Wall clock time and date at job start Mon Mar 30 2020 02:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47333 * 2 1 4 4 C 1.53004 * 109.46880 * 240.00294 * 2 1 3 5 5 H 1.09001 * 109.47506 * 60.66865 * 4 2 1 6 6 C 1.53004 * 109.47112 * 180.67337 * 4 2 1 7 7 C 1.50700 * 109.47555 * 60.42514 * 6 4 2 8 8 H 1.08002 * 119.99284 * 0.02562 * 7 6 4 9 9 C 1.37873 * 119.99950 * 180.02562 * 7 6 4 10 10 N 1.31511 * 120.00101 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99735 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47088 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47249 * 119.99679 * 11 9 7 14 14 H 1.48496 * 109.46990 * 239.99921 * 11 9 7 15 15 C 1.53002 * 109.46803 * 300.66616 * 4 2 1 16 16 H 1.08998 * 113.03754 * 311.97958 * 15 4 2 17 17 C 1.54039 * 113.86108 * 180.02562 * 15 4 2 18 18 C 1.54039 * 85.82307 * 223.27554 * 17 15 4 19 19 O 1.44174 * 113.86225 * 84.13479 * 15 4 2 20 20 H 1.08998 * 109.46881 * 299.99822 * 1 2 3 21 21 H 1.08999 * 109.46957 * 60.00082 * 1 2 3 22 22 H 1.08995 * 109.46879 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47310 * 120.00325 * 2 1 3 24 24 H 1.09005 * 109.46881 * 293.95974 * 3 2 1 25 25 H 1.09001 * 109.46999 * 53.95538 * 3 2 1 26 26 H 1.08993 * 109.47064 * 173.96125 * 3 2 1 27 27 H 1.08997 * 109.47148 * 180.43279 * 6 4 2 28 28 H 1.09005 * 109.46695 * 300.42681 * 6 4 2 29 29 H 0.97001 * 119.99687 * 180.02562 * 10 9 7 30 30 H 1.09000 * 113.81932 * 337.50471 * 17 15 4 31 31 H 1.08997 * 113.81335 * 109.05201 * 17 15 4 32 32 H 1.08995 * 113.86816 * 136.72422 * 18 17 15 33 33 H 1.08993 * 113.86733 * 268.30827 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6865 -0.2005 -2.1393 6 6 3.5699 -0.7359 -1.2409 7 6 4.0587 -1.4651 -0.0160 8 1 3.3489 -1.8771 0.6861 9 6 5.4117 -1.6060 0.2084 10 7 6.2758 -1.1047 -0.6469 11 14 6.0174 -2.5105 1.7265 12 1 4.8535 -2.9767 2.5222 13 1 6.8341 -3.6799 1.3131 14 1 6.8462 -1.5944 2.5506 15 6 1.5163 -2.1588 -1.2577 16 1 1.6566 -2.6695 -0.3051 17 6 1.9719 -2.9809 -2.4781 18 6 0.5199 -3.4919 -2.5344 19 8 0.1890 -2.2928 -1.8046 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5139 0.8899 24 1 1.7677 1.9242 -0.9392 25 1 1.5911 1.9866 0.8309 26 1 3.1246 1.4444 0.1081 27 1 3.9333 -1.2430 -2.1348 28 1 3.9430 0.2882 -1.2272 29 1 7.2277 -1.2042 -0.4892 30 1 2.2582 -2.3729 -3.3364 31 1 2.7019 -3.7545 -2.2399 32 1 0.1027 -3.5251 -3.5408 33 1 0.3540 -4.4115 -1.9734 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260427230.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:54 Heat of formation + Delta-G solvation = -41.805158 kcal Electronic energy + Delta-G solvation = -13430.408391 eV Core-core repulsion = 11263.527525 eV Total energy + Delta-G solvation = -2166.880865 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.84007 -36.14527 -32.70844 -30.31096 -28.44012 -27.02892 -25.63454 -23.70406 -21.72225 -19.63059 -18.89003 -16.23587 -15.64593 -15.24445 -15.03281 -14.43322 -13.63930 -13.32232 -12.50796 -12.25380 -11.83457 -11.69497 -11.59514 -11.44033 -11.11745 -10.81097 -10.58730 -10.47098 -10.24565 -10.11160 -9.88701 -9.47498 -9.20591 -8.98709 -8.63416 -8.33193 -5.99470 -4.00335 3.29842 3.38430 3.41403 4.28766 4.46046 5.02361 5.36816 5.43046 5.55338 5.72004 5.77999 5.82885 5.95469 6.17271 6.27940 6.37105 6.39996 6.47212 6.52392 6.54850 6.66428 6.80202 6.90617 6.97201 7.06632 7.18132 7.36162 7.69387 7.80071 8.00338 8.43590 9.05390 9.63210 11.11770 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030343 B = 0.012844 C = 0.010664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.548360 B = 2179.457477 C = 2624.966119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.071 4.071 5 H 0.050 0.950 6 C 0.027 3.973 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.058 3.942 10 N -0.895 5.895 11 Si 0.884 3.116 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.090 3.910 16 H 0.090 0.910 17 C -0.173 4.173 18 C 0.025 3.975 19 O -0.390 6.390 20 H 0.038 0.962 21 H 0.044 0.956 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.038 0.962 26 H 0.068 0.932 27 H 0.017 0.983 28 H 0.025 0.975 29 H 0.259 0.741 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.363 -1.393 -1.218 8.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.197 4.197 4 C -0.090 4.090 5 H 0.068 0.932 6 C -0.010 4.010 7 C -0.547 4.547 8 H 0.075 0.925 9 C -0.143 4.143 10 N -0.535 5.535 11 Si 0.712 3.288 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.211 1.211 15 C 0.033 3.967 16 H 0.108 0.892 17 C -0.211 4.211 18 C -0.052 4.052 19 O -0.310 6.310 20 H 0.057 0.943 21 H 0.063 0.937 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.035 0.965 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.413 -1.216 -1.220 8.587 hybrid contribution 0.680 -0.664 0.779 1.229 sum -7.733 -1.881 -0.441 7.970 Atomic orbital electron populations 1.21897 0.96778 1.01554 0.99873 1.21042 0.93554 0.96120 0.99439 1.21789 1.02344 0.95910 0.99675 1.21353 0.99335 0.91852 0.96410 0.93159 1.19150 0.87000 0.97694 0.97183 1.21242 0.91266 1.34898 1.07315 0.92498 1.24990 0.97174 0.95865 0.96294 1.69967 1.01678 1.45921 1.35905 0.86660 0.78908 0.79644 0.83558 1.19763 1.21192 1.21124 1.23455 0.79362 0.97593 0.96276 0.89231 1.24524 0.96506 1.00077 0.99988 1.23767 0.95190 0.89630 0.96629 1.89666 1.33713 1.41187 1.66413 0.94283 0.93692 0.92346 0.90491 0.94007 0.94258 0.91327 0.96488 0.95628 0.93173 0.89457 0.91098 0.90367 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.61 37.16 0.32 -2.14 16 2 C -0.08 -1.61 2.27 -90.61 -0.21 -1.81 16 3 C -0.14 -2.57 8.68 37.16 0.32 -2.25 16 4 C -0.07 -1.47 1.77 -90.61 -0.16 -1.63 16 5 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 6 C 0.03 0.65 4.23 -27.88 -0.12 0.54 16 7 C -0.51 -13.45 7.77 -34.44 -0.27 -13.72 16 8 H 0.06 1.47 5.86 -52.49 -0.31 1.17 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 11 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 12 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.09 1.75 2.62 -26.28 -0.07 1.68 16 16 H 0.09 1.83 7.27 -51.93 -0.38 1.45 16 17 C -0.17 -3.07 7.01 -25.65 -0.18 -3.25 16 18 C 0.03 0.38 9.21 37.61 0.35 0.73 16 19 O -0.39 -7.22 10.59 -35.23 -0.37 -7.59 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.06 1.03 6.23 -51.93 -0.32 0.71 16 23 H 0.08 1.61 6.62 -51.93 -0.34 1.27 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.41 6.77 -51.93 -0.35 1.06 16 27 H 0.02 0.44 7.43 -51.93 -0.39 0.06 16 28 H 0.03 0.67 6.56 -51.93 -0.34 0.33 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.09 1.55 8.03 -51.93 -0.42 1.13 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 260.59 15.07 3.93 3.93 Total: -1.00 -28.32 260.59 -6.20 -34.53 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.36 Total: -1.26 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -0.11 Total: -20.36 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.74 Total: -25.38 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.37 Total: -7.59 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.32 -6.20 -34.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427230.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.279 kcal (2) G-P(sol) polarization free energy of solvation -28.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds