Wall clock time and date at job start Mon Mar 30 2020 02:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46708 * 2 1 4 4 C 1.52994 * 109.47221 * 119.99774 * 2 1 3 5 5 H 1.08994 * 109.47546 * 296.41221 * 4 2 1 6 6 C 1.52997 * 109.47145 * 56.41371 * 4 2 1 7 7 C 1.50706 * 109.47260 * 54.23447 * 6 4 2 8 8 H 1.08002 * 119.99692 * 354.89526 * 7 6 4 9 9 C 1.37876 * 120.00178 * 174.89100 * 7 6 4 10 10 N 1.31508 * 119.99902 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99844 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47285 * 89.99721 * 11 9 7 13 13 H 1.48500 * 109.47188 * 209.99634 * 11 9 7 14 14 H 1.48506 * 109.47242 * 329.99505 * 11 9 7 15 15 C 1.53007 * 109.46861 * 176.41176 * 4 2 1 16 16 H 1.08990 * 113.03711 * 50.33874 * 15 4 2 17 17 C 1.54040 * 113.86498 * 182.31517 * 15 4 2 18 18 C 1.54029 * 85.82344 * 136.72500 * 17 15 4 19 19 O 1.44175 * 113.86200 * 278.35381 * 15 4 2 20 20 H 1.08998 * 109.47281 * 294.19055 * 1 2 3 21 21 H 1.08993 * 109.47360 * 54.19647 * 1 2 3 22 22 H 1.09006 * 109.46686 * 174.19225 * 1 2 3 23 23 H 1.08997 * 109.46969 * 240.00479 * 2 1 3 24 24 H 1.09002 * 109.47647 * 300.00172 * 3 2 1 25 25 H 1.08997 * 109.47281 * 60.00027 * 3 2 1 26 26 H 1.08998 * 109.47037 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47335 * 174.23226 * 6 4 2 28 28 H 1.08992 * 109.47214 * 294.23485 * 6 4 2 29 29 H 0.97007 * 119.99863 * 180.02562 * 10 9 7 30 30 H 1.09004 * 113.81498 * 250.95461 * 17 15 4 31 31 H 1.09003 * 113.81434 * 22.37311 * 17 15 4 32 32 H 1.08999 * 113.86482 * 91.57208 * 18 17 15 33 33 H 1.09003 * 113.86324 * 223.27291 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7302 -0.1716 2.1380 6 6 1.4577 -2.1352 1.2952 7 6 1.7666 -2.8480 0.0038 8 1 2.2498 -2.3176 -0.8035 9 6 1.4326 -4.1772 -0.1470 10 7 1.7017 -4.7990 -1.2742 11 14 0.5964 -5.0943 1.2491 12 1 -0.8768 -4.9653 1.1138 13 1 0.9747 -6.5293 1.1953 14 1 1.0266 -4.5173 2.5481 15 6 3.5674 -0.7998 1.2048 16 1 4.0383 0.1622 1.0028 17 6 4.1872 -1.5597 2.3928 18 6 5.1017 -2.2231 1.3458 19 8 4.0725 -1.8786 0.3926 20 1 -0.3634 0.4211 0.9374 21 1 -0.3634 0.6011 -0.8334 22 1 -0.3633 -1.0225 -0.1040 23 1 1.8933 -0.5137 -0.8900 24 1 1.6766 1.9565 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.8996 -2.6833 2.1274 28 1 0.3776 -2.0792 1.4298 29 1 1.4663 -5.7340 -1.3804 30 1 4.7171 -0.9185 3.0972 31 1 3.4994 -2.2507 2.8802 32 1 6.0426 -1.6967 1.1855 33 1 5.2305 -3.2959 1.4893 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260427224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:49 Heat of formation + Delta-G solvation = -24.473205 kcal Electronic energy + Delta-G solvation = -13695.898066 eV Core-core repulsion = 11529.768771 eV Total energy + Delta-G solvation = -2166.129296 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.73730 -36.08321 -32.40034 -30.22396 -28.70248 -27.23516 -25.80746 -23.38043 -21.50175 -19.79476 -18.39869 -16.59933 -15.74830 -15.04687 -14.71357 -14.06405 -13.77324 -13.49751 -12.48688 -12.24263 -12.03848 -11.80007 -11.61654 -11.38788 -11.20133 -10.95286 -10.56327 -10.26127 -10.07881 -9.95835 -9.62683 -9.31982 -9.20835 -8.88712 -8.44233 -8.25495 -5.78772 -3.68801 3.39566 3.47709 3.49280 4.51413 4.63383 4.97438 5.41400 5.50071 5.62594 5.68053 5.70505 5.73282 5.92194 6.10033 6.12088 6.19832 6.32624 6.40032 6.45437 6.56204 6.58603 6.67346 6.87278 6.97590 7.08662 7.20684 7.37809 7.40054 7.49461 8.02468 8.82635 9.35976 9.83939 11.35295 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.028503 B = 0.016325 C = 0.012724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.119153 B = 1714.799083 C = 2199.989828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C -0.149 4.149 4 C -0.067 4.067 5 H 0.055 0.945 6 C -0.012 4.012 7 C -0.467 4.467 8 H 0.085 0.915 9 C 0.059 3.941 10 N -0.910 5.910 11 Si 0.865 3.135 12 H -0.282 1.282 13 H -0.292 1.292 14 H -0.270 1.270 15 C 0.069 3.931 16 H 0.072 0.928 17 C -0.183 4.183 18 C 0.022 3.978 19 O -0.319 6.319 20 H 0.038 0.962 21 H 0.039 0.961 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.015 0.985 28 H 0.011 0.989 29 H 0.256 0.744 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.569 8.905 6.447 11.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C -0.206 4.206 4 C -0.086 4.086 5 H 0.073 0.927 6 C -0.049 4.049 7 C -0.505 4.505 8 H 0.103 0.897 9 C -0.139 4.139 10 N -0.552 5.552 11 Si 0.694 3.306 12 H -0.208 1.208 13 H -0.219 1.219 14 H -0.195 1.195 15 C 0.011 3.989 16 H 0.090 0.910 17 C -0.220 4.220 18 C -0.056 4.056 19 O -0.236 6.236 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.090 0.910 23 H 0.105 0.895 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.470 8.627 6.108 10.855 hybrid contribution -0.332 -0.636 0.956 1.196 sum 2.137 7.991 7.064 10.878 Atomic orbital electron populations 1.21784 0.95940 1.02571 0.99413 1.21032 0.95437 0.93690 1.00034 1.21963 1.00542 0.97592 1.00493 1.21141 0.92372 0.98728 0.96331 0.92708 1.19717 0.95099 0.91658 0.98471 1.21095 1.35614 0.94936 0.98837 0.89672 1.24961 0.96332 0.97644 0.94948 1.69911 1.49556 1.10682 1.25025 0.87025 0.80141 0.79227 0.84232 1.20796 1.21891 1.19496 1.23337 0.95676 0.91016 0.88884 0.91030 1.24736 0.99148 0.99978 0.98141 1.23648 0.92070 1.00580 0.89271 1.90317 1.44943 1.47245 1.41143 0.94277 0.94179 0.91010 0.89460 0.93527 0.93688 0.93208 0.96692 0.97087 0.93383 0.92813 0.88615 0.92066 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.55 37.16 0.32 -2.19 16 2 C -0.08 -1.57 2.09 -90.62 -0.19 -1.76 16 3 C -0.15 -2.26 8.97 37.16 0.33 -1.93 16 4 C -0.07 -1.31 1.97 -90.62 -0.18 -1.49 16 5 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 6 C -0.01 -0.29 3.08 -27.88 -0.09 -0.38 16 7 C -0.47 -12.97 6.82 -34.44 -0.23 -13.20 16 8 H 0.09 2.60 5.43 -52.49 -0.29 2.31 16 9 C 0.06 1.75 5.47 -17.82 -0.10 1.65 16 10 N -0.91 -28.65 13.96 55.43 0.77 -27.88 16 11 Si 0.87 22.13 27.57 -169.99 -4.69 17.45 16 12 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 14 H -0.27 -6.63 6.40 56.52 0.36 -6.27 16 15 C 0.07 1.29 4.06 -26.27 -0.11 1.19 16 16 H 0.07 1.19 6.38 -51.93 -0.33 0.86 16 17 C -0.18 -3.10 7.70 -25.65 -0.20 -3.30 16 18 C 0.02 0.39 9.21 37.61 0.35 0.74 16 19 O -0.32 -7.22 8.89 -35.23 -0.31 -7.53 16 20 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 1.47 6.65 -51.93 -0.35 1.13 16 23 H 0.09 1.94 6.34 -51.93 -0.33 1.61 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.73 6.40 -51.93 -0.33 0.40 16 27 H 0.01 0.36 4.89 -51.93 -0.25 0.11 16 28 H 0.01 0.26 6.52 -51.93 -0.34 -0.08 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.10 1.76 6.26 -51.93 -0.32 1.43 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 251.29 15.07 3.79 3.79 Total: -1.00 -30.98 251.29 -5.63 -36.61 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -5.10 Total: -1.77 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -0.09 Total: -20.67 kcal Atomic # 7 Polarization: -28.65 SS G_CDS: 0.77 Total: -27.88 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.31 Total: -7.53 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.69 Total: 17.45 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.98 -5.63 -36.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.141 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds