Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00003 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47137 * 89.99320 * 9 7 5 11 11 H 1.48501 * 109.47453 * 209.99503 * 9 7 5 12 12 H 1.48500 * 109.46737 * 329.99669 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 H 1.09004 * 109.48063 * 180.02562 * 13 2 1 15 15 C 1.53096 * 109.47649 * 300.05476 * 13 2 1 16 16 C 1.53178 * 109.15929 * 177.59207 * 15 13 2 17 17 C 1.53174 * 109.03796 * 303.01849 * 16 15 13 18 18 C 1.53094 * 109.16215 * 56.98543 * 17 16 15 19 19 O 1.42897 * 109.48252 * 59.99802 * 13 2 1 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 24 24 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 25 25 H 0.96995 * 120.00234 * 180.02562 * 8 7 5 26 26 H 1.09000 * 109.52216 * 297.49523 * 15 13 2 27 27 H 1.08991 * 109.52074 * 57.68668 * 15 13 2 28 28 H 1.09004 * 109.54230 * 183.14890 * 16 15 13 29 29 H 1.09006 * 109.61805 * 62.92996 * 16 15 13 30 30 H 1.08994 * 109.52483 * 297.07657 * 17 16 15 31 31 H 1.08998 * 109.57418 * 176.91533 * 17 16 15 32 32 H 1.09005 * 109.48287 * 182.41347 * 18 17 16 33 33 H 1.08989 * 109.48480 * 62.37077 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8512 9 14 1.4989 0.5628 -5.2497 10 1 2.5650 1.5416 -5.5823 11 1 1.3112 -0.3710 -6.3890 12 1 0.2282 1.2850 -4.9870 13 6 2.0400 -0.7213 1.2493 14 1 3.1300 -0.7210 1.2497 15 6 1.5286 -0.0005 2.4994 16 6 1.9930 -0.7626 3.7444 17 6 1.4926 -2.2079 3.6611 18 6 2.0054 -2.8434 2.3661 19 8 1.5638 -2.0686 1.2495 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 3.1263 -0.7996 -1.2055 24 1 1.6054 -1.7198 -1.2952 25 1 2.9228 -1.8423 -4.7318 26 1 1.9269 1.0138 2.5235 27 1 0.4395 0.0351 2.4793 28 1 1.5857 -0.2865 4.6363 29 1 3.0820 -0.7559 3.7926 30 1 0.4027 -2.2168 3.6645 31 1 1.8642 -2.7728 4.5160 32 1 1.6171 -3.8583 2.2806 33 1 3.0949 -2.8709 2.3812 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260498800.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = -78.683316 kcal Electronic energy + Delta-G solvation = -13180.778732 eV Core-core repulsion = 11012.298710 eV Total energy + Delta-G solvation = -2168.480022 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.14521 -34.85199 -33.27723 -32.26392 -29.55183 -26.72451 -24.95026 -23.87790 -22.29518 -19.96075 -18.93824 -16.38916 -15.65536 -15.33010 -14.53480 -14.32576 -14.24773 -13.56663 -12.92514 -12.53382 -12.33014 -11.90447 -11.58081 -11.18370 -11.09170 -10.89333 -10.78615 -10.66874 -10.23758 -10.18955 -9.91597 -9.61019 -9.20570 -8.87244 -8.69805 -8.23786 -5.89002 -3.90220 3.37334 3.43465 3.46818 4.32536 4.53659 4.98579 5.01326 5.08983 5.31232 5.46233 5.53774 5.67409 5.77996 5.89718 5.97268 6.06375 6.08713 6.13471 6.24328 6.31261 6.44758 6.59504 6.70782 7.02955 7.25674 7.29064 7.80707 7.82977 8.02388 8.16671 8.55012 9.17139 9.72245 11.22320 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.067286 B = 0.008207 C = 0.007720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.036546 B = 3410.846210 C = 3626.268316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 H 0.065 0.935 4 C 0.031 3.969 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.096 3.904 14 H 0.049 0.951 15 C -0.153 4.153 16 C -0.122 4.122 17 C -0.155 4.155 18 C 0.058 3.942 19 O -0.363 6.363 20 H 0.058 0.942 21 H 0.030 0.970 22 H 0.052 0.948 23 H 0.010 0.990 24 H 0.026 0.974 25 H 0.258 0.742 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.617 0.501 13.374 13.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.097 4.097 3 H 0.084 0.916 4 C -0.006 4.006 5 C -0.553 4.553 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.038 3.962 14 H 0.067 0.933 15 C -0.191 4.191 16 C -0.159 4.159 17 C -0.192 4.192 18 C -0.019 4.019 19 O -0.282 6.282 20 H 0.077 0.923 21 H 0.049 0.951 22 H 0.072 0.928 23 H 0.029 0.971 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.665 0.313 13.092 13.201 hybrid contribution 0.023 0.551 -0.617 0.828 sum -1.643 0.864 12.475 12.612 Atomic orbital electron populations 1.21688 0.95904 1.01401 0.99645 1.21267 0.95996 0.98178 0.94268 0.91644 1.19067 0.95730 0.96054 0.89709 1.21299 1.34543 1.08190 0.91242 0.92712 1.25016 0.95463 0.95074 0.98994 1.69982 1.39170 1.21163 1.23204 0.86657 0.78856 0.79812 0.83031 1.20825 1.21335 1.19957 1.22288 0.96800 0.82040 0.95033 0.93301 1.22316 1.02299 0.99370 0.95101 1.21591 1.00582 0.95577 0.98174 1.22183 1.01753 0.96694 0.98602 1.22481 0.98150 0.95185 0.86099 1.88060 1.73620 1.22892 1.43579 0.92324 0.95130 0.92842 0.97135 0.95555 0.93196 0.91400 0.90814 0.92197 0.92221 0.91345 0.91667 0.89521 0.93805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.51 37.16 0.32 -2.28 16 2 C -0.08 -1.68 2.23 -90.62 -0.20 -1.88 16 3 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 4 C 0.03 0.84 4.23 -27.88 -0.12 0.73 16 5 C -0.51 -14.83 8.41 -34.44 -0.29 -15.12 16 6 H 0.05 1.52 7.05 -52.49 -0.37 1.15 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.68 13.29 55.43 0.74 -26.95 16 9 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.10 1.77 2.38 -26.68 -0.06 1.71 16 14 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 15 C -0.15 -2.26 5.13 -26.59 -0.14 -2.40 16 16 C -0.12 -1.51 6.03 -26.55 -0.16 -1.67 16 17 C -0.15 -1.90 6.14 -26.59 -0.16 -2.06 16 18 C 0.06 0.86 6.84 37.21 0.25 1.11 16 19 O -0.36 -7.00 9.15 -35.23 -0.32 -7.32 16 20 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 21 H 0.03 0.52 6.38 -51.93 -0.33 0.18 16 22 H 0.05 1.12 7.68 -51.93 -0.40 0.72 16 23 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 24 H 0.03 0.77 7.84 -51.93 -0.41 0.36 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.10 6.31 -51.93 -0.33 0.78 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.62 8.14 -51.94 -0.42 0.20 16 LS Contribution 260.58 15.07 3.93 3.93 Total: -1.00 -30.99 260.58 -6.90 -37.89 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -5.56 Total: -4.30 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -0.66 Total: -20.34 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.74 Total: -26.95 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.32 Total: -7.32 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.99 -6.90 -37.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260498800.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.796 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds