Wall clock time and date at job start Mon Mar 30 2020 02:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47041 * 2 1 4 4 C 1.53000 * 109.46767 * 119.99830 * 2 1 3 5 5 H 1.09008 * 109.47242 * 53.52664 * 4 2 1 6 6 C 1.53001 * 109.47055 * 173.52258 * 4 2 1 7 7 C 1.50697 * 109.47347 * 294.89507 * 6 4 2 8 8 H 1.08003 * 120.00075 * 354.90803 * 7 6 4 9 9 C 1.37874 * 120.00066 * 174.90430 * 7 6 4 10 10 N 1.31521 * 119.99853 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00078 * 180.27479 * 9 7 6 12 12 H 1.48494 * 109.46946 * 179.72641 * 11 9 7 13 13 H 1.48497 * 109.46986 * 299.72776 * 11 9 7 14 14 H 1.48501 * 109.46689 * 59.73027 * 11 9 7 15 15 C 1.52997 * 109.47342 * 293.52752 * 4 2 1 16 16 C 1.54036 * 113.81946 * 162.79737 * 15 4 2 17 17 O 1.44451 * 85.42279 * 223.23413 * 16 15 4 18 18 C 1.44179 * 93.37997 * 24.08571 * 17 16 15 19 19 H 1.08994 * 109.47090 * 308.37784 * 1 2 3 20 20 H 1.09004 * 109.46735 * 68.37608 * 1 2 3 21 21 H 1.08996 * 109.47344 * 188.37114 * 1 2 3 22 22 H 1.09002 * 109.47289 * 239.99528 * 2 1 3 23 23 H 1.09004 * 109.46949 * 64.65423 * 3 2 1 24 24 H 1.09004 * 109.46814 * 184.64928 * 3 2 1 25 25 H 1.08991 * 109.47283 * 304.65382 * 3 2 1 26 26 H 1.09007 * 109.46956 * 174.89208 * 6 4 2 27 27 H 1.09003 * 109.46919 * 54.89950 * 6 4 2 28 28 H 0.97001 * 119.99705 * 179.97438 * 10 9 7 29 29 H 1.09011 * 112.99517 * 294.61827 * 15 4 2 30 30 H 1.08999 * 113.86257 * 337.34044 * 16 15 4 31 31 H 1.08994 * 113.86598 * 109.04602 * 16 15 4 32 32 H 1.09002 * 113.86354 * 221.76513 * 18 17 16 33 33 H 1.08996 * 113.86352 * 90.06252 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5851 -1.7100 1.3091 6 6 3.5613 -0.8637 1.1707 7 6 3.9226 -1.7644 0.0177 8 1 3.1449 -2.2579 -0.5463 9 6 5.2459 -1.9584 -0.3171 10 7 6.1929 -1.3578 0.3700 11 14 5.6934 -3.0688 -1.7511 12 1 7.1697 -3.1047 -1.9073 13 1 5.1896 -4.4411 -1.4904 14 1 5.0766 -2.5430 -2.9955 15 6 1.6670 0.0878 2.4932 16 6 1.7470 -0.7158 3.8049 17 8 0.4948 -0.0770 4.1372 18 6 0.1512 0.1597 2.7571 19 1 -0.3633 0.6380 0.8056 20 1 -0.3633 0.3787 -0.9554 21 1 -0.3634 -1.0167 0.1496 22 1 1.8934 -0.5139 -0.8899 23 1 1.7463 1.9317 0.9288 24 1 3.1269 1.4436 -0.0833 25 1 1.6102 1.9798 -0.8453 26 1 3.9343 -1.2952 2.0996 27 1 4.0108 0.1178 1.0198 28 1 7.1239 -1.4946 0.1346 29 1 2.1681 1.0549 2.5382 30 1 1.6690 -1.7942 3.6669 31 1 2.5763 -0.4257 4.4499 32 1 -0.2824 1.1426 2.5729 33 1 -0.4152 -0.6508 2.2984 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260416754.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:48 Heat of formation + Delta-G solvation = -36.740936 kcal Electronic energy + Delta-G solvation = -13352.649286 eV Core-core repulsion = 11185.988022 eV Total energy + Delta-G solvation = -2166.661264 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.18702 -36.36461 -32.77041 -30.34246 -28.42968 -26.81620 -25.80229 -24.52408 -21.63869 -20.09423 -18.43973 -16.39168 -16.07477 -15.42191 -14.76006 -14.41215 -13.74218 -13.52916 -12.92746 -12.38068 -12.21269 -12.10083 -11.54912 -11.24879 -10.99209 -10.91148 -10.77955 -10.57686 -10.44483 -10.14765 -9.76857 -9.42366 -9.30660 -9.00180 -8.78491 -8.32719 -5.99185 -4.00449 3.32510 3.37499 3.39559 4.13611 4.45672 4.82699 5.27660 5.36581 5.56614 5.60256 5.68326 5.71530 5.72604 5.91066 6.08320 6.09412 6.22734 6.29552 6.38129 6.45768 6.57049 6.57785 6.73174 6.83234 6.99066 7.09536 7.24144 7.69496 7.83215 8.01263 8.43943 9.05669 9.62903 11.11902 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041485 B = 0.010311 C = 0.009238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.777430 B = 2715.012737 C = 3030.173223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.074 4.074 5 H 0.057 0.943 6 C 0.027 3.973 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.057 3.943 10 N -0.896 5.896 11 Si 0.887 3.113 12 H -0.288 1.288 13 H -0.278 1.278 14 H -0.277 1.277 15 C -0.143 4.143 16 C 0.039 3.961 17 O -0.398 6.398 18 C 0.034 3.966 19 H 0.055 0.945 20 H 0.043 0.957 21 H 0.048 0.952 22 H 0.081 0.919 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.010 0.990 27 H 0.025 0.975 28 H 0.260 0.740 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.093 3.076 1.419 9.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.102 4.102 3 C -0.201 4.201 4 C -0.092 4.092 5 H 0.076 0.924 6 C -0.009 4.009 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.143 4.143 10 N -0.535 5.535 11 Si 0.716 3.284 12 H -0.214 1.214 13 H -0.203 1.203 14 H -0.203 1.203 15 C -0.161 4.161 16 C -0.037 4.037 17 O -0.318 6.318 18 C -0.042 4.042 19 H 0.074 0.926 20 H 0.062 0.938 21 H 0.068 0.932 22 H 0.099 0.901 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.029 0.971 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.027 3.159 1.674 9.710 hybrid contribution 0.505 -0.675 -1.004 1.311 sum -8.523 2.484 0.671 8.903 Atomic orbital electron populations 1.22214 0.97456 1.00956 1.00769 1.21011 0.93091 0.96208 0.99840 1.21867 1.02289 0.96106 0.99819 1.21336 1.00425 0.96330 0.91139 0.92415 1.19138 0.87837 0.97415 0.96557 1.21187 0.91627 1.27570 1.14871 0.92786 1.24994 0.96737 0.96038 0.96579 1.69951 0.99920 1.43377 1.40272 0.86732 0.77217 0.81326 0.83173 1.21383 1.20342 1.20310 1.24360 0.94778 1.00641 0.96327 1.24021 0.86508 0.97620 0.95570 1.89620 1.38055 1.78439 1.25666 1.24257 0.97480 1.00808 0.81635 0.92611 0.93770 0.93248 0.90075 0.93605 0.91588 0.94224 0.97120 0.95715 0.93038 0.88481 0.90221 0.89631 0.90041 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 7.76 37.16 0.29 -1.98 16 2 C -0.08 -1.48 2.59 -90.62 -0.23 -1.71 16 3 C -0.14 -2.43 8.54 37.16 0.32 -2.12 16 4 C -0.07 -1.42 1.40 -90.62 -0.13 -1.55 16 5 H 0.06 1.14 8.04 -51.92 -0.42 0.72 16 6 C 0.03 0.67 4.31 -27.88 -0.12 0.55 16 7 C -0.51 -13.93 8.21 -34.44 -0.28 -14.21 16 8 H 0.05 1.43 7.30 -52.48 -0.38 1.05 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 11 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 15 C -0.14 -2.42 2.46 -89.54 -0.22 -2.64 16 16 C 0.04 0.66 8.57 37.64 0.32 0.98 16 17 O -0.40 -6.87 12.46 -35.23 -0.44 -7.31 16 18 C 0.03 0.52 6.23 37.64 0.23 0.75 16 19 H 0.06 0.73 4.85 -51.93 -0.25 0.48 16 20 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.69 7.83 -51.93 -0.41 0.29 16 22 H 0.08 1.64 6.91 -51.93 -0.36 1.28 16 23 H 0.04 0.71 6.20 -51.93 -0.32 0.39 16 24 H 0.07 1.28 6.73 -51.93 -0.35 0.93 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.01 0.28 7.95 -51.93 -0.41 -0.14 16 27 H 0.02 0.64 6.50 -51.93 -0.34 0.31 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.10 1.67 6.77 -51.92 -0.35 1.31 16 30 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.09 7.41 -51.93 -0.38 0.70 16 33 H 0.08 1.13 6.81 -51.93 -0.35 0.77 16 LS Contribution 256.20 15.07 3.86 3.86 Total: -1.00 -28.91 256.20 -5.93 -34.84 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.15 Total: -1.68 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 0.08 Total: -20.41 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.44 Total: -7.31 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.91 -5.93 -34.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416754.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.896 kcal (2) G-P(sol) polarization free energy of solvation -28.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds