Wall clock time and date at job start Mon Mar 30 2020 02:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47054 * 2 1 4 4 C 1.52997 * 109.47190 * 239.99914 * 2 1 3 5 5 H 1.08999 * 109.47370 * 305.43480 * 4 2 1 6 6 C 1.53001 * 109.47056 * 185.43217 * 4 2 1 7 7 C 1.50697 * 109.46944 * 65.31679 * 6 4 2 8 8 H 1.07999 * 120.00048 * 355.08829 * 7 6 4 9 9 C 1.37875 * 119.99852 * 175.08567 * 7 6 4 10 10 N 1.31511 * 120.00358 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99796 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47353 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46813 * 120.00140 * 11 9 7 14 14 H 1.48501 * 109.47190 * 239.99917 * 11 9 7 15 15 C 1.53005 * 109.46723 * 65.43464 * 4 2 1 16 16 H 1.09000 * 112.68587 * 313.99086 * 15 4 2 17 17 C 1.53369 * 113.39152 * 183.41672 * 15 4 2 18 18 C 1.53366 * 81.26241 * 218.62011 * 17 15 4 19 19 O 1.43345 * 88.44522 * 26.48382 * 18 17 15 20 20 H 1.09002 * 109.46869 * 174.80183 * 1 2 3 21 21 H 1.09000 * 109.46957 * 54.80119 * 1 2 3 22 22 H 1.09004 * 109.46794 * 294.79884 * 1 2 3 23 23 H 1.09002 * 109.47074 * 120.00094 * 2 1 3 24 24 H 1.09004 * 109.46474 * 59.99853 * 3 2 1 25 25 H 1.08999 * 109.46735 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.46717 * 300.00544 * 3 2 1 27 27 H 1.09004 * 109.46847 * 185.31562 * 6 4 2 28 28 H 1.09001 * 109.47195 * 305.31539 * 6 4 2 29 29 H 0.97001 * 120.00572 * 180.02562 * 10 9 7 30 30 H 1.09009 * 114.56590 * 331.71168 * 17 15 4 31 31 H 1.08993 * 114.56604 * 105.52148 * 17 15 4 32 32 H 1.08996 * 113.38725 * 271.58765 * 18 17 15 33 33 H 1.08998 * 113.43154 * 141.39521 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.5994 -1.7170 -1.2992 6 6 3.5639 -0.8406 -1.1828 7 6 3.9481 -1.7328 -0.0307 8 1 3.1882 -2.1067 0.6395 9 6 5.2698 -2.0718 0.1678 10 7 6.1952 -1.6161 -0.6480 11 14 5.7461 -3.1772 1.5963 12 1 4.5287 -3.5515 2.3599 13 1 6.4001 -4.4045 1.0757 14 1 6.6880 -2.4548 2.4885 15 6 1.6446 0.0746 -2.4947 16 1 0.6048 0.4008 -2.4726 17 6 2.0404 -0.6125 -3.8075 18 6 2.3495 0.8373 -4.2009 19 8 2.5644 1.1268 -2.8135 20 1 -0.3633 -1.0235 -0.0931 21 1 -0.3633 0.5924 -0.8398 22 1 -0.3633 0.4311 0.9330 23 1 1.8934 -0.5139 0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 3.9357 -1.2688 -2.1137 28 1 3.9998 0.1479 -1.0379 29 1 7.1250 -1.8548 -0.5086 30 1 2.9153 -1.2587 -3.7349 31 1 1.2102 -1.0626 -4.3516 32 1 1.4936 1.3623 -4.6250 33 1 3.2485 0.9392 -4.8087 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260427226.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:51 Heat of formation + Delta-G solvation = -53.541753 kcal Electronic energy + Delta-G solvation = -13466.547758 eV Core-core repulsion = 11299.157956 eV Total energy + Delta-G solvation = -2167.389802 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.77721 -37.64971 -34.78855 -31.78010 -30.49784 -28.14097 -27.78397 -25.18624 -23.45857 -21.65048 -19.79602 -18.42876 -17.30825 -16.82214 -16.50727 -15.99299 -15.36726 -14.93477 -14.49871 -14.03327 -13.60366 -13.45217 -13.03287 -12.88567 -12.67040 -12.52143 -12.42021 -12.17707 -11.72246 -11.65088 -11.48915 -11.15475 -10.96906 -10.64015 -10.43277 -10.31867 -8.14200 -6.22767 1.37927 1.38532 1.51196 2.42422 3.17115 3.19231 3.46489 4.00485 4.19651 4.24996 4.30716 4.35676 4.52638 4.67307 4.81562 4.89748 4.92468 4.94980 5.02093 5.13257 5.18479 5.28743 5.36453 5.42236 5.55200 5.58432 5.67178 5.78202 5.91095 6.04518 6.35149 6.96063 7.44624 8.97796 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035312 B = 0.011812 C = 0.009967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.733201 B = 2369.824600 C = 2808.720129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 C -0.130 4.130 4 C -0.077 4.077 5 H 0.068 0.932 6 C 0.047 3.953 7 C -0.527 4.527 8 H 0.059 0.941 9 C -0.003 4.003 10 N -0.936 5.936 11 Si 0.957 3.043 12 H -0.261 1.261 13 H -0.279 1.279 14 H -0.282 1.282 15 C 0.065 3.935 16 H 0.110 0.890 17 C -0.185 4.185 18 C 0.024 3.976 19 O -0.390 6.390 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.023 0.977 26 H 0.060 0.940 27 H -0.013 1.013 28 H -0.009 1.009 29 H 0.259 0.741 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.923 2.919 -3.657 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 C -0.187 4.187 4 C -0.095 4.095 5 H 0.086 0.914 6 C 0.010 3.990 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.200 4.200 10 N -0.577 5.577 11 Si 0.782 3.218 12 H -0.185 1.185 13 H -0.205 1.205 14 H -0.208 1.208 15 C 0.008 3.992 16 H 0.127 0.873 17 C -0.222 4.222 18 C -0.052 4.052 19 O -0.309 6.309 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.005 0.995 28 H 0.010 0.990 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.592 3.110 -3.527 12.509 hybrid contribution 1.025 -0.650 0.562 1.338 sum -10.566 2.461 -2.965 11.247 Atomic orbital electron populations 1.21843 0.93558 1.01939 1.02124 1.21020 0.96165 0.95787 0.97547 1.21708 0.99713 0.96280 1.01041 1.21327 0.97157 0.97365 0.93694 0.91388 1.18844 0.91246 0.94552 0.94385 1.21768 0.92693 1.29323 1.12740 0.92280 1.25925 0.96923 0.98014 0.99125 1.70134 1.01106 1.46983 1.39482 0.85523 0.78442 0.78516 0.79335 1.18472 1.20502 1.20831 1.23477 0.94018 0.86790 0.94878 0.87300 1.24328 1.02874 0.97839 0.97172 1.23664 1.02228 0.94155 0.85189 1.89988 1.63125 1.57143 1.20664 0.92366 0.91734 0.92077 0.93065 0.92597 0.95810 0.92139 0.99498 0.99050 0.93174 0.90988 0.87818 0.87653 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 8.89 71.98 0.64 -3.13 16 2 C -0.09 -3.25 2.58 -10.79 -0.03 -3.28 16 3 C -0.13 -4.93 8.20 71.98 0.59 -4.34 16 4 C -0.08 -3.17 1.72 -10.79 -0.02 -3.19 16 5 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 6 C 0.05 2.52 3.69 29.85 0.11 2.63 16 7 C -0.53 -30.52 8.42 25.60 0.22 -30.30 16 8 H 0.06 3.29 6.92 -2.91 -0.02 3.27 16 9 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 10 N -0.94 -59.07 13.29 21.45 0.28 -58.79 16 11 Si 0.96 45.63 29.54 68.60 2.03 47.66 16 12 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 15 C 0.07 2.23 2.88 22.47 0.06 2.29 16 16 H 0.11 2.99 6.42 -2.39 -0.02 2.97 16 17 C -0.18 -5.71 8.00 30.84 0.25 -5.46 16 18 C 0.02 0.70 8.74 63.85 0.56 1.26 16 19 O -0.39 -15.19 9.73 -148.98 -1.45 -16.64 16 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.06 1.55 6.63 -2.39 -0.02 1.53 16 22 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 23 H 0.05 2.18 6.74 -2.39 -0.02 2.16 16 24 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.02 1.07 6.47 -2.39 -0.02 1.05 16 26 H 0.06 2.15 6.23 -2.39 -0.01 2.14 16 27 H -0.01 -0.79 6.47 -2.39 -0.02 -0.80 16 28 H -0.01 -0.54 5.94 -2.39 -0.01 -0.55 16 29 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.07 2.73 6.57 -2.38 -0.02 2.71 16 31 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -68.22 256.14 4.77 -63.44 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.07 Total: 7.56 kcal Atomic # 6 Polarization: -46.07 SS G_CDS: 2.84 Total: -43.23 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.28 Total: -58.79 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -1.45 Total: -16.64 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -68.22 4.77 -63.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427226.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.900 kcal (2) G-P(sol) polarization free energy of solvation -68.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds