Wall clock time and date at job start Mon Mar 30 2020 02:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47041 * 2 1 4 4 C 1.53000 * 109.46767 * 119.99830 * 2 1 3 5 5 H 1.09008 * 109.47242 * 53.52664 * 4 2 1 6 6 C 1.53001 * 109.47055 * 173.52258 * 4 2 1 7 7 C 1.50697 * 109.47347 * 294.89507 * 6 4 2 8 8 H 1.08003 * 120.00075 * 354.90803 * 7 6 4 9 9 C 1.37874 * 120.00066 * 174.90430 * 7 6 4 10 10 N 1.31521 * 119.99853 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00078 * 180.27479 * 9 7 6 12 12 H 1.48494 * 109.46946 * 179.72641 * 11 9 7 13 13 H 1.48497 * 109.46986 * 299.72776 * 11 9 7 14 14 H 1.48501 * 109.46689 * 59.73027 * 11 9 7 15 15 C 1.52997 * 109.47342 * 293.52752 * 4 2 1 16 16 C 1.54036 * 113.81946 * 162.79737 * 15 4 2 17 17 O 1.44451 * 85.42279 * 223.23413 * 16 15 4 18 18 C 1.44179 * 93.37997 * 24.08571 * 17 16 15 19 19 H 1.08994 * 109.47090 * 308.37784 * 1 2 3 20 20 H 1.09004 * 109.46735 * 68.37608 * 1 2 3 21 21 H 1.08996 * 109.47344 * 188.37114 * 1 2 3 22 22 H 1.09002 * 109.47289 * 239.99528 * 2 1 3 23 23 H 1.09004 * 109.46949 * 64.65423 * 3 2 1 24 24 H 1.09004 * 109.46814 * 184.64928 * 3 2 1 25 25 H 1.08991 * 109.47283 * 304.65382 * 3 2 1 26 26 H 1.09007 * 109.46956 * 174.89208 * 6 4 2 27 27 H 1.09003 * 109.46919 * 54.89950 * 6 4 2 28 28 H 0.97001 * 119.99705 * 179.97438 * 10 9 7 29 29 H 1.09011 * 112.99517 * 294.61827 * 15 4 2 30 30 H 1.08999 * 113.86257 * 337.34044 * 16 15 4 31 31 H 1.08994 * 113.86598 * 109.04602 * 16 15 4 32 32 H 1.09002 * 113.86354 * 221.76513 * 18 17 16 33 33 H 1.08996 * 113.86352 * 90.06252 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5851 -1.7100 1.3091 6 6 3.5613 -0.8637 1.1707 7 6 3.9226 -1.7644 0.0177 8 1 3.1449 -2.2579 -0.5463 9 6 5.2459 -1.9584 -0.3171 10 7 6.1929 -1.3578 0.3700 11 14 5.6934 -3.0688 -1.7511 12 1 7.1697 -3.1047 -1.9073 13 1 5.1896 -4.4411 -1.4904 14 1 5.0766 -2.5430 -2.9955 15 6 1.6670 0.0878 2.4932 16 6 1.7470 -0.7158 3.8049 17 8 0.4948 -0.0770 4.1372 18 6 0.1512 0.1597 2.7571 19 1 -0.3633 0.6380 0.8056 20 1 -0.3633 0.3787 -0.9554 21 1 -0.3634 -1.0167 0.1496 22 1 1.8934 -0.5139 -0.8899 23 1 1.7463 1.9317 0.9288 24 1 3.1269 1.4436 -0.0833 25 1 1.6102 1.9798 -0.8453 26 1 3.9343 -1.2952 2.0996 27 1 4.0108 0.1178 1.0198 28 1 7.1239 -1.4946 0.1346 29 1 2.1681 1.0549 2.5382 30 1 1.6690 -1.7942 3.6669 31 1 2.5763 -0.4257 4.4499 32 1 -0.2824 1.1426 2.5729 33 1 -0.4152 -0.6508 2.2984 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260416754.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:48 Heat of formation + Delta-G solvation = -54.299666 kcal Electronic energy + Delta-G solvation = -13353.410690 eV Core-core repulsion = 11185.988022 eV Total energy + Delta-G solvation = -2167.422668 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.53129 -37.86015 -34.80991 -31.92642 -30.03930 -28.19032 -27.07175 -26.33028 -23.43369 -21.45623 -19.90538 -18.34183 -17.49611 -16.85525 -16.41835 -16.11479 -15.25403 -14.90193 -14.46143 -14.06233 -13.74328 -13.54764 -13.06125 -12.94208 -12.61005 -12.54736 -12.24127 -12.14926 -12.09059 -11.77232 -11.39304 -11.10963 -10.74385 -10.64927 -10.45887 -10.38967 -8.14765 -6.22685 1.40008 1.41564 1.49119 2.42744 2.85053 3.18756 3.49157 3.91722 4.20361 4.34862 4.35730 4.42071 4.48045 4.63797 4.69241 4.85588 4.92112 4.97176 5.05612 5.13020 5.20809 5.26538 5.33307 5.35878 5.40473 5.56112 5.66383 5.73039 5.88646 5.96743 6.33474 6.93663 7.44824 8.96449 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041485 B = 0.010311 C = 0.009238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.777430 B = 2715.012737 C = 3030.173223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.063 4.063 5 H 0.054 0.946 6 C 0.034 3.966 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.953 3.047 12 H -0.287 1.287 13 H -0.269 1.269 14 H -0.269 1.269 15 C -0.145 4.145 16 C 0.036 3.964 17 O -0.411 6.411 18 C 0.045 3.955 19 H 0.074 0.926 20 H 0.059 0.941 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.029 0.971 25 H 0.060 0.940 26 H -0.016 1.016 27 H 0.000 1.000 28 H 0.260 0.740 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.985 3.117 0.802 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 C -0.196 4.196 4 C -0.082 4.082 5 H 0.072 0.928 6 C -0.003 4.003 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.196 4.196 10 N -0.575 5.575 11 Si 0.778 3.222 12 H -0.212 1.212 13 H -0.194 1.194 14 H -0.194 1.194 15 C -0.163 4.163 16 C -0.040 4.040 17 O -0.330 6.330 18 C -0.030 4.030 19 H 0.093 0.907 20 H 0.078 0.922 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.002 0.998 27 H 0.018 0.982 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.939 3.198 1.054 11.445 hybrid contribution 1.109 -0.674 -0.795 1.522 sum -9.829 2.524 0.259 10.151 Atomic orbital electron populations 1.22127 0.94072 1.01927 1.02456 1.20965 0.95895 0.95935 0.97448 1.21809 0.99975 0.96155 1.01651 1.21147 0.96441 0.97057 0.93530 0.92789 1.19011 0.91645 0.95256 0.94430 1.21601 0.91845 1.27509 1.15359 0.92467 1.25857 0.96850 0.97610 0.99326 1.70087 1.00193 1.45068 1.42117 0.85683 0.76872 0.79597 0.80012 1.21235 1.19423 1.19365 1.24321 0.96988 1.00040 0.94968 1.24062 0.86733 0.97741 0.95506 1.89612 1.37982 1.78492 1.26952 1.24404 0.95608 1.02762 0.80271 0.90734 0.92237 0.92731 0.93055 0.91925 0.95188 0.92107 0.99757 0.98170 0.93100 0.88851 0.90102 0.89441 0.87477 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 7.76 71.98 0.56 -3.24 16 2 C -0.08 -2.89 2.59 -10.79 -0.03 -2.91 16 3 C -0.14 -4.56 8.54 71.98 0.61 -3.94 16 4 C -0.06 -2.42 1.40 -10.79 -0.02 -2.43 16 5 H 0.05 2.09 8.04 -2.38 -0.02 2.07 16 6 C 0.03 1.69 4.31 29.85 0.13 1.82 16 7 C -0.52 -28.96 8.21 25.60 0.21 -28.75 16 8 H 0.06 3.05 7.30 -2.91 -0.02 3.03 16 9 C 0.00 0.05 5.46 84.65 0.46 0.51 16 10 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 11 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 12 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 15 C -0.14 -4.72 2.46 -10.10 -0.02 -4.74 16 16 C 0.04 1.17 8.57 72.30 0.62 1.79 16 17 O -0.41 -13.24 12.46 -148.98 -1.86 -15.09 16 18 C 0.05 1.21 6.23 72.29 0.45 1.66 16 19 H 0.07 1.62 4.85 -2.39 -0.01 1.61 16 20 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 21 H 0.05 1.34 7.83 -2.39 -0.02 1.33 16 22 H 0.05 2.06 6.91 -2.39 -0.02 2.04 16 23 H 0.06 1.82 6.20 -2.38 -0.01 1.81 16 24 H 0.03 1.17 6.73 -2.39 -0.02 1.16 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H -0.02 -0.87 7.95 -2.38 -0.02 -0.89 16 27 H 0.00 0.00 6.50 -2.39 -0.02 -0.02 16 28 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 29 H 0.09 3.12 6.77 -2.38 -0.02 3.10 16 30 H 0.08 2.59 8.05 -2.39 -0.02 2.57 16 31 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.11 2.35 7.41 -2.39 -0.02 2.34 16 33 H 0.09 2.27 6.81 -2.39 -0.02 2.26 16 Total: -1.00 -62.48 256.20 4.50 -57.98 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.07 Total: 7.36 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 2.98 Total: -40.24 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.28 Total: -56.18 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -1.86 Total: -15.09 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -62.48 4.50 -57.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416754.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.682 kcal (2) G-P(sol) polarization free energy of solvation -62.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds