00199 * 1 2 3 22 22 H 1.08994 * 109.46824 * 305.00550 * 1 2 3 23 23 H 1.09007 * 109.46773 * 239.99743 * 2 1 3 24 24 H 1.08999 * 109.46803 * 120.00397 * 2 1 3 25 25 H 1.09003 * 109.47258 * 185.00149 * 5 3 2 26 26 H 1.08998 * 109.47519 * 305.00063 * 5 3 2 27 27 H 0.97001 * 120.00329 * 180.02562 * 9 8 6 28 28 H 1.08999 * 111.12545 * 270.23937 * 16 14 3 29 29 H 1.08996 * 111.12707 * 34.40804 * 16 14 3 30 30 H 1.08995 * 110.31239 * 204.64032 * 17 16 14 31 31 H 1.09001 * 110.30912 * 82.47163 * 17 16 14 32 32 H 1.08997 * 109.82898 * 238.77945 * 19 18 17 33 33 H 1.08997 * 109.90629 * 117.84979 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1262 1.4438 -0.0925 5 6 1.6389 2.1252 1.3091 6 6 2.3409 1.4541 2.4614 7 1 3.0063 0.6234 2.2784 8 6 2.1337 1.9006 3.7493 9 7 1.3230 2.9119 3.9722 10 14 3.0033 1.0683 5.1777 11 1 3.8536 -0.0356 4.6641 12 1 3.8535 2.0594 5.8849 13 1 1.9947 0.5198 6.1195 14 6 1.4269 2.2003 -1.1793 15 1 0.3421 2.2526 -1.0862 16 6 2.0404 3.6217 -1.3020 17 6 1.8800 3.8811 -2.8211 18 8 2.1116 2.6084 -3.4456 19 6 1.8326 1.5513 -2.5200 20 1 -0.3632 0.4343 -0.9314 21 1 -0.3633 -1.0237 0.0896 22 1 -0.3633 0.5895 0.8417 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.9239 3.1767 1.2726 26 1 0.5603 2.0457 1.4447 27 1 1.1774 3.2263 4.8782 28 1 1.4732 4.3462 -0.7176 29 1 3.0912 3.6223 -1.0122 30 1 2.6170 4.6088 -3.1606 31 1 0.8716 4.2322 -3.0405 32 1 2.7227 0.9382 -2.3797 33 1 1.0151 0.9357 -2.8952 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260400995.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:11 Heat of formation + Delta-G solvation = -94.304281 kcal Electronic energy + Delta-G solvation = -13216.103997 eV Core-core repulsion = 11046.946598 eV Total energy + Delta-G solvation = -2169.157398 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.63459 -37.54898 -34.61292 -32.45768 -30.39670 -29.93619 -26.62769 -24.70729 -23.04547 -22.65051 -19.80659 -18.42190 -17.49447 -16.88378 -16.42187 -15.94717 -15.40433 -14.88247 -14.46211 -14.19251 -13.96840 -13.38393 -13.10858 -12.94971 -12.61960 -12.55907 -12.40931 -12.20436 -11.87619 -11.78928 -11.43896 -11.22210 -10.80481 -10.73811 -10.48636 -10.41905 -8.15698 -6.23082 1.38380 1.39884 1.51564 2.42294 3.00744 3.18145 3.64904 3.85513 4.07256 4.29504 4.33309 4.38607 4.45531 4.57177 4.70444 4.82836 4.86341 4.96381 5.04071 5.07036 5.12929 5.19906 5.28688 5.39388 5.52398 5.58003 5.68928 5.86600 5.95631 6.07998 6.33687 6.93511 7.44374 8.95966 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047428 B = 0.009247 C = 0.008481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.223369 B = 3027.240723 C = 3300.744201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.063 4.063 4 H 0.049 0.951 5 C 0.035 3.965 6 C -0.525 4.525 7 H 0.057 0.943 8 C 0.000 4.000 9 N -0.933 5.933 10 Si 0.954 3.046 11 H -0.263 1.263 12 H -0.282 1.282 13 H -0.281 1.281 14 C -0.112 4.112 15 H 0.081 0.919 16 C -0.151 4.151 17 C 0.054 3.946 18 O -0.407 6.407 19 C 0.060 3.940 20 H 0.062 0.938 21 H 0.058 0.942 22 H 0.035 0.965 23 H 0.069 0.931 24 H 0.048 0.952 25 H -0.010 1.010 26 H 0.000 1.000 27 H 0.260 0.740 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.086 -2.079 -10.578 10.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.082 4.082 4 H 0.068 0.932 5 C -0.002 4.002 6 C -0.563 4.563 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.574 5.574 10 Si 0.779 3.221 11 H -0.188 1.188 12 H -0.208 1.208 13 H -0.207 1.207 14 C -0.131 4.131 15 H 0.099 0.901 16 C -0.189 4.189 17 C -0.022 4.022 18 O -0.327 6.327 19 C -0.016 4.016 20 H 0.081 0.919 21 H 0.077 0.923 22 H 0.054 0.946 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.009 0.991 26 H 0.018 0.982 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.083 -2.018 -10.660 10.850 hybrid contribution 0.222 -0.025 1.509 1.526 sum 0.139 -2.044 -9.151 9.377 Atomic orbital electron populations 1.21766 0.95959 1.01247 1.01211 1.21435 0.96329 0.95823 1.01015 1.21035 0.98153 0.95208 0.93768 0.93208 1.19047 0.95269 0.94213 0.91702 1.21687 1.26197 1.15865 0.92526 0.92496 1.25858 0.96239 0.95815 1.01830 1.70092 1.38411 1.27634 1.21301 0.85564 0.78505 0.78677 0.79324 1.18750 1.20762 1.20673 1.22745 1.00701 0.94871 0.94741 0.90106 1.23267 1.01644 0.97174 0.96768 1.23465 1.01803 0.85988 0.90924 1.88306 1.89921 1.15575 1.38903 1.23227 1.00767 0.89899 0.87675 0.91899 0.92276 0.94607 0.91218 0.93288 0.99149 0.98219 0.93103 0.90576 0.91410 0.88454 0.91189 0.91184 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.15 71.98 0.66 -4.10 16 2 C -0.11 -3.82 5.28 30.59 0.16 -3.66 16 3 C -0.06 -2.47 1.49 -10.79 -0.02 -2.48 16 4 H 0.05 2.01 8.11 -2.39 -0.02 1.99 16 5 C 0.03 1.74 4.24 29.85 0.13 1.87 16 6 C -0.52 -29.07 8.33 25.60 0.21 -28.85 16 7 H 0.06 3.07 7.08 -2.91 -0.02 3.05 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 9 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 10 Si 0.95 44.30 29.54 68.60 2.03 46.33 16 11 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 C -0.11 -3.67 1.90 -9.53 -0.02 -3.69 16 15 H 0.08 2.66 6.71 -2.39 -0.02 2.64 16 16 C -0.15 -4.76 5.70 32.05 0.18 -4.58 16 17 C 0.05 1.43 7.78 72.65 0.56 1.99 16 18 O -0.41 -12.29 11.36 -148.98 -1.69 -13.98 16 19 C 0.06 1.73 6.53 72.45 0.47 2.21 16 20 H 0.06 1.79 6.72 -2.39 -0.02 1.77 16 21 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.03 1.40 6.26 -2.39 -0.01 1.38 16 23 H 0.07 2.03 7.27 -2.38 -0.02 2.02 16 24 H 0.05 1.94 6.82 -2.39 -0.02 1.92 16 25 H -0.01 -0.54 7.31 -2.39 -0.02 -0.56 16 26 H 0.00 -0.02 6.26 -2.39 -0.01 -0.04 16 27 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 28 H 0.08 2.47 8.09 -2.39 -0.02 2.45 16 29 H 0.07 2.25 8.02 -2.39 -0.02 2.24 16 30 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.98 7.46 -2.39 -0.02 1.96 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -61.91 258.34 4.49 -57.42 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 1.06 Total: 7.09 kcal Atomic # 6 Polarization: -43.66 SS G_CDS: 2.81 Total: -40.85 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.28 Total: -56.01 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -1.69 Total: -13.98 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -61.91 4.49 -57.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400995.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.887 kcal (2) G-P(sol) polarization free energy of solvation -61.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds