Wall clock time and date at job start Mon Mar 30 2020 02:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46708 * 2 1 4 4 C 1.52994 * 109.47221 * 119.99774 * 2 1 3 5 5 H 1.08994 * 109.47546 * 296.41221 * 4 2 1 6 6 C 1.52997 * 109.47145 * 56.41371 * 4 2 1 7 7 C 1.50706 * 109.47260 * 54.23447 * 6 4 2 8 8 H 1.08002 * 119.99692 * 354.89526 * 7 6 4 9 9 C 1.37876 * 120.00178 * 174.89100 * 7 6 4 10 10 N 1.31508 * 119.99902 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99844 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47285 * 89.99721 * 11 9 7 13 13 H 1.48500 * 109.47188 * 209.99634 * 11 9 7 14 14 H 1.48506 * 109.47242 * 329.99505 * 11 9 7 15 15 C 1.53007 * 109.46861 * 176.41176 * 4 2 1 16 16 H 1.08990 * 113.03711 * 50.33874 * 15 4 2 17 17 C 1.54040 * 113.86498 * 182.31517 * 15 4 2 18 18 C 1.54029 * 85.82344 * 136.72500 * 17 15 4 19 19 O 1.44175 * 113.86200 * 278.35381 * 15 4 2 20 20 H 1.08998 * 109.47281 * 294.19055 * 1 2 3 21 21 H 1.08993 * 109.47360 * 54.19647 * 1 2 3 22 22 H 1.09006 * 109.46686 * 174.19225 * 1 2 3 23 23 H 1.08997 * 109.46969 * 240.00479 * 2 1 3 24 24 H 1.09002 * 109.47647 * 300.00172 * 3 2 1 25 25 H 1.08997 * 109.47281 * 60.00027 * 3 2 1 26 26 H 1.08998 * 109.47037 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47335 * 174.23226 * 6 4 2 28 28 H 1.08992 * 109.47214 * 294.23485 * 6 4 2 29 29 H 0.97007 * 119.99863 * 180.02562 * 10 9 7 30 30 H 1.09004 * 113.81498 * 250.95461 * 17 15 4 31 31 H 1.09003 * 113.81434 * 22.37311 * 17 15 4 32 32 H 1.08999 * 113.86482 * 91.57208 * 18 17 15 33 33 H 1.09003 * 113.86324 * 223.27291 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7302 -0.1716 2.1380 6 6 1.4577 -2.1352 1.2952 7 6 1.7666 -2.8480 0.0038 8 1 2.2498 -2.3176 -0.8035 9 6 1.4326 -4.1772 -0.1470 10 7 1.7017 -4.7990 -1.2742 11 14 0.5964 -5.0943 1.2491 12 1 -0.8768 -4.9653 1.1138 13 1 0.9747 -6.5293 1.1953 14 1 1.0266 -4.5173 2.5481 15 6 3.5674 -0.7998 1.2048 16 1 4.0383 0.1622 1.0028 17 6 4.1872 -1.5597 2.3928 18 6 5.1017 -2.2231 1.3458 19 8 4.0725 -1.8786 0.3926 20 1 -0.3634 0.4211 0.9374 21 1 -0.3634 0.6011 -0.8334 22 1 -0.3633 -1.0225 -0.1040 23 1 1.8933 -0.5137 -0.8900 24 1 1.6766 1.9565 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.8996 -2.6833 2.1274 28 1 0.3776 -2.0792 1.4298 29 1 1.4663 -5.7340 -1.3804 30 1 4.7171 -0.9185 3.0972 31 1 3.4994 -2.2507 2.8802 32 1 6.0426 -1.6967 1.1855 33 1 5.2305 -3.2959 1.4893 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260427224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:49 Heat of formation + Delta-G solvation = -44.591895 kcal Electronic energy + Delta-G solvation = -13696.770478 eV Core-core repulsion = 11529.768771 eV Total energy + Delta-G solvation = -2167.001707 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.24166 -37.63225 -34.50830 -31.95276 -30.27766 -28.73180 -27.38593 -25.05118 -23.22239 -21.21457 -20.08653 -18.58385 -17.22625 -16.62563 -16.32068 -16.01896 -15.37155 -15.00948 -14.37852 -13.86677 -13.67772 -13.28136 -13.00340 -12.91609 -12.84877 -12.51422 -12.32310 -11.89896 -11.75692 -11.60067 -11.39296 -10.97072 -10.76230 -10.73213 -10.51210 -10.03232 -8.04495 -5.96936 1.35758 1.37252 1.46653 2.47331 3.08243 3.33087 3.58971 4.00625 4.22679 4.25812 4.31234 4.39790 4.57936 4.73704 4.79050 4.88689 4.92377 4.98138 5.02950 5.14415 5.17868 5.25992 5.31103 5.51200 5.52303 5.68938 5.70404 5.73531 5.81884 5.99636 6.61957 7.09783 7.58152 9.13161 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.028503 B = 0.016325 C = 0.012724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.119153 B = 1714.799083 C = 2199.989828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.069 4.069 5 H 0.088 0.912 6 C -0.011 4.011 7 C -0.444 4.444 8 H 0.046 0.954 9 C -0.011 4.011 10 N -0.966 5.966 11 Si 0.929 3.071 12 H -0.275 1.275 13 H -0.297 1.297 14 H -0.249 1.249 15 C 0.063 3.937 16 H 0.099 0.901 17 C -0.168 4.168 18 C 0.015 3.985 19 O -0.377 6.377 20 H 0.064 0.936 21 H 0.053 0.947 22 H 0.035 0.965 23 H 0.038 0.962 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.015 0.985 28 H 0.014 0.986 29 H 0.254 0.746 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 10.939 8.969 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.196 4.196 4 C -0.087 4.087 5 H 0.106 0.894 6 C -0.048 4.048 7 C -0.482 4.482 8 H 0.065 0.935 9 C -0.203 4.203 10 N -0.610 5.610 11 Si 0.755 3.245 12 H -0.201 1.201 13 H -0.223 1.223 14 H -0.173 1.173 15 C 0.005 3.995 16 H 0.116 0.884 17 C -0.205 4.205 18 C -0.061 4.061 19 O -0.296 6.296 20 H 0.083 0.917 21 H 0.072 0.928 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.482 10.687 8.659 13.976 hybrid contribution -0.286 -1.192 0.105 1.231 sum 2.195 9.494 8.764 13.106 Atomic orbital electron populations 1.21740 0.95460 1.00786 1.01420 1.20960 0.95888 0.95747 0.97677 1.21860 1.00808 0.94803 1.02164 1.21184 0.93169 0.96399 0.97960 0.89373 1.19674 0.95424 0.94023 0.95715 1.21281 1.32816 0.94574 0.99534 0.93549 1.25811 0.97963 0.99068 0.97482 1.70091 1.52393 1.10920 1.27645 0.85983 0.79193 0.77510 0.81824 1.20072 1.22340 1.17280 1.23595 0.95208 0.91497 0.89161 0.88351 1.24542 0.98389 0.99604 0.97965 1.23892 0.92845 1.00584 0.88824 1.90264 1.46854 1.49011 1.43448 0.91692 0.92782 0.94607 0.94306 0.92693 0.91179 0.92739 0.96681 0.96797 0.93763 0.88696 0.90244 0.88861 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 8.55 71.98 0.62 -4.10 16 2 C -0.08 -3.06 2.09 -10.79 -0.02 -3.08 16 3 C -0.14 -3.77 8.97 71.98 0.65 -3.13 16 4 C -0.07 -2.54 1.97 -10.79 -0.02 -2.56 16 5 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 6 C -0.01 -0.52 3.08 29.85 0.09 -0.43 16 7 C -0.44 -25.33 6.82 25.60 0.17 -25.16 16 8 H 0.05 2.99 5.43 -2.91 -0.02 2.97 16 9 C -0.01 -0.64 5.47 84.66 0.46 -0.17 16 10 N -0.97 -63.50 13.96 21.45 0.30 -63.20 16 11 Si 0.93 46.24 27.57 68.60 1.89 48.13 16 12 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 14 H -0.25 -11.42 6.40 99.48 0.64 -10.78 16 15 C 0.06 2.21 4.06 30.89 0.13 2.34 16 16 H 0.10 2.93 6.38 -2.39 -0.02 2.91 16 17 C -0.17 -5.18 7.70 31.29 0.24 -4.94 16 18 C 0.02 0.54 9.21 72.27 0.67 1.20 16 19 O -0.38 -17.13 8.89 -148.98 -1.33 -18.46 16 20 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 21 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.03 1.46 6.65 -2.38 -0.02 1.44 16 23 H 0.04 1.78 6.34 -2.39 -0.02 1.76 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 26 H 0.05 1.42 6.40 -2.39 -0.02 1.40 16 27 H 0.02 0.70 4.89 -2.39 -0.01 0.69 16 28 H 0.01 0.63 6.52 -2.39 -0.02 0.62 16 29 H 0.25 15.85 8.31 -92.70 -0.77 15.08 16 30 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.08 2.71 6.26 -2.39 -0.01 2.70 16 32 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -70.06 251.29 4.85 -65.21 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.00 Total: 8.33 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 2.98 Total: -40.02 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 0.30 Total: -63.20 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -1.33 Total: -18.46 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.89 Total: 48.13 kcal Total: -70.06 4.85 -65.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.623 kcal (2) G-P(sol) polarization free energy of solvation -70.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds