Wall clock time and date at job start Mon Mar 30 2020 02:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47330 * 2 1 4 4 C 1.53001 * 109.46897 * 120.00036 * 2 1 3 5 5 H 1.09002 * 109.47194 * 305.44410 * 4 2 1 6 6 C 1.53008 * 109.47085 * 185.44324 * 4 2 1 7 7 C 1.50699 * 109.47041 * 301.81752 * 6 4 2 8 8 H 1.07998 * 120.00171 * 1.12087 * 7 6 4 9 9 C 1.37870 * 119.99956 * 181.11825 * 7 6 4 10 10 N 1.31510 * 120.00010 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00266 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46858 * 60.00162 * 11 9 7 13 13 H 1.48489 * 109.47415 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47004 * 300.00265 * 11 9 7 15 15 C 1.52997 * 109.47057 * 65.44292 * 4 2 1 16 16 C 1.54035 * 113.81783 * 276.18578 * 15 4 2 17 17 O 1.44180 * 85.51870 * 223.19416 * 16 15 4 18 18 C 1.44179 * 93.33971 * 24.19187 * 17 16 15 19 19 H 1.09000 * 109.47422 * 300.00431 * 1 2 3 20 20 H 1.09000 * 109.47184 * 59.99683 * 1 2 3 21 21 H 1.09001 * 109.47730 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47043 * 239.99931 * 2 1 3 23 23 H 1.08999 * 109.47239 * 186.16563 * 3 2 1 24 24 H 1.08996 * 109.47528 * 306.17071 * 3 2 1 25 25 H 1.09006 * 109.47002 * 66.16555 * 3 2 1 26 26 H 1.08999 * 109.47015 * 61.81942 * 6 4 2 27 27 H 1.09004 * 109.46651 * 181.81831 * 6 4 2 28 28 H 0.97010 * 120.00130 * 179.97438 * 10 9 7 29 29 H 1.09006 * 113.00264 * 48.17763 * 15 4 2 30 30 H 1.08994 * 113.86415 * 337.34401 * 16 15 4 31 31 H 1.09003 * 113.86180 * 109.05355 * 16 15 4 32 32 H 1.09002 * 113.86883 * 221.65592 * 18 17 16 33 33 H 1.09003 * 113.86274 * 89.95482 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.5991 -0.2668 2.1366 6 6 3.5638 -0.6039 1.3196 7 6 4.1711 -1.1922 0.0722 8 1 3.5332 -1.5919 -0.7023 9 6 5.5410 -1.2203 -0.0805 10 7 6.3178 -0.7340 0.8627 11 14 6.2938 -1.9502 -1.6265 12 1 5.8160 -1.1962 -2.8132 13 1 7.7739 -1.8612 -1.5459 14 1 5.8899 -3.3740 -1.7490 15 6 1.6447 -2.1978 1.1827 16 6 0.2150 -2.4821 1.6807 17 8 0.7972 -3.6147 2.3569 18 6 2.1109 -3.0220 2.3976 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 3.1244 1.4444 -0.1104 24 1 1.5893 1.9872 -0.8295 25 1 1.7696 1.9234 0.9401 26 1 3.8440 0.4465 1.3996 27 1 3.9300 -1.1451 2.1921 28 1 7.2818 -0.7541 0.7554 29 1 1.8782 -2.6584 0.2227 30 1 -0.1770 -1.7201 2.3542 31 1 -0.4824 -2.7527 0.8879 32 1 2.9171 -3.7205 2.1736 33 1 2.2977 -2.4248 3.2902 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260416750.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:46 Heat of formation + Delta-G solvation = -57.344320 kcal Electronic energy + Delta-G solvation = -13437.291295 eV Core-core repulsion = 11269.736601 eV Total energy + Delta-G solvation = -2167.554694 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.42289 -37.89302 -34.68973 -32.07259 -30.03909 -27.69146 -26.97131 -26.33292 -23.63671 -20.89081 -20.57730 -18.08191 -17.24322 -16.80928 -16.57866 -16.26843 -15.14467 -14.79096 -14.20757 -14.13192 -13.60558 -13.37764 -13.02120 -12.90900 -12.72287 -12.59686 -12.31365 -12.23325 -12.02562 -11.72766 -11.53778 -10.83078 -10.74718 -10.58467 -10.50466 -10.30770 -8.10475 -6.15913 1.41461 1.41963 1.48982 2.45202 2.90106 3.23766 3.57729 3.95379 4.22827 4.37171 4.38582 4.48300 4.49650 4.74319 4.79741 4.89195 4.93876 5.00349 5.16174 5.18850 5.23254 5.26011 5.38593 5.40258 5.46305 5.62159 5.66372 5.78446 5.86715 5.97236 6.39982 6.99509 7.50938 9.01144 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030475 B = 0.012822 C = 0.010617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.578720 B = 2183.161056 C = 2636.569868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.137 4.137 4 C -0.065 4.065 5 H 0.058 0.942 6 C 0.030 3.970 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.000 4.000 10 N -0.935 5.935 11 Si 0.945 3.055 12 H -0.270 1.270 13 H -0.291 1.291 14 H -0.271 1.271 15 C -0.126 4.126 16 C 0.043 3.957 17 O -0.412 6.412 18 C 0.041 3.959 19 H 0.059 0.941 20 H 0.058 0.942 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.033 0.967 24 H 0.058 0.942 25 H 0.050 0.950 26 H -0.004 1.004 27 H -0.010 1.010 28 H 0.258 0.742 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.284 0.257 -0.967 11.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 C -0.194 4.194 4 C -0.083 4.083 5 H 0.076 0.924 6 C -0.007 4.007 7 C -0.541 4.541 8 H 0.078 0.922 9 C -0.196 4.196 10 N -0.577 5.577 11 Si 0.771 3.229 12 H -0.195 1.195 13 H -0.216 1.216 14 H -0.196 1.196 15 C -0.145 4.145 16 C -0.033 4.033 17 O -0.331 6.331 18 C -0.035 4.035 19 H 0.078 0.922 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.014 0.986 27 H 0.008 0.992 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.218 0.035 -0.839 11.250 hybrid contribution 1.293 -0.150 -0.655 1.458 sum -9.925 -0.115 -1.495 10.037 Atomic orbital electron populations 1.21952 0.94059 1.02137 1.01948 1.20962 0.95691 0.95592 0.97582 1.21735 1.00393 0.96348 1.00931 1.21175 0.96354 0.93547 0.97261 0.92386 1.19056 0.91300 0.95064 0.95231 1.21488 0.91131 1.37495 1.04027 0.92165 1.25786 0.98392 0.96494 0.98961 1.70081 1.04139 1.48315 1.35167 0.85805 0.77049 0.79271 0.80764 1.19496 1.21645 1.19632 1.24071 0.94813 0.96573 0.99010 1.24332 0.95861 0.87499 0.95582 1.89554 1.23539 1.38192 1.81846 1.23892 0.85936 0.95393 0.98309 0.92180 0.92291 0.91888 0.92778 0.94742 0.92309 0.93080 0.98588 0.99209 0.93343 0.89637 0.88955 0.87752 0.90540 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.58 71.98 0.62 -2.97 16 2 C -0.08 -2.69 2.12 -10.80 -0.02 -2.71 16 3 C -0.14 -4.69 8.47 71.98 0.61 -4.08 16 4 C -0.06 -2.42 1.60 -10.79 -0.02 -2.44 16 5 H 0.06 2.01 7.93 -2.39 -0.02 1.99 16 6 C 0.03 1.49 4.06 29.85 0.12 1.61 16 7 C -0.50 -26.63 7.74 25.60 0.20 -26.43 16 8 H 0.06 3.08 5.87 -2.91 -0.02 3.06 16 9 C 0.00 0.03 5.46 84.65 0.46 0.49 16 10 N -0.94 -55.95 13.29 21.44 0.28 -55.67 16 11 Si 0.94 43.87 29.54 68.60 2.03 45.90 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 C -0.13 -4.42 2.56 -10.09 -0.03 -4.45 16 16 C 0.04 1.22 6.75 72.27 0.49 1.71 16 17 O -0.41 -14.41 12.45 -148.98 -1.86 -16.26 16 18 C 0.04 1.50 7.82 72.28 0.57 2.07 16 19 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 20 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.06 1.44 5.31 -2.39 -0.01 1.43 16 22 H 0.05 2.05 6.68 -2.39 -0.02 2.03 16 23 H 0.03 1.43 6.66 -2.39 -0.02 1.41 16 24 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.00 -0.22 6.59 -2.39 -0.02 -0.24 16 27 H -0.01 -0.56 7.35 -2.38 -0.02 -0.58 16 28 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 29 H 0.09 3.25 7.41 -2.38 -0.02 3.23 16 30 H 0.09 2.28 7.96 -2.39 -0.02 2.26 16 31 H 0.10 2.47 7.34 -2.39 -0.02 2.45 16 32 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.08 2.79 8.04 -2.39 -0.02 2.77 16 Total: -1.00 -60.74 257.93 4.52 -56.22 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.07 Total: 7.01 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 3.00 Total: -37.21 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.28 Total: -55.67 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -1.86 Total: -16.26 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -60.74 4.52 -56.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416750.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.121 kcal (2) G-P(sol) polarization free energy of solvation -60.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds