Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47263 * 2 1 4 4 C 1.53002 * 109.47329 * 120.00097 * 2 1 3 5 5 H 1.08996 * 109.47043 * 182.77970 * 4 2 1 6 6 C 1.53003 * 109.46837 * 62.78333 * 4 2 1 7 7 C 1.50709 * 109.46977 * 65.62555 * 6 4 2 8 8 H 1.07997 * 119.99586 * 5.11239 * 7 6 4 9 9 C 1.37875 * 119.99747 * 185.11385 * 7 6 4 10 10 N 1.31510 * 120.00327 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99785 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47243 * 90.00100 * 11 9 7 13 13 H 1.48504 * 109.47376 * 209.99802 * 11 9 7 14 14 H 1.48499 * 109.47525 * 330.00084 * 11 9 7 15 15 C 1.53000 * 109.47218 * 302.78796 * 4 2 1 16 16 H 1.09003 * 112.67809 * 51.00323 * 15 4 2 17 17 C 1.53358 * 113.39168 * 181.58058 * 15 4 2 18 18 C 1.53368 * 81.26312 * 141.38123 * 17 15 4 19 19 O 1.43349 * 88.44391 * 333.51464 * 18 17 15 20 20 H 1.09006 * 109.46865 * 300.00002 * 1 2 3 21 21 H 1.09001 * 109.47379 * 59.99609 * 1 2 3 22 22 H 1.08997 * 109.47377 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46865 * 239.99998 * 2 1 3 24 24 H 1.09005 * 109.47158 * 174.22337 * 3 2 1 25 25 H 1.09000 * 109.47423 * 294.22248 * 3 2 1 26 26 H 1.09001 * 109.47079 * 54.22538 * 3 2 1 27 27 H 1.08999 * 109.47375 * 185.62378 * 6 4 2 28 28 H 1.09004 * 109.47252 * 305.62612 * 6 4 2 29 29 H 0.97001 * 120.00614 * 179.97438 * 10 9 7 30 30 H 1.09005 * 114.56425 * 254.47392 * 17 15 4 31 31 H 1.08997 * 114.56900 * 28.28738 * 17 15 4 32 32 H 1.08996 * 113.39358 * 218.61428 * 18 17 15 33 33 H 1.09004 * 113.43029 * 88.41633 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1288 -0.6783 1.2744 6 6 1.5880 -2.1826 1.2146 7 6 2.2561 -2.8879 0.0625 8 1 2.9970 -2.3719 -0.5300 9 6 1.9214 -4.1919 -0.2350 10 7 1.0196 -4.8204 0.4869 11 14 2.7490 -5.0659 -1.6635 12 1 3.9744 -5.7522 -1.1810 13 1 1.8154 -6.0669 -2.2394 14 1 3.1154 -4.0737 -2.7058 15 6 1.4736 -0.0417 2.4975 16 1 0.3918 0.0847 2.4530 17 6 1.9606 -0.6721 3.8080 18 6 1.9831 0.8006 4.2354 19 8 2.1722 1.1565 2.8598 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1251 1.4442 0.1034 25 1 1.7636 1.9256 -0.9372 26 1 1.5947 1.9853 0.8338 27 1 1.8646 -2.6708 2.1491 28 1 0.5061 -2.2254 1.0887 29 1 0.7838 -5.7377 0.2774 30 1 1.2170 -1.2817 4.3214 31 1 2.9425 -1.1415 3.7476 32 1 2.8330 1.0544 4.8689 33 1 1.0347 1.1474 4.6458 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260427228.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = -37.470391 kcal Electronic energy + Delta-G solvation = -13363.521956 eV Core-core repulsion = 11196.829061 eV Total energy + Delta-G solvation = -2166.692896 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.39761 -36.18945 -32.70683 -30.37441 -28.73865 -26.62988 -26.21812 -23.51340 -21.59056 -20.42509 -18.31467 -16.45771 -15.96668 -15.25412 -14.76971 -14.36503 -13.94925 -13.46301 -12.73241 -12.23940 -12.16082 -11.99578 -11.47530 -11.20357 -11.04833 -10.82138 -10.64134 -10.55074 -10.37619 -10.06887 -9.75540 -9.47065 -9.36379 -8.97741 -8.81184 -8.31333 -5.98339 -3.98877 3.32848 3.39451 3.42922 4.36238 4.50605 4.74786 5.28490 5.37820 5.49850 5.63084 5.73589 5.78037 5.84109 6.02392 6.17092 6.22942 6.30368 6.33609 6.46025 6.49928 6.60587 6.72884 6.82760 6.94728 7.08864 7.17869 7.30228 7.71481 7.84844 8.02366 8.45586 9.06933 9.64247 11.12997 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040401 B = 0.010570 C = 0.009374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.883544 B = 2648.264347 C = 2986.341078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.143 4.143 4 C -0.075 4.075 5 H 0.063 0.937 6 C 0.028 3.972 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.057 3.943 10 N -0.896 5.896 11 Si 0.888 3.112 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.065 3.935 16 H 0.085 0.915 17 C -0.180 4.180 18 C 0.022 3.978 19 O -0.370 6.370 20 H 0.043 0.957 21 H 0.039 0.961 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.046 0.954 25 H 0.038 0.962 26 H 0.055 0.945 27 H 0.014 0.986 28 H 0.026 0.974 29 H 0.259 0.741 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 8.730 3.952 9.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.200 4.200 4 C -0.094 4.094 5 H 0.081 0.919 6 C -0.008 4.008 7 C -0.549 4.549 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.716 3.284 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.199 1.199 15 C 0.008 3.992 16 H 0.102 0.898 17 C -0.217 4.217 18 C -0.055 4.055 19 O -0.289 6.289 20 H 0.062 0.938 21 H 0.059 0.941 22 H 0.087 0.913 23 H 0.096 0.904 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.032 0.968 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.142 8.791 3.812 9.583 hybrid contribution 0.345 -0.714 -0.656 1.029 sum 0.203 8.077 3.156 8.674 Atomic orbital electron populations 1.21903 0.96344 1.02316 0.99680 1.20998 0.95195 0.94450 0.99481 1.21881 1.00676 0.97235 1.00191 1.21443 0.99507 0.97568 0.90837 0.91884 1.19129 0.97270 0.87544 0.96903 1.21197 1.22352 0.97202 1.14185 0.92669 1.24981 0.95234 0.97606 0.96550 1.69954 1.32106 1.11836 1.39695 0.86657 0.79280 0.79554 0.82898 1.20784 1.21323 1.19897 1.23513 0.96584 0.83104 0.96029 0.89783 1.24289 1.03383 0.96490 0.97551 1.23493 1.00817 0.94566 0.86651 1.89880 1.75596 1.44912 1.18510 0.93844 0.94145 0.91299 0.90378 0.93480 0.94329 0.92564 0.96783 0.95537 0.93108 0.90717 0.88473 0.90537 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.55 37.16 0.32 -2.33 16 2 C -0.08 -1.62 2.58 -90.62 -0.23 -1.85 16 3 C -0.14 -2.46 8.45 37.16 0.31 -2.15 16 4 C -0.07 -1.56 1.62 -90.62 -0.15 -1.70 16 5 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 6 C 0.03 0.71 4.19 -27.88 -0.12 0.59 16 7 C -0.51 -14.06 8.27 -34.44 -0.28 -14.35 16 8 H 0.06 1.50 7.31 -52.49 -0.38 1.12 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 11 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.06 1.16 2.77 -39.29 -0.11 1.06 16 16 H 0.08 1.47 6.16 -51.93 -0.32 1.15 16 17 C -0.18 -2.89 7.19 -26.36 -0.19 -3.08 16 18 C 0.02 0.31 8.74 24.60 0.21 0.53 16 19 O -0.37 -6.52 10.60 -35.23 -0.37 -6.89 16 20 H 0.04 0.73 6.22 -51.93 -0.32 0.40 16 21 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 1.40 6.38 -51.93 -0.33 1.07 16 23 H 0.08 1.67 7.03 -51.93 -0.37 1.31 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.97 6.45 -51.93 -0.33 0.63 16 27 H 0.01 0.37 7.30 -51.93 -0.38 -0.01 16 28 H 0.03 0.69 6.23 -51.93 -0.32 0.37 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 1.63 8.13 -51.93 -0.42 1.21 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 259.08 15.07 3.90 3.90 Total: -1.00 -29.02 259.08 -6.36 -35.38 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.28 Total: -1.47 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -0.33 Total: -21.78 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.74 Total: -25.69 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.37 Total: -6.89 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.02 -6.36 -35.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427228.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.087 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds