Wall clock time and date at job start Mon Mar 30 2020 02:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 C 1.50703 * 109.46912 * 294.99775 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47116 * 59.99536 * 9 7 5 11 11 H 1.48500 * 109.46585 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46730 * 299.99515 * 9 7 5 13 13 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 14 14 H 1.09001 * 109.48215 * 184.97844 * 13 2 1 15 15 C 1.53098 * 109.47942 * 64.94154 * 13 2 1 16 16 C 1.53175 * 109.16267 * 182.40781 * 15 13 2 17 17 C 1.53172 * 109.03706 * 56.98270 * 16 15 13 18 18 C 1.53092 * 109.16486 * 303.02104 * 17 16 15 19 19 O 1.42900 * 109.41612 * 57.60533 * 18 17 16 20 20 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 22 22 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 23 23 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 24 24 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 25 25 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 26 26 H 1.08995 * 109.52405 * 302.32241 * 15 13 2 27 27 H 1.09003 * 109.51637 * 62.50509 * 15 13 2 28 28 H 1.08997 * 109.54432 * 297.11650 * 16 15 13 29 29 H 1.09000 * 109.61579 * 176.89677 * 16 15 13 30 30 H 1.09001 * 109.52319 * 183.11090 * 17 16 15 31 31 H 1.09000 * 109.57060 * 62.95931 * 17 16 15 32 32 H 1.09003 * 109.47856 * 297.62191 * 18 17 16 33 33 H 1.08999 * 109.49001 * 177.59526 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3756 7 6 1.9931 -0.4016 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4983 0.5628 5.2496 10 1 0.0183 0.6684 5.3091 11 1 1.9934 -0.1372 6.4621 12 1 2.0896 1.9236 5.1870 13 6 2.0401 -0.7214 -1.2492 14 1 3.1264 -0.7993 -1.2059 15 6 1.6339 0.0683 -2.4963 16 6 2.0954 -0.6905 -3.7443 17 6 1.4913 -2.0979 -3.7252 18 6 1.9028 -2.8040 -2.4306 19 8 1.4703 -2.0305 -1.3096 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6053 -1.7198 1.2952 24 1 3.1263 -0.7995 1.2057 25 1 2.9241 -1.8413 4.7318 26 1 0.5501 0.1816 -2.5188 27 1 2.1034 1.0518 -2.4736 28 1 3.1831 -0.7606 -3.7470 29 1 1.7618 -0.1626 -4.6378 30 1 1.8586 -2.6637 -4.5814 31 1 0.4045 -2.0295 -3.7731 32 1 2.9874 -2.9092 -2.4030 33 1 1.4408 -3.7904 -2.3917 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260498804.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:25 Heat of formation + Delta-G solvation = -98.104008 kcal Electronic energy + Delta-G solvation = -13172.664548 eV Core-core repulsion = 11003.342382 eV Total energy + Delta-G solvation = -2169.322167 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.47623 -36.61697 -34.46699 -34.31777 -31.05030 -28.67124 -26.50823 -25.31513 -23.91596 -21.21644 -20.58129 -18.51912 -17.12479 -16.63579 -16.52590 -15.67791 -15.39779 -15.02299 -14.58207 -14.34949 -13.54822 -13.51906 -13.31901 -12.90196 -12.71512 -12.52678 -12.37929 -12.08579 -11.89477 -11.64537 -11.57373 -11.20334 -11.06882 -10.77688 -10.51796 -10.14020 -8.15316 -6.25817 1.39845 1.43717 1.51251 2.43040 3.01920 3.17149 3.86807 3.96231 4.02388 4.11669 4.27997 4.40629 4.49766 4.56995 4.69055 4.81822 4.91240 4.93885 5.02523 5.10320 5.15630 5.25255 5.29023 5.39818 5.45993 5.53646 5.56832 5.83963 5.92490 6.29975 6.51397 6.91234 7.42275 8.96664 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.067595 B = 0.008143 C = 0.007706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.130214 B = 3437.620905 C = 3632.755679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.076 4.076 3 H 0.072 0.928 4 C 0.040 3.960 5 C -0.534 4.534 6 H 0.064 0.936 7 C -0.005 4.005 8 N -0.937 5.937 9 Si 0.964 3.036 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.097 3.903 14 H 0.036 0.964 15 C -0.146 4.146 16 C -0.120 4.120 17 C -0.147 4.147 18 C 0.047 3.953 19 O -0.398 6.398 20 H 0.037 0.963 21 H 0.043 0.957 22 H 0.065 0.935 23 H -0.013 1.013 24 H -0.021 1.021 25 H 0.261 0.739 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 1.879 -14.639 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.095 4.095 3 H 0.091 0.909 4 C 0.003 3.997 5 C -0.571 4.571 6 H 0.082 0.918 7 C -0.202 4.202 8 N -0.578 5.578 9 Si 0.789 3.211 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.040 3.960 14 H 0.054 0.946 15 C -0.183 4.183 16 C -0.157 4.157 17 C -0.185 4.185 18 C -0.030 4.030 19 O -0.318 6.318 20 H 0.056 0.944 21 H 0.062 0.938 22 H 0.084 0.916 23 H 0.006 0.994 24 H -0.003 1.003 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.330 1.700 -14.383 14.669 hybrid contribution 0.292 0.070 1.003 1.047 sum -2.038 1.770 -13.380 13.650 Atomic orbital electron populations 1.21534 0.94659 1.00697 1.00584 1.21161 0.97014 0.98132 0.93165 0.90939 1.18916 0.93482 0.94704 0.92607 1.21687 1.34583 1.08677 0.92201 0.91823 1.26020 0.95241 0.96121 1.02818 1.70127 1.40306 1.23047 1.24282 0.85516 0.78923 0.78779 0.77924 1.19217 1.21010 1.18969 1.22159 0.95364 0.83096 0.95401 0.94552 1.22222 1.02489 0.99440 0.94157 1.21610 1.00607 0.95722 0.97774 1.22139 1.01699 0.96867 0.97797 1.22767 0.98858 0.95207 0.86134 1.87989 1.69800 1.26901 1.47115 0.94358 0.93826 0.91583 0.99440 1.00266 0.92990 0.90759 0.90180 0.91870 0.89541 0.88879 0.91294 0.93797 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.69 8.56 71.98 0.62 -4.07 16 2 C -0.08 -3.30 2.17 -10.79 -0.02 -3.32 16 3 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 4 C 0.04 2.24 4.29 29.85 0.13 2.37 16 5 C -0.53 -31.34 8.41 25.60 0.22 -31.13 16 6 H 0.06 3.54 7.05 -2.91 -0.02 3.52 16 7 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 8 N -0.94 -59.50 13.29 21.45 0.28 -59.22 16 9 Si 0.96 45.56 29.54 68.60 2.03 47.58 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 13 C 0.10 3.58 2.32 30.63 0.07 3.65 16 14 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 15 C -0.15 -3.95 5.22 30.69 0.16 -3.79 16 16 C -0.12 -2.58 6.03 30.71 0.19 -2.39 16 17 C -0.15 -3.18 6.14 30.68 0.19 -2.99 16 18 C 0.05 1.33 6.84 72.01 0.49 1.82 16 19 O -0.40 -15.43 9.15 -148.98 -1.36 -16.79 16 20 H 0.04 1.62 7.56 -2.39 -0.02 1.60 16 21 H 0.04 1.83 6.95 -2.39 -0.02 1.81 16 22 H 0.07 2.13 6.52 -2.38 -0.02 2.12 16 23 H -0.01 -0.81 7.96 -2.39 -0.02 -0.83 16 24 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 25 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 26 H 0.07 1.99 6.46 -2.39 -0.02 1.98 16 27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -68.24 260.97 4.49 -63.74 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 1.05 Total: 4.38 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 2.50 Total: -39.69 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.28 Total: -59.22 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -1.36 Total: -16.79 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -68.24 4.49 -63.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260498804.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.360 kcal (2) G-P(sol) polarization free energy of solvation -68.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds