Wall clock time and date at job start Mon Mar 30 2020 02:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 C 1.50703 * 109.46912 * 294.99775 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47116 * 59.99536 * 9 7 5 11 11 H 1.48500 * 109.46585 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46730 * 299.99515 * 9 7 5 13 13 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 14 14 H 1.09001 * 109.48215 * 184.97844 * 13 2 1 15 15 C 1.53098 * 109.47942 * 64.94154 * 13 2 1 16 16 C 1.53175 * 109.16267 * 182.40781 * 15 13 2 17 17 C 1.53172 * 109.03706 * 56.98270 * 16 15 13 18 18 C 1.53092 * 109.16486 * 303.02104 * 17 16 15 19 19 O 1.42900 * 109.41612 * 57.60533 * 18 17 16 20 20 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 22 22 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 23 23 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 24 24 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 25 25 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 26 26 H 1.08995 * 109.52405 * 302.32241 * 15 13 2 27 27 H 1.09003 * 109.51637 * 62.50509 * 15 13 2 28 28 H 1.08997 * 109.54432 * 297.11650 * 16 15 13 29 29 H 1.09000 * 109.61579 * 176.89677 * 16 15 13 30 30 H 1.09001 * 109.52319 * 183.11090 * 17 16 15 31 31 H 1.09000 * 109.57060 * 62.95931 * 17 16 15 32 32 H 1.09003 * 109.47856 * 297.62191 * 18 17 16 33 33 H 1.08999 * 109.49001 * 177.59526 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3756 7 6 1.9931 -0.4016 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4983 0.5628 5.2496 10 1 0.0183 0.6684 5.3091 11 1 1.9934 -0.1372 6.4621 12 1 2.0896 1.9236 5.1870 13 6 2.0401 -0.7214 -1.2492 14 1 3.1264 -0.7993 -1.2059 15 6 1.6339 0.0683 -2.4963 16 6 2.0954 -0.6905 -3.7443 17 6 1.4913 -2.0979 -3.7252 18 6 1.9028 -2.8040 -2.4306 19 8 1.4703 -2.0305 -1.3096 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6053 -1.7198 1.2952 24 1 3.1263 -0.7995 1.2057 25 1 2.9241 -1.8413 4.7318 26 1 0.5501 0.1816 -2.5188 27 1 2.1034 1.0518 -2.4736 28 1 3.1831 -0.7606 -3.7470 29 1 1.7618 -0.1626 -4.6378 30 1 1.8586 -2.6637 -4.5814 31 1 0.4045 -2.0295 -3.7731 32 1 2.9874 -2.9092 -2.4030 33 1 1.4408 -3.7904 -2.3917 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260498804.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:25 Heat of formation + Delta-G solvation = -79.270102 kcal Electronic energy + Delta-G solvation = -13171.847849 eV Core-core repulsion = 11003.342382 eV Total energy + Delta-G solvation = -2168.505467 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.14350 -34.85148 -33.27776 -32.26140 -29.57037 -26.71808 -24.97011 -23.84818 -22.31381 -19.93998 -18.96697 -16.37557 -15.68127 -15.32808 -14.54420 -14.33035 -14.24854 -13.55090 -12.92027 -12.52525 -12.33063 -11.92058 -11.59456 -11.16655 -11.08904 -10.89869 -10.77363 -10.69330 -10.25114 -10.19918 -9.90663 -9.61786 -9.21895 -8.89476 -8.69497 -8.24070 -5.89372 -3.90670 3.38703 3.42886 3.45316 4.31706 4.53400 4.98276 5.00913 5.08762 5.31000 5.45795 5.53514 5.67132 5.77813 5.90034 5.96955 6.06299 6.08406 6.14491 6.24442 6.31163 6.44460 6.58977 6.71723 7.04150 7.26209 7.29761 7.79231 7.81821 8.01421 8.15375 8.54414 9.16292 9.71785 11.21952 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.067595 B = 0.008143 C = 0.007706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.130214 B = 3437.620905 C = 3632.755679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.079 4.079 3 H 0.065 0.935 4 C 0.031 3.969 5 C -0.515 4.515 6 H 0.054 0.946 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.096 3.904 14 H 0.050 0.950 15 C -0.153 4.153 16 C -0.122 4.122 17 C -0.154 4.154 18 C 0.058 3.942 19 O -0.364 6.364 20 H 0.053 0.947 21 H 0.057 0.943 22 H 0.029 0.971 23 H 0.025 0.975 24 H 0.010 0.990 25 H 0.259 0.741 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 0.581 -13.371 13.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.097 4.097 3 H 0.084 0.916 4 C -0.006 4.006 5 C -0.553 4.553 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.038 3.962 14 H 0.068 0.932 15 C -0.190 4.190 16 C -0.159 4.159 17 C -0.192 4.192 18 C -0.019 4.019 19 O -0.282 6.282 20 H 0.072 0.928 21 H 0.076 0.924 22 H 0.048 0.952 23 H 0.043 0.957 24 H 0.029 0.971 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.573 0.395 -13.093 13.193 hybrid contribution 0.025 0.550 0.622 0.831 sum -1.547 0.945 -12.471 12.602 Atomic orbital electron populations 1.21651 0.95838 1.01446 0.99557 1.21270 0.96084 0.98197 0.94145 0.91631 1.19086 0.95708 0.96022 0.89793 1.21255 1.34623 1.08240 0.91229 0.92742 1.25015 0.95421 0.95085 0.98990 1.69969 1.39071 1.21179 1.23334 0.86714 0.78872 0.80082 0.82642 1.20325 1.21395 1.20372 1.22300 0.96313 0.82624 0.94934 0.93215 1.22300 1.02325 0.99261 0.95138 1.21587 1.00322 0.95829 0.98184 1.22182 1.01610 0.96832 0.98600 1.22480 0.98641 0.94831 0.85958 1.88048 1.69307 1.26270 1.44624 0.92762 0.92383 0.95220 0.95662 0.97124 0.93121 0.90941 0.91375 0.92202 0.92181 0.91666 0.91349 0.93785 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.56 37.16 0.32 -2.26 16 2 C -0.08 -1.68 2.17 -90.62 -0.20 -1.88 16 3 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 4 C 0.03 0.83 4.29 -27.88 -0.12 0.71 16 5 C -0.52 -14.84 8.41 -34.44 -0.29 -15.13 16 6 H 0.05 1.51 7.05 -52.49 -0.37 1.14 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.10 1.77 2.32 -26.68 -0.06 1.71 16 14 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 15 C -0.15 -2.25 5.22 -26.59 -0.14 -2.39 16 16 C -0.12 -1.51 6.03 -26.55 -0.16 -1.67 16 17 C -0.15 -1.89 6.14 -26.59 -0.16 -2.05 16 18 C 0.06 0.85 6.84 37.20 0.25 1.11 16 19 O -0.36 -6.97 9.15 -35.23 -0.32 -7.29 16 20 H 0.05 1.14 7.56 -51.93 -0.39 0.75 16 21 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 22 H 0.03 0.51 6.52 -51.93 -0.34 0.17 16 23 H 0.02 0.74 7.96 -51.93 -0.41 0.32 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.07 1.08 6.46 -51.93 -0.34 0.75 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 260.97 15.07 3.93 3.93 Total: -1.00 -30.91 260.97 -6.90 -37.81 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -5.57 Total: -4.29 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -0.65 Total: -20.32 kcal Atomic # 7 Polarization: -27.67 SS G_CDS: 0.74 Total: -26.93 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.32 Total: -7.29 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.91 -6.90 -37.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260498804.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.458 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds