Wall clock time and date at job start Mon Mar 30 2020 02:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47330 * 2 1 4 4 C 1.53001 * 109.46897 * 120.00036 * 2 1 3 5 5 H 1.09002 * 109.47194 * 305.44410 * 4 2 1 6 6 C 1.53008 * 109.47085 * 185.44324 * 4 2 1 7 7 C 1.50699 * 109.47041 * 301.81752 * 6 4 2 8 8 H 1.07998 * 120.00171 * 1.12087 * 7 6 4 9 9 C 1.37870 * 119.99956 * 181.11825 * 7 6 4 10 10 N 1.31510 * 120.00010 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00266 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46858 * 60.00162 * 11 9 7 13 13 H 1.48489 * 109.47415 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47004 * 300.00265 * 11 9 7 15 15 C 1.52997 * 109.47057 * 65.44292 * 4 2 1 16 16 C 1.54035 * 113.81783 * 276.18578 * 15 4 2 17 17 O 1.44180 * 85.51870 * 223.19416 * 16 15 4 18 18 C 1.44179 * 93.33971 * 24.19187 * 17 16 15 19 19 H 1.09000 * 109.47422 * 300.00431 * 1 2 3 20 20 H 1.09000 * 109.47184 * 59.99683 * 1 2 3 21 21 H 1.09001 * 109.47730 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47043 * 239.99931 * 2 1 3 23 23 H 1.08999 * 109.47239 * 186.16563 * 3 2 1 24 24 H 1.08996 * 109.47528 * 306.17071 * 3 2 1 25 25 H 1.09006 * 109.47002 * 66.16555 * 3 2 1 26 26 H 1.08999 * 109.47015 * 61.81942 * 6 4 2 27 27 H 1.09004 * 109.46651 * 181.81831 * 6 4 2 28 28 H 0.97010 * 120.00130 * 179.97438 * 10 9 7 29 29 H 1.09006 * 113.00264 * 48.17763 * 15 4 2 30 30 H 1.08994 * 113.86415 * 337.34401 * 16 15 4 31 31 H 1.09003 * 113.86180 * 109.05355 * 16 15 4 32 32 H 1.09002 * 113.86883 * 221.65592 * 18 17 16 33 33 H 1.09003 * 113.86274 * 89.95482 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.5991 -0.2668 2.1366 6 6 3.5638 -0.6039 1.3196 7 6 4.1711 -1.1922 0.0722 8 1 3.5332 -1.5919 -0.7023 9 6 5.5410 -1.2203 -0.0805 10 7 6.3178 -0.7340 0.8627 11 14 6.2938 -1.9502 -1.6265 12 1 5.8160 -1.1962 -2.8132 13 1 7.7739 -1.8612 -1.5459 14 1 5.8899 -3.3740 -1.7490 15 6 1.6447 -2.1978 1.1827 16 6 0.2150 -2.4821 1.6807 17 8 0.7972 -3.6147 2.3569 18 6 2.1109 -3.0220 2.3976 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 3.1244 1.4444 -0.1104 24 1 1.5893 1.9872 -0.8295 25 1 1.7696 1.9234 0.9401 26 1 3.8440 0.4465 1.3996 27 1 3.9300 -1.1451 2.1921 28 1 7.2818 -0.7541 0.7554 29 1 1.8782 -2.6584 0.2227 30 1 -0.1770 -1.7201 2.3542 31 1 -0.4824 -2.7527 0.8879 32 1 2.9171 -3.7205 2.1736 33 1 2.2977 -2.4248 3.2902 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260416750.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:46 Heat of formation + Delta-G solvation = -40.576371 kcal Electronic energy + Delta-G solvation = -13436.564182 eV Core-core repulsion = 11269.736601 eV Total energy + Delta-G solvation = -2166.827581 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.98750 -36.36360 -32.70147 -30.48924 -28.42159 -26.19202 -25.64479 -24.52746 -21.93045 -19.47906 -18.95575 -16.18812 -15.80568 -15.31180 -14.91079 -14.51985 -13.59684 -13.29996 -12.75997 -12.23726 -12.03261 -11.97200 -11.68787 -11.28029 -11.06193 -10.92393 -10.65391 -10.40870 -10.35593 -10.27966 -9.95397 -9.34819 -9.04673 -8.91375 -8.77806 -8.31664 -5.98263 -3.99037 3.32848 3.38118 3.40191 4.28862 4.46904 5.00237 5.36661 5.39487 5.60127 5.67655 5.71413 5.79091 5.86121 6.07244 6.20623 6.21891 6.32984 6.39478 6.42401 6.61821 6.66411 6.69582 6.76820 6.89386 7.02289 7.16306 7.25544 7.69149 7.79955 8.01312 8.45330 9.06591 9.64439 11.12886 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030475 B = 0.012822 C = 0.010617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.578720 B = 2183.161056 C = 2636.569868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.080 4.080 3 C -0.140 4.140 4 C -0.074 4.074 5 H 0.044 0.956 6 C 0.025 3.975 7 C -0.507 4.507 8 H 0.055 0.945 9 C 0.057 3.943 10 N -0.896 5.896 11 Si 0.884 3.116 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.278 1.278 15 C -0.123 4.123 16 C 0.029 3.971 17 O -0.398 6.398 18 C 0.045 3.955 19 H 0.045 0.955 20 H 0.043 0.957 21 H 0.052 0.948 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.036 0.964 25 H 0.040 0.960 26 H 0.021 0.979 27 H 0.015 0.985 28 H 0.259 0.741 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.198 0.364 -0.182 9.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 C -0.198 4.198 4 C -0.092 4.092 5 H 0.062 0.938 6 C -0.012 4.012 7 C -0.545 4.545 8 H 0.074 0.926 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.712 3.288 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.204 1.204 15 C -0.141 4.141 16 C -0.047 4.047 17 O -0.317 6.317 18 C -0.032 4.032 19 H 0.064 0.936 20 H 0.062 0.938 21 H 0.071 0.929 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.112 0.145 -0.043 9.113 hybrid contribution 0.656 -0.212 -0.924 1.153 sum -8.456 -0.067 -0.967 8.511 Atomic orbital electron populations 1.22045 0.97458 1.00947 1.00468 1.21001 0.92880 0.96380 0.99594 1.21793 1.02882 0.95646 0.99442 1.21303 1.00037 0.92208 0.95674 0.93770 1.19177 0.87555 0.97362 0.97085 1.21155 0.91045 1.38835 1.03501 0.92641 1.24990 0.97555 0.95704 0.96106 1.69947 1.04086 1.46410 1.33128 0.86785 0.78122 0.79784 0.84077 1.20356 1.21468 1.20359 1.24121 0.92321 0.97798 0.99852 1.24186 0.97348 0.88081 0.95124 1.89565 1.23737 1.36989 1.81458 1.23915 0.85877 0.95489 0.97872 0.93574 0.93784 0.92940 0.90638 0.90815 0.94504 0.94098 0.96092 0.96625 0.93092 0.88150 0.90993 0.90246 0.89267 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.58 37.15 0.32 -1.88 16 2 C -0.08 -1.42 2.12 -90.62 -0.19 -1.62 16 3 C -0.14 -2.49 8.47 37.16 0.31 -2.17 16 4 C -0.07 -1.41 1.60 -90.62 -0.14 -1.56 16 5 H 0.04 0.81 7.93 -51.93 -0.41 0.40 16 6 C 0.03 0.60 4.06 -27.88 -0.11 0.49 16 7 C -0.51 -13.23 7.74 -34.44 -0.27 -13.49 16 8 H 0.06 1.41 5.87 -52.49 -0.31 1.11 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 11 Si 0.88 21.19 29.54 -169.99 -5.02 16.17 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C -0.12 -2.24 2.56 -89.54 -0.23 -2.46 16 16 C 0.03 0.46 6.75 37.61 0.25 0.72 16 17 O -0.40 -7.38 12.45 -35.23 -0.44 -7.81 16 18 C 0.04 0.83 7.82 37.61 0.29 1.12 16 19 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 20 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.72 5.31 -51.93 -0.28 0.44 16 22 H 0.08 1.47 6.68 -51.93 -0.35 1.13 16 23 H 0.07 1.52 6.66 -51.93 -0.35 1.17 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.02 0.54 6.59 -51.93 -0.34 0.20 16 27 H 0.02 0.40 7.35 -51.93 -0.38 0.02 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.10 1.96 7.41 -51.93 -0.38 1.57 16 30 H 0.07 1.05 7.96 -51.93 -0.41 0.64 16 31 H 0.08 1.12 7.34 -51.93 -0.38 0.74 16 32 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 LS Contribution 257.93 15.07 3.89 3.89 Total: -1.00 -28.18 257.93 -5.95 -34.13 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.26 Total: -1.66 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 0.14 Total: -19.38 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.74 Total: -25.34 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.44 Total: -7.81 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.18 -5.95 -34.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416750.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.445 kcal (2) G-P(sol) polarization free energy of solvation -28.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds