Wall clock time and date at job start Mon Mar 30 2020 02:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47333 * 2 1 4 4 C 1.53004 * 109.46880 * 240.00294 * 2 1 3 5 5 H 1.09001 * 109.47506 * 60.66865 * 4 2 1 6 6 C 1.53004 * 109.47112 * 180.67337 * 4 2 1 7 7 C 1.50700 * 109.47555 * 60.42514 * 6 4 2 8 8 H 1.08002 * 119.99284 * 0.02562 * 7 6 4 9 9 C 1.37873 * 119.99950 * 180.02562 * 7 6 4 10 10 N 1.31511 * 120.00101 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99735 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47088 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47249 * 119.99679 * 11 9 7 14 14 H 1.48496 * 109.46990 * 239.99921 * 11 9 7 15 15 C 1.53002 * 109.46803 * 300.66616 * 4 2 1 16 16 H 1.08998 * 113.03754 * 311.97958 * 15 4 2 17 17 C 1.54039 * 113.86108 * 180.02562 * 15 4 2 18 18 C 1.54039 * 85.82307 * 223.27554 * 17 15 4 19 19 O 1.44174 * 113.86225 * 84.13479 * 15 4 2 20 20 H 1.08998 * 109.46881 * 299.99822 * 1 2 3 21 21 H 1.08999 * 109.46957 * 60.00082 * 1 2 3 22 22 H 1.08995 * 109.46879 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47310 * 120.00325 * 2 1 3 24 24 H 1.09005 * 109.46881 * 293.95974 * 3 2 1 25 25 H 1.09001 * 109.46999 * 53.95538 * 3 2 1 26 26 H 1.08993 * 109.47064 * 173.96125 * 3 2 1 27 27 H 1.08997 * 109.47148 * 180.43279 * 6 4 2 28 28 H 1.09005 * 109.46695 * 300.42681 * 6 4 2 29 29 H 0.97001 * 119.99687 * 180.02562 * 10 9 7 30 30 H 1.09000 * 113.81932 * 337.50471 * 17 15 4 31 31 H 1.08997 * 113.81335 * 109.05201 * 17 15 4 32 32 H 1.08995 * 113.86816 * 136.72422 * 18 17 15 33 33 H 1.08993 * 113.86733 * 268.30827 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6865 -0.2005 -2.1393 6 6 3.5699 -0.7359 -1.2409 7 6 4.0587 -1.4651 -0.0160 8 1 3.3489 -1.8771 0.6861 9 6 5.4117 -1.6060 0.2084 10 7 6.2758 -1.1047 -0.6469 11 14 6.0174 -2.5105 1.7265 12 1 4.8535 -2.9767 2.5222 13 1 6.8341 -3.6799 1.3131 14 1 6.8462 -1.5944 2.5506 15 6 1.5163 -2.1588 -1.2577 16 1 1.6566 -2.6695 -0.3051 17 6 1.9719 -2.9809 -2.4781 18 6 0.5199 -3.4919 -2.5344 19 8 0.1890 -2.2928 -1.8046 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5139 0.8899 24 1 1.7677 1.9242 -0.9392 25 1 1.5911 1.9866 0.8309 26 1 3.1246 1.4444 0.1081 27 1 3.9333 -1.2430 -2.1348 28 1 3.9430 0.2882 -1.2272 29 1 7.2277 -1.2042 -0.4892 30 1 2.2582 -2.3729 -3.3364 31 1 2.7019 -3.7545 -2.2399 32 1 0.1027 -3.5251 -3.5408 33 1 0.3540 -4.4115 -1.9734 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260427230.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:54 Heat of formation + Delta-G solvation = -58.066442 kcal Electronic energy + Delta-G solvation = -13431.113533 eV Core-core repulsion = 11263.527525 eV Total energy + Delta-G solvation = -2167.586008 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.29736 -37.76868 -34.72195 -32.02786 -29.92639 -28.59387 -27.34422 -25.40524 -23.40457 -21.08039 -20.61052 -18.16524 -17.11324 -16.80674 -16.60495 -16.27386 -15.26514 -14.84925 -14.20292 -13.97346 -13.49964 -13.21930 -13.12676 -12.98198 -12.85516 -12.52851 -12.35473 -12.27982 -11.97355 -11.56311 -11.50249 -11.10909 -10.83733 -10.79466 -10.44108 -10.28765 -8.12211 -6.18646 1.40015 1.42538 1.53130 2.44718 2.87290 3.23132 3.61978 3.95549 4.19149 4.25605 4.32645 4.45194 4.54815 4.70031 4.79624 4.89278 4.96986 4.97892 5.08912 5.11913 5.14552 5.29652 5.37793 5.43584 5.49826 5.54706 5.64510 5.75957 5.82519 5.93488 6.35692 6.95675 7.48571 8.99931 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030343 B = 0.012844 C = 0.010664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.548360 B = 2179.457477 C = 2624.966119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 C -0.135 4.135 4 C -0.065 4.065 5 H 0.051 0.949 6 C 0.036 3.964 7 C -0.508 4.508 8 H 0.061 0.939 9 C 0.003 3.997 10 N -0.934 5.934 11 Si 0.948 3.052 12 H -0.262 1.262 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.087 3.913 16 H 0.080 0.920 17 C -0.179 4.179 18 C 0.037 3.963 19 O -0.399 6.399 20 H 0.059 0.941 21 H 0.049 0.951 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.037 0.963 27 H -0.007 1.007 28 H 0.001 0.999 29 H 0.259 0.741 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.898 -2.069 -0.598 10.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 C -0.193 4.193 4 C -0.083 4.083 5 H 0.070 0.930 6 C -0.001 4.001 7 C -0.546 4.546 8 H 0.079 0.921 9 C -0.194 4.194 10 N -0.576 5.576 11 Si 0.775 3.225 12 H -0.186 1.186 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.030 3.970 16 H 0.098 0.902 17 C -0.217 4.217 18 C -0.040 4.040 19 O -0.319 6.319 20 H 0.078 0.922 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.011 0.989 28 H 0.019 0.981 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.969 -1.899 -0.599 10.166 hybrid contribution 1.140 -0.442 0.535 1.335 sum -8.829 -2.342 -0.064 9.134 Atomic orbital electron populations 1.21767 0.94466 1.01628 1.01112 1.21018 0.95423 0.96092 0.97658 1.21730 1.00428 0.95895 1.01211 1.21199 0.96424 0.93369 0.97350 0.93048 1.18969 0.89955 0.95586 0.95593 1.21520 0.91387 1.34115 1.07588 0.92058 1.25796 0.97581 0.96879 0.99187 1.70096 1.01934 1.47611 1.37915 0.85640 0.78525 0.78321 0.80062 1.18576 1.20917 1.21030 1.23273 0.80517 0.96609 0.96599 0.90231 1.24539 0.98385 0.99806 0.98977 1.23993 0.92631 0.89250 0.98092 1.89638 1.32701 1.42845 1.66733 0.92240 0.93204 0.92846 0.92319 0.93078 0.91870 0.94350 0.98901 0.98065 0.93198 0.90035 0.91723 0.87629 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 8.61 71.98 0.62 -3.61 16 2 C -0.08 -3.15 2.27 -10.79 -0.02 -3.18 16 3 C -0.14 -4.88 8.68 71.98 0.62 -4.25 16 4 C -0.06 -2.68 1.77 -10.79 -0.02 -2.69 16 5 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 6 C 0.04 1.82 4.23 29.85 0.13 1.94 16 7 C -0.51 -27.15 7.77 25.60 0.20 -26.95 16 8 H 0.06 3.17 5.86 -2.91 -0.02 3.16 16 9 C 0.00 0.15 5.46 84.65 0.46 0.61 16 10 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 11 Si 0.95 43.53 29.54 68.60 2.03 45.56 16 12 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 15 C 0.09 3.32 2.62 30.89 0.08 3.41 16 16 H 0.08 3.19 7.27 -2.39 -0.02 3.18 16 17 C -0.18 -6.19 7.01 31.30 0.22 -5.97 16 18 C 0.04 1.02 9.21 72.28 0.67 1.68 16 19 O -0.40 -13.92 10.59 -148.98 -1.58 -15.49 16 20 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 21 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.05 1.76 6.23 -2.39 -0.01 1.75 16 23 H 0.06 2.42 6.62 -2.39 -0.02 2.41 16 24 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.04 1.59 6.77 -2.39 -0.02 1.57 16 27 H -0.01 -0.40 7.43 -2.39 -0.02 -0.42 16 28 H 0.00 0.06 6.56 -2.38 -0.02 0.04 16 29 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 30 H 0.08 2.87 8.03 -2.39 -0.02 2.85 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -60.13 260.59 4.75 -55.38 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.06 Total: 8.94 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 2.95 Total: -39.02 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.28 Total: -55.37 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -1.58 Total: -15.49 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -60.13 4.75 -55.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427230.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.683 kcal (2) G-P(sol) polarization free energy of solvation -60.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds