Wall clock time and date at job start Mon Mar 30 2020 02:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47054 * 2 1 4 4 C 1.52997 * 109.47190 * 239.99914 * 2 1 3 5 5 H 1.08999 * 109.47370 * 305.43480 * 4 2 1 6 6 C 1.53001 * 109.47056 * 185.43217 * 4 2 1 7 7 C 1.50697 * 109.46944 * 65.31679 * 6 4 2 8 8 H 1.07999 * 120.00048 * 355.08829 * 7 6 4 9 9 C 1.37875 * 119.99852 * 175.08567 * 7 6 4 10 10 N 1.31511 * 120.00358 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99796 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47353 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46813 * 120.00140 * 11 9 7 14 14 H 1.48501 * 109.47190 * 239.99917 * 11 9 7 15 15 C 1.53005 * 109.46723 * 65.43464 * 4 2 1 16 16 H 1.09000 * 112.68587 * 313.99086 * 15 4 2 17 17 C 1.53369 * 113.39152 * 183.41672 * 15 4 2 18 18 C 1.53366 * 81.26241 * 218.62011 * 17 15 4 19 19 O 1.43345 * 88.44522 * 26.48382 * 18 17 15 20 20 H 1.09002 * 109.46869 * 174.80183 * 1 2 3 21 21 H 1.09000 * 109.46957 * 54.80119 * 1 2 3 22 22 H 1.09004 * 109.46794 * 294.79884 * 1 2 3 23 23 H 1.09002 * 109.47074 * 120.00094 * 2 1 3 24 24 H 1.09004 * 109.46474 * 59.99853 * 3 2 1 25 25 H 1.08999 * 109.46735 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.46717 * 300.00544 * 3 2 1 27 27 H 1.09004 * 109.46847 * 185.31562 * 6 4 2 28 28 H 1.09001 * 109.47195 * 305.31539 * 6 4 2 29 29 H 0.97001 * 120.00572 * 180.02562 * 10 9 7 30 30 H 1.09009 * 114.56590 * 331.71168 * 17 15 4 31 31 H 1.08993 * 114.56604 * 105.52148 * 17 15 4 32 32 H 1.08996 * 113.38725 * 271.58765 * 18 17 15 33 33 H 1.08998 * 113.43154 * 141.39521 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.5994 -1.7170 -1.2992 6 6 3.5639 -0.8406 -1.1828 7 6 3.9481 -1.7328 -0.0307 8 1 3.1882 -2.1067 0.6395 9 6 5.2698 -2.0718 0.1678 10 7 6.1952 -1.6161 -0.6480 11 14 5.7461 -3.1772 1.5963 12 1 4.5287 -3.5515 2.3599 13 1 6.4001 -4.4045 1.0757 14 1 6.6880 -2.4548 2.4885 15 6 1.6446 0.0746 -2.4947 16 1 0.6048 0.4008 -2.4726 17 6 2.0404 -0.6125 -3.8075 18 6 2.3495 0.8373 -4.2009 19 8 2.5644 1.1268 -2.8135 20 1 -0.3633 -1.0235 -0.0931 21 1 -0.3633 0.5924 -0.8398 22 1 -0.3633 0.4311 0.9330 23 1 1.8934 -0.5139 0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 3.9357 -1.2688 -2.1137 28 1 3.9998 0.1479 -1.0379 29 1 7.1250 -1.8548 -0.5086 30 1 2.9153 -1.2587 -3.7349 31 1 1.2102 -1.0626 -4.3516 32 1 1.4936 1.3623 -4.6250 33 1 3.2485 0.9392 -4.8087 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260427226.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:51 Heat of formation + Delta-G solvation = -34.684326 kcal Electronic energy + Delta-G solvation = -13465.730039 eV Core-core repulsion = 11299.157956 eV Total energy + Delta-G solvation = -2166.572083 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.37413 -36.05525 -32.66168 -30.10877 -28.94958 -26.55158 -26.20371 -23.45446 -21.69797 -20.29520 -18.18458 -16.41612 -15.89125 -15.22672 -14.76963 -14.23361 -13.90814 -13.34217 -12.89473 -12.26809 -12.09876 -11.81479 -11.55198 -11.09610 -11.03958 -10.89631 -10.59061 -10.47683 -10.36106 -9.98220 -9.78498 -9.38136 -9.30970 -8.79615 -8.75130 -8.23083 -5.90746 -3.91508 3.34816 3.42560 3.46128 4.50423 4.52378 4.76378 5.33552 5.44419 5.53281 5.65215 5.67503 5.75285 5.81201 5.99953 6.09619 6.19183 6.33063 6.42835 6.45445 6.52278 6.58430 6.67622 6.84556 7.02101 7.10091 7.23579 7.37048 7.83890 8.00761 8.17958 8.54236 9.16363 9.71018 11.20382 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035312 B = 0.011812 C = 0.009967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.733201 B = 2369.824600 C = 2808.720129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.079 4.079 5 H 0.067 0.933 6 C 0.034 3.966 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.056 3.944 10 N -0.895 5.895 11 Si 0.885 3.115 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.065 3.935 16 H 0.074 0.926 17 C -0.188 4.188 18 C 0.023 3.977 19 O -0.350 6.350 20 H 0.048 0.952 21 H 0.045 0.955 22 H 0.044 0.956 23 H 0.079 0.921 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.017 0.983 28 H 0.027 0.973 29 H 0.258 0.742 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.631 3.058 -3.832 10.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.196 4.196 4 C -0.097 4.097 5 H 0.085 0.915 6 C -0.003 4.003 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.534 5.534 11 Si 0.714 3.286 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.212 1.212 15 C 0.007 3.993 16 H 0.092 0.908 17 C -0.225 4.225 18 C -0.055 4.055 19 O -0.268 6.268 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.097 0.903 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.036 0.964 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.283 3.253 -3.700 10.509 hybrid contribution 0.287 -0.723 0.650 1.014 sum -8.996 2.530 -3.050 9.829 Atomic orbital electron populations 1.21949 0.97385 1.00718 1.00421 1.21057 0.93021 0.96632 0.99717 1.21811 1.02556 0.95664 0.99572 1.21445 1.01259 0.96186 0.90858 0.91492 1.19081 0.87261 0.97363 0.96593 1.21346 0.92336 1.29364 1.12165 0.92735 1.24994 0.96837 0.96355 0.96244 1.69986 1.00710 1.45359 1.37394 0.86645 0.78491 0.80619 0.82891 1.19830 1.21199 1.21160 1.23366 0.92843 0.87079 0.96006 0.90800 1.24455 1.03003 0.97616 0.97435 1.23412 1.00631 0.94549 0.86900 1.90005 1.62146 1.56641 1.18055 0.93298 0.93554 0.93666 0.90272 0.94753 0.91531 0.93065 0.96435 0.95518 0.93269 0.87515 0.91543 0.91625 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.89 37.16 0.33 -1.94 16 2 C -0.09 -1.65 2.58 -90.62 -0.23 -1.88 16 3 C -0.14 -2.65 8.20 37.16 0.30 -2.35 16 4 C -0.08 -1.63 1.72 -90.62 -0.16 -1.78 16 5 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 6 C 0.03 0.87 3.69 -27.88 -0.10 0.77 16 7 C -0.51 -14.45 8.42 -34.44 -0.29 -14.74 16 8 H 0.05 1.50 6.92 -52.49 -0.36 1.13 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 11 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 C 0.06 1.15 2.88 -39.28 -0.11 1.04 16 16 H 0.07 1.17 6.42 -51.93 -0.33 0.84 16 17 C -0.19 -3.02 8.00 -26.35 -0.21 -3.24 16 18 C 0.02 0.35 8.74 24.60 0.21 0.56 16 19 O -0.35 -6.88 9.73 -35.23 -0.34 -7.22 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.05 0.66 6.63 -51.93 -0.34 0.32 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.08 1.68 6.74 -51.93 -0.35 1.33 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 1.46 6.47 -51.93 -0.34 1.13 16 26 H 0.05 0.94 6.23 -51.93 -0.32 0.62 16 27 H 0.02 0.48 6.47 -51.93 -0.34 0.15 16 28 H 0.03 0.76 5.94 -51.93 -0.31 0.45 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.11 1.96 6.57 -51.92 -0.34 1.62 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 256.14 15.07 3.86 3.86 Total: -1.00 -30.35 256.14 -6.25 -36.60 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -5.13 Total: -1.58 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -0.35 Total: -22.03 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.74 Total: -26.52 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.34 Total: -7.22 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.35 -6.25 -36.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427226.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.920 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds