Wall clock time and date at job start Mon Mar 30 2020 02:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47039 * 2 1 4 4 H 1.08999 * 109.47221 * 175.21493 * 3 2 1 5 5 C 1.50707 * 109.47006 * 55.21997 * 3 2 1 6 6 H 1.07990 * 120.00004 * 245.71965 * 5 3 2 7 7 C 1.37878 * 119.99590 * 65.71599 * 5 3 2 8 8 N 1.31513 * 120.00196 * 5.50996 * 7 5 3 9 9 Si 1.86802 * 119.99617 * 185.50103 * 7 5 3 10 10 H 1.48503 * 109.47078 * 180.02562 * 9 7 5 11 11 H 1.48493 * 109.47390 * 300.00472 * 9 7 5 12 12 H 1.48503 * 109.46884 * 60.00581 * 9 7 5 13 13 C 1.52996 * 109.47448 * 295.21971 * 3 2 1 14 14 C 1.53178 * 109.54557 * 304.64228 * 13 3 2 15 15 C 1.53100 * 109.15736 * 183.23895 * 14 13 3 16 16 O 1.42909 * 109.48715 * 57.47616 * 15 14 13 17 17 C 1.42902 * 114.09573 * 298.88392 * 16 15 14 18 18 C 1.53093 * 109.41444 * 61.16045 * 17 16 15 19 19 H 1.09000 * 109.47108 * 304.97738 * 1 2 3 20 20 H 1.08997 * 109.46949 * 64.98202 * 1 2 3 21 21 H 1.09005 * 109.46860 * 184.98336 * 1 2 3 22 22 H 1.09000 * 109.47032 * 240.00295 * 2 1 3 23 23 H 1.08997 * 109.47357 * 120.00631 * 2 1 3 24 24 H 0.96998 * 120.00126 * 355.14116 * 8 7 5 25 25 H 1.09006 * 109.54310 * 64.81603 * 13 3 2 26 26 H 1.08998 * 109.52090 * 303.05721 * 14 13 3 27 27 H 1.08998 * 109.51976 * 63.24535 * 14 13 3 28 28 H 1.08994 * 109.41225 * 297.48979 * 15 14 13 29 29 H 1.09009 * 109.48215 * 177.50236 * 15 14 13 30 30 H 1.09003 * 109.48165 * 301.18031 * 17 16 15 31 31 H 1.08994 * 109.47873 * 181.13908 * 17 16 15 32 32 H 1.09000 * 109.52363 * 182.48866 * 18 17 16 33 33 H 1.09005 * 109.57693 * 62.32106 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4437 0.0857 5 6 1.4433 2.1863 1.1670 6 1 0.7591 3.0036 0.9936 7 6 1.7708 1.8231 2.4562 8 7 2.6849 0.9014 2.6676 9 14 0.9165 2.6403 3.9024 10 1 1.4443 2.0779 5.1714 11 1 1.1713 4.1028 3.8659 12 1 -0.5450 2.3903 3.8196 13 6 1.6306 2.1283 -1.3049 14 6 2.1386 1.3093 -2.4955 15 6 1.7949 2.0441 -3.7940 16 8 2.3710 3.3517 -3.7686 17 6 1.8955 4.1781 -2.7042 18 6 2.2451 3.5303 -1.3619 19 1 -0.3633 0.5891 0.8420 20 1 -0.3633 0.4346 -0.9312 21 1 -0.3633 -1.0238 0.0893 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 3.0779 0.4272 1.9182 25 1 0.5441 2.2042 -1.3517 26 1 3.2195 1.1902 -2.4210 27 1 1.6622 0.3290 -2.4931 28 1 0.7122 2.1256 -3.8884 29 1 2.1931 1.4879 -4.6428 30 1 0.8139 4.2875 -2.7842 31 1 2.3660 5.1592 -2.7677 32 1 1.8447 4.1367 -0.5494 33 1 3.3281 3.4574 -1.2625 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260406195.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:13 Heat of formation + Delta-G solvation = -95.836254 kcal Electronic energy + Delta-G solvation = -13543.639107 eV Core-core repulsion = 11374.415277 eV Total energy + Delta-G solvation = -2169.223830 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.49363 -37.77542 -34.29987 -32.71791 -31.83369 -28.63686 -26.12471 -24.76021 -24.15193 -21.78755 -20.44420 -18.61894 -17.21003 -16.86300 -15.96362 -15.63020 -15.42627 -15.09987 -14.94391 -14.49840 -13.89769 -13.37818 -13.09048 -12.69759 -12.61482 -12.42871 -12.22678 -11.99134 -11.90046 -11.77876 -11.40257 -11.18462 -11.01878 -10.38352 -10.34341 -10.15180 -8.46159 -6.17330 1.53074 1.59831 1.77805 2.61087 3.00151 3.30381 3.92127 3.97640 4.12521 4.16875 4.34914 4.48589 4.52461 4.54070 4.64542 4.73775 4.79504 4.89103 4.98229 5.06324 5.14599 5.19180 5.30361 5.36335 5.45950 5.61253 5.69766 5.82282 6.22069 6.28888 6.37453 6.77987 7.59979 8.90431 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043212 B = 0.011404 C = 0.010033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.812277 B = 2454.778821 C = 2790.034361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.117 4.117 3 C 0.037 3.963 4 H -0.022 1.022 5 C -0.578 4.578 6 H 0.044 0.956 7 C -0.032 4.032 8 N -0.946 5.946 9 Si 1.101 2.899 10 H -0.291 1.291 11 H -0.274 1.274 12 H -0.271 1.271 13 C -0.066 4.066 14 C -0.149 4.149 15 C 0.063 3.937 16 O -0.403 6.403 17 C 0.066 3.934 18 C -0.137 4.137 19 H 0.041 0.959 20 H 0.055 0.945 21 H 0.044 0.956 22 H 0.049 0.951 23 H 0.025 0.975 24 H 0.260 0.740 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.379 2.594 -10.041 11.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.155 4.155 3 C 0.019 3.981 4 H -0.004 1.004 5 C -0.617 4.617 6 H 0.063 0.937 7 C -0.229 4.229 8 N -0.585 5.585 9 Si 0.925 3.075 10 H -0.217 1.217 11 H -0.200 1.200 12 H -0.197 1.197 13 C -0.085 4.085 14 C -0.187 4.187 15 C -0.013 4.013 16 O -0.322 6.322 17 C -0.010 4.010 18 C -0.175 4.175 19 H 0.061 0.939 20 H 0.074 0.926 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.277 2.740 -8.534 9.931 hybrid contribution 0.257 -0.397 -0.958 1.068 sum -4.020 2.343 -9.492 10.571 Atomic orbital electron populations 1.21523 0.95502 0.99699 1.01276 1.21581 0.96923 0.98513 0.98453 1.18827 0.93216 0.92690 0.93416 1.00377 1.22148 1.29056 1.17633 0.92825 0.93728 1.26904 0.95746 0.97122 1.03158 1.70889 1.26302 1.26001 1.35317 0.83132 0.75684 0.75538 0.73172 1.21707 1.20000 1.19664 1.21014 0.98931 0.94340 0.94209 1.22304 1.00874 1.00007 0.95492 1.22699 0.98135 0.83037 0.97449 1.87835 1.68446 1.25515 1.50408 1.22656 0.99135 0.93976 0.85268 1.22069 0.99953 0.97499 0.98005 0.93947 0.92591 0.93716 0.93269 0.95634 0.92951 0.92143 0.93246 0.90168 0.92243 0.87233 0.92315 0.87769 0.91795 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.33 71.98 0.67 -4.28 16 2 C -0.12 -5.27 5.05 30.60 0.15 -5.12 16 3 C 0.04 1.80 1.31 -11.54 -0.02 1.78 16 4 H -0.02 -1.22 7.65 -2.39 -0.02 -1.24 16 5 C -0.58 -31.03 6.15 25.60 0.16 -30.88 16 6 H 0.04 2.37 7.29 -2.92 -0.02 2.35 16 7 C -0.03 -1.78 5.28 84.66 0.45 -1.33 16 8 N -0.95 -57.65 13.20 21.45 0.28 -57.37 16 9 Si 1.10 50.19 29.91 68.60 2.05 52.24 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 13 C -0.07 -2.61 1.43 -10.67 -0.02 -2.63 16 14 C -0.15 -4.93 4.84 30.69 0.15 -4.79 16 15 C 0.06 1.73 6.84 72.02 0.49 2.22 16 16 O -0.40 -12.64 10.77 -148.98 -1.60 -14.24 16 17 C 0.07 1.98 6.84 72.01 0.49 2.47 16 18 C -0.14 -5.18 5.18 30.69 0.16 -5.02 16 19 H 0.04 1.91 6.89 -2.39 -0.02 1.90 16 20 H 0.06 1.99 6.92 -2.39 -0.02 1.97 16 21 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.05 1.96 6.16 -2.39 -0.01 1.95 16 23 H 0.02 1.30 6.17 -2.39 -0.01 1.29 16 24 H 0.26 15.98 5.62 -92.71 -0.52 15.46 16 25 H 0.06 2.36 6.92 -2.38 -0.02 2.35 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.08 2.48 6.45 -2.39 -0.02 2.47 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.06 2.57 7.19 -2.39 -0.02 2.55 16 33 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -62.18 251.72 4.74 -57.44 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.31 Total: 9.51 kcal Atomic # 6 Polarization: -50.27 SS G_CDS: 2.69 Total: -47.58 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.28 Total: -57.37 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.60 Total: -14.24 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.05 Total: 52.24 kcal Total: -62.18 4.74 -57.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260406195.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.397 kcal (2) G-P(sol) polarization free energy of solvation -62.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds