Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47263 * 2 1 4 4 C 1.53002 * 109.47329 * 120.00097 * 2 1 3 5 5 H 1.08996 * 109.47043 * 182.77970 * 4 2 1 6 6 C 1.53003 * 109.46837 * 62.78333 * 4 2 1 7 7 C 1.50709 * 109.46977 * 65.62555 * 6 4 2 8 8 H 1.07997 * 119.99586 * 5.11239 * 7 6 4 9 9 C 1.37875 * 119.99747 * 185.11385 * 7 6 4 10 10 N 1.31510 * 120.00327 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99785 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47243 * 90.00100 * 11 9 7 13 13 H 1.48504 * 109.47376 * 209.99802 * 11 9 7 14 14 H 1.48499 * 109.47525 * 330.00084 * 11 9 7 15 15 C 1.53000 * 109.47218 * 302.78796 * 4 2 1 16 16 H 1.09003 * 112.67809 * 51.00323 * 15 4 2 17 17 C 1.53358 * 113.39168 * 181.58058 * 15 4 2 18 18 C 1.53368 * 81.26312 * 141.38123 * 17 15 4 19 19 O 1.43349 * 88.44391 * 333.51464 * 18 17 15 20 20 H 1.09006 * 109.46865 * 300.00002 * 1 2 3 21 21 H 1.09001 * 109.47379 * 59.99609 * 1 2 3 22 22 H 1.08997 * 109.47377 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46865 * 239.99998 * 2 1 3 24 24 H 1.09005 * 109.47158 * 174.22337 * 3 2 1 25 25 H 1.09000 * 109.47423 * 294.22248 * 3 2 1 26 26 H 1.09001 * 109.47079 * 54.22538 * 3 2 1 27 27 H 1.08999 * 109.47375 * 185.62378 * 6 4 2 28 28 H 1.09004 * 109.47252 * 305.62612 * 6 4 2 29 29 H 0.97001 * 120.00614 * 179.97438 * 10 9 7 30 30 H 1.09005 * 114.56425 * 254.47392 * 17 15 4 31 31 H 1.08997 * 114.56900 * 28.28738 * 17 15 4 32 32 H 1.08996 * 113.39358 * 218.61428 * 18 17 15 33 33 H 1.09004 * 113.43029 * 88.41633 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1288 -0.6783 1.2744 6 6 1.5880 -2.1826 1.2146 7 6 2.2561 -2.8879 0.0625 8 1 2.9970 -2.3719 -0.5300 9 6 1.9214 -4.1919 -0.2350 10 7 1.0196 -4.8204 0.4869 11 14 2.7490 -5.0659 -1.6635 12 1 3.9744 -5.7522 -1.1810 13 1 1.8154 -6.0669 -2.2394 14 1 3.1154 -4.0737 -2.7058 15 6 1.4736 -0.0417 2.4975 16 1 0.3918 0.0847 2.4530 17 6 1.9606 -0.6721 3.8080 18 6 1.9831 0.8006 4.2354 19 8 2.1722 1.1565 2.8598 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1251 1.4442 0.1034 25 1 1.7636 1.9256 -0.9372 26 1 1.5947 1.9853 0.8338 27 1 1.8646 -2.6708 2.1491 28 1 0.5061 -2.2254 1.0887 29 1 0.7838 -5.7377 0.2774 30 1 1.2170 -1.2817 4.3214 31 1 2.9425 -1.1415 3.7476 32 1 2.8330 1.0544 4.8689 33 1 1.0347 1.1474 4.6458 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260427228.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = -54.467492 kcal Electronic energy + Delta-G solvation = -13364.259006 eV Core-core repulsion = 11196.829061 eV Total energy + Delta-G solvation = -2167.429945 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.75668 -37.80581 -34.77726 -32.01933 -30.24454 -28.20619 -27.81920 -25.19075 -23.38268 -21.75471 -19.90229 -18.44488 -17.41194 -16.80202 -16.29836 -16.14875 -15.48529 -15.02421 -14.36653 -14.07005 -13.68544 -13.48455 -13.05615 -12.88978 -12.63921 -12.51395 -12.44813 -12.16255 -11.92576 -11.66390 -11.44533 -11.21893 -11.01697 -10.68648 -10.45553 -10.41131 -8.15638 -6.22832 1.39901 1.40240 1.51009 2.42391 3.08674 3.18075 3.45846 3.93205 4.18002 4.25414 4.29076 4.34114 4.51879 4.65115 4.78102 4.88902 4.92029 4.94033 4.99980 5.06540 5.17149 5.26914 5.32997 5.37860 5.42451 5.50690 5.64650 5.72809 5.85837 5.95564 6.33124 6.91590 7.44131 8.95863 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040401 B = 0.010570 C = 0.009374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.883544 B = 2648.264347 C = 2986.341078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 C -0.131 4.131 4 C -0.068 4.068 5 H 0.045 0.955 6 C 0.038 3.962 7 C -0.526 4.526 8 H 0.052 0.948 9 C 0.004 3.996 10 N -0.930 5.930 11 Si 0.953 3.047 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.065 3.935 16 H 0.093 0.907 17 C -0.185 4.185 18 C 0.031 3.969 19 O -0.385 6.385 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.039 0.961 23 H 0.052 0.948 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.060 0.940 27 H -0.007 1.007 28 H 0.008 0.992 29 H 0.261 0.739 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 9.952 3.957 10.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 C -0.188 4.188 4 C -0.087 4.087 5 H 0.064 0.936 6 C 0.001 3.999 7 C -0.564 4.564 8 H 0.070 0.930 9 C -0.193 4.193 10 N -0.571 5.571 11 Si 0.778 3.222 12 H -0.201 1.201 13 H -0.208 1.208 14 H -0.191 1.191 15 C 0.008 3.992 16 H 0.111 0.889 17 C -0.223 4.223 18 C -0.045 4.045 19 O -0.304 6.304 20 H 0.078 0.922 21 H 0.079 0.921 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.011 0.989 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.046 10.026 3.821 10.730 hybrid contribution 0.321 -1.090 -0.623 1.296 sum 0.275 8.936 3.198 9.495 Atomic orbital electron populations 1.21822 0.95248 1.00966 1.01537 1.20974 0.96145 0.95667 0.97534 1.21750 1.00228 0.95390 1.01444 1.21240 0.98445 0.95561 0.93461 0.93616 1.18946 0.95836 0.90094 0.94986 1.21552 1.22296 0.97697 1.14833 0.92954 1.25799 0.95872 0.98469 0.99190 1.70067 1.33450 1.12221 1.41354 0.85631 0.78357 0.78414 0.79773 1.20113 1.20820 1.19132 1.23406 0.96825 0.83803 0.95195 0.88928 1.24280 1.02806 0.98288 0.96905 1.23680 1.03181 0.92267 0.85376 1.89852 1.75662 1.44252 1.20640 0.92151 0.92113 0.94181 0.92962 0.93996 0.92371 0.92068 0.98886 0.97328 0.92973 0.89968 0.89813 0.88351 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 8.55 71.98 0.62 -4.31 16 2 C -0.08 -3.27 2.58 -10.79 -0.03 -3.30 16 3 C -0.13 -4.28 8.45 71.98 0.61 -3.67 16 4 C -0.07 -2.87 1.62 -10.79 -0.02 -2.88 16 5 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 6 C 0.04 1.96 4.19 29.85 0.13 2.09 16 7 C -0.53 -29.55 8.27 25.60 0.21 -29.34 16 8 H 0.05 2.90 7.31 -2.91 -0.02 2.88 16 9 C 0.00 0.24 5.46 84.65 0.46 0.71 16 10 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 11 Si 0.95 44.54 29.54 68.60 2.03 46.56 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 C 0.06 2.27 2.77 22.46 0.06 2.33 16 16 H 0.09 3.09 6.16 -2.39 -0.01 3.08 16 17 C -0.19 -5.79 7.19 30.84 0.22 -5.57 16 18 C 0.03 0.80 8.74 63.85 0.56 1.36 16 19 O -0.38 -12.73 10.60 -148.98 -1.58 -14.31 16 20 H 0.06 1.91 6.22 -2.38 -0.01 1.90 16 21 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 22 H 0.04 1.64 6.38 -2.39 -0.02 1.62 16 23 H 0.05 2.26 7.03 -2.38 -0.02 2.25 16 24 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.95 6.45 -2.39 -0.02 1.93 16 27 H -0.01 -0.39 7.30 -2.39 -0.02 -0.41 16 28 H 0.01 0.46 6.23 -2.38 -0.01 0.45 16 29 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.08 2.82 8.13 -2.39 -0.02 2.80 16 32 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -62.00 259.08 4.61 -57.39 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.06 Total: 8.47 kcal Atomic # 6 Polarization: -45.41 SS G_CDS: 2.82 Total: -42.59 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.28 Total: -55.51 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -1.58 Total: -14.31 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -62.00 4.61 -57.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427228.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.920 kcal (2) G-P(sol) polarization free energy of solvation -62.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds