Wall clock time and date at job start Mon Mar 30 2020 02:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47039 * 2 1 4 4 H 1.08999 * 109.47221 * 175.21493 * 3 2 1 5 5 C 1.50707 * 109.47006 * 55.21997 * 3 2 1 6 6 H 1.07990 * 120.00004 * 245.71965 * 5 3 2 7 7 C 1.37878 * 119.99590 * 65.71599 * 5 3 2 8 8 N 1.31513 * 120.00196 * 5.50996 * 7 5 3 9 9 Si 1.86802 * 119.99617 * 185.50103 * 7 5 3 10 10 H 1.48503 * 109.47078 * 180.02562 * 9 7 5 11 11 H 1.48493 * 109.47390 * 300.00472 * 9 7 5 12 12 H 1.48503 * 109.46884 * 60.00581 * 9 7 5 13 13 C 1.52996 * 109.47448 * 295.21971 * 3 2 1 14 14 C 1.53178 * 109.54557 * 304.64228 * 13 3 2 15 15 C 1.53100 * 109.15736 * 183.23895 * 14 13 3 16 16 O 1.42909 * 109.48715 * 57.47616 * 15 14 13 17 17 C 1.42902 * 114.09573 * 298.88392 * 16 15 14 18 18 C 1.53093 * 109.41444 * 61.16045 * 17 16 15 19 19 H 1.09000 * 109.47108 * 304.97738 * 1 2 3 20 20 H 1.08997 * 109.46949 * 64.98202 * 1 2 3 21 21 H 1.09005 * 109.46860 * 184.98336 * 1 2 3 22 22 H 1.09000 * 109.47032 * 240.00295 * 2 1 3 23 23 H 1.08997 * 109.47357 * 120.00631 * 2 1 3 24 24 H 0.96998 * 120.00126 * 355.14116 * 8 7 5 25 25 H 1.09006 * 109.54310 * 64.81603 * 13 3 2 26 26 H 1.08998 * 109.52090 * 303.05721 * 14 13 3 27 27 H 1.08998 * 109.51976 * 63.24535 * 14 13 3 28 28 H 1.08994 * 109.41225 * 297.48979 * 15 14 13 29 29 H 1.09009 * 109.48215 * 177.50236 * 15 14 13 30 30 H 1.09003 * 109.48165 * 301.18031 * 17 16 15 31 31 H 1.08994 * 109.47873 * 181.13908 * 17 16 15 32 32 H 1.09000 * 109.52363 * 182.48866 * 18 17 16 33 33 H 1.09005 * 109.57693 * 62.32106 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4437 0.0857 5 6 1.4433 2.1863 1.1670 6 1 0.7591 3.0036 0.9936 7 6 1.7708 1.8231 2.4562 8 7 2.6849 0.9014 2.6676 9 14 0.9165 2.6403 3.9024 10 1 1.4443 2.0779 5.1714 11 1 1.1713 4.1028 3.8659 12 1 -0.5450 2.3903 3.8196 13 6 1.6306 2.1283 -1.3049 14 6 2.1386 1.3093 -2.4955 15 6 1.7949 2.0441 -3.7940 16 8 2.3710 3.3517 -3.7686 17 6 1.8955 4.1781 -2.7042 18 6 2.2451 3.5303 -1.3619 19 1 -0.3633 0.5891 0.8420 20 1 -0.3633 0.4346 -0.9312 21 1 -0.3633 -1.0238 0.0893 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 3.0779 0.4272 1.9182 25 1 0.5441 2.2042 -1.3517 26 1 3.2195 1.1902 -2.4210 27 1 1.6622 0.3290 -2.4931 28 1 0.7122 2.1256 -3.8884 29 1 2.1931 1.4879 -4.6428 30 1 0.8139 4.2875 -2.7842 31 1 2.3660 5.1592 -2.7677 32 1 1.8447 4.1367 -0.5494 33 1 3.3281 3.4574 -1.2625 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260406195.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:13 Heat of formation + Delta-G solvation = -78.990305 kcal Electronic energy + Delta-G solvation = -13542.908612 eV Core-core repulsion = 11374.415277 eV Total energy + Delta-G solvation = -2168.493334 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.04382 -36.06477 -32.45694 -31.03992 -30.36119 -26.84935 -24.23408 -23.21657 -22.62622 -20.15940 -18.70561 -16.62558 -15.75212 -15.56922 -14.48666 -13.91534 -13.71874 -13.41801 -13.19333 -12.82193 -12.33156 -11.66228 -11.48153 -10.96964 -10.84719 -10.79354 -10.72990 -10.30577 -10.08592 -9.98557 -9.76927 -9.58626 -9.40069 -8.75956 -8.34082 -8.17775 -6.25971 -3.97291 3.44408 3.45288 3.63943 4.23818 4.55892 5.32299 5.39143 5.44483 5.51744 5.62009 5.67864 5.82589 5.98914 6.06907 6.22504 6.30938 6.35031 6.43996 6.52220 6.62652 6.77725 6.88842 6.94777 7.01498 7.26902 7.38942 7.53582 7.57662 7.69433 8.31773 8.50767 8.95126 9.72509 11.10368 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043212 B = 0.011404 C = 0.010033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.812277 B = 2454.778821 C = 2790.034361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.121 4.121 3 C 0.040 3.960 4 H 0.017 0.983 5 C -0.582 4.582 6 H 0.046 0.954 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 1.060 2.940 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.289 1.289 13 C -0.070 4.070 14 C -0.154 4.154 15 C 0.062 3.938 16 O -0.392 6.392 17 C 0.059 3.941 18 C -0.138 4.138 19 H 0.068 0.932 20 H 0.033 0.967 21 H 0.023 0.977 22 H 0.026 0.974 23 H 0.058 0.942 24 H 0.272 0.728 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 2.066 -8.506 9.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.159 4.159 3 C 0.021 3.979 4 H 0.035 0.965 5 C -0.620 4.620 6 H 0.065 0.935 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.889 3.111 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.216 1.216 13 C -0.088 4.088 14 C -0.192 4.192 15 C -0.014 4.014 16 O -0.311 6.311 17 C -0.017 4.017 18 C -0.176 4.176 19 H 0.087 0.913 20 H 0.052 0.948 21 H 0.042 0.958 22 H 0.045 0.955 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.831 2.204 -6.974 7.843 hybrid contribution -0.219 -0.220 -1.408 1.442 sum -3.050 1.984 -8.382 9.138 Atomic orbital electron populations 1.21624 0.97232 0.98612 1.01329 1.21671 0.95494 0.99738 0.98962 1.18845 0.95754 0.91422 0.91859 0.96511 1.21852 1.30058 1.18152 0.91940 0.93524 1.25645 0.95696 0.97044 1.00039 1.70780 1.24401 1.24306 1.35769 0.83672 0.75669 0.75576 0.76189 1.20950 1.21639 1.21580 1.21112 0.98908 0.93697 0.95117 1.22363 1.01795 0.99648 0.95358 1.22562 0.96960 0.83822 0.98089 1.87834 1.67893 1.24807 1.50586 1.22663 0.97962 0.93602 0.87497 1.22116 1.01413 0.97851 0.96228 0.91341 0.94754 0.95811 0.95537 0.92367 0.91653 0.92314 0.91858 0.91149 0.93906 0.89904 0.93912 0.89780 0.90238 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.33 37.16 0.35 -2.39 16 2 C -0.12 -2.73 5.05 -26.73 -0.14 -2.86 16 3 C 0.04 0.95 1.31 -91.77 -0.12 0.83 16 4 H 0.02 0.45 7.65 -51.93 -0.40 0.05 16 5 C -0.58 -15.43 6.15 -34.44 -0.21 -15.64 16 6 H 0.05 1.24 7.29 -52.49 -0.38 0.86 16 7 C 0.02 0.54 5.28 -17.82 -0.09 0.45 16 8 N -0.92 -27.06 13.20 55.43 0.73 -26.33 16 9 Si 1.06 24.87 29.91 -169.99 -5.08 19.78 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 C -0.07 -1.41 1.43 -90.44 -0.13 -1.54 16 14 C -0.15 -2.70 4.84 -26.59 -0.13 -2.83 16 15 C 0.06 0.97 6.84 37.21 0.25 1.22 16 16 O -0.39 -6.75 10.77 -35.23 -0.38 -7.12 16 17 C 0.06 0.96 6.84 37.21 0.25 1.22 16 18 C -0.14 -2.65 5.18 -26.59 -0.14 -2.79 16 19 H 0.07 1.58 6.89 -51.93 -0.36 1.23 16 20 H 0.03 0.65 6.92 -51.93 -0.36 0.29 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.03 0.54 6.16 -51.93 -0.32 0.22 16 23 H 0.06 1.46 6.17 -51.93 -0.32 1.14 16 24 H 0.27 7.98 5.62 -40.82 -0.23 7.75 16 25 H 0.06 1.21 6.92 -51.93 -0.36 0.85 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.07 1.19 6.45 -51.93 -0.34 0.85 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.60 7.19 -51.93 -0.37 1.23 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 251.72 15.07 3.79 3.79 Total: -1.00 -28.67 251.72 -6.23 -34.90 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.19 Total: -0.67 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -0.10 Total: -24.34 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.73 Total: -26.33 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.38 Total: -7.12 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.67 -6.23 -34.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260406195.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.089 kcal (2) G-P(sol) polarization free energy of solvation -28.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds