Wall clock time and date at job start Mon Mar 30 2020 02:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00213 * 2 1 4 4 H 1.48502 * 109.47217 * 270.00481 * 3 2 1 5 5 H 1.48497 * 109.46760 * 30.00310 * 3 2 1 6 6 H 1.48493 * 109.46877 * 150.00332 * 3 2 1 7 7 C 1.37875 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00181 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00399 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47601 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46826 * 305.00312 * 10 9 7 12 12 N 1.46903 * 109.47193 * 64.99729 * 10 9 7 13 13 C 1.52996 * 109.47318 * 185.00182 * 10 9 7 14 14 C 1.53118 * 109.52328 * 180.02562 * 13 10 9 15 15 C 1.53034 * 109.28068 * 177.55504 * 14 13 10 16 16 N 1.46848 * 109.52504 * 300.82023 * 15 14 13 17 17 C 1.46847 * 111.19556 * 61.74015 * 16 15 14 18 18 C 1.53044 * 109.52516 * 298.25761 * 17 16 15 19 19 H 0.97001 * 119.99614 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.46725 * 59.99918 * 9 7 2 21 21 H 1.09004 * 109.46681 * 300.00106 * 9 7 2 22 22 H 1.00897 * 110.99537 * 60.00080 * 12 10 9 23 23 H 1.00898 * 110.99875 * 183.95642 * 12 10 9 24 24 H 1.08992 * 109.52755 * 59.87207 * 13 10 9 25 25 H 1.09001 * 109.50624 * 57.61525 * 14 13 10 26 26 H 1.09002 * 109.53418 * 297.51720 * 14 13 10 27 27 H 1.09000 * 109.46341 * 180.80474 * 15 14 13 28 28 H 1.08999 * 109.46274 * 60.83372 * 15 14 13 29 29 H 1.00901 * 111.00066 * 185.83397 * 16 15 14 30 30 H 1.08999 * 109.46628 * 58.27319 * 17 16 15 31 31 H 1.09003 * 109.46158 * 178.24166 * 17 16 15 32 32 H 1.08996 * 109.50067 * 299.23984 * 18 17 16 33 33 H 1.08999 * 109.53710 * 179.14269 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9294 -3.5552 -0.8423 12 7 3.0084 -3.6540 1.2547 13 6 1.4844 -4.9835 -0.1263 14 6 2.4783 -6.1483 -0.1258 15 6 1.7085 -7.4694 -0.1903 16 7 0.8086 -7.5700 0.9657 17 6 -0.1850 -6.4887 0.9608 18 6 0.5282 -5.1382 1.0597 19 1 -0.4849 0.8401 -0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.3961 -3.7517 2.0507 23 1 3.7160 -4.3732 1.2523 24 1 0.9161 -4.9896 -1.0563 25 1 3.0737 -6.1183 0.7867 26 1 3.1352 -6.0672 -0.9918 27 1 2.4128 -8.3012 -0.1756 28 1 1.1241 -7.5047 -1.1096 29 1 0.3598 -8.4732 0.9972 30 1 -0.7605 -6.5285 0.0360 31 1 -0.8561 -6.6081 1.8114 32 1 1.0929 -5.0923 1.9908 33 1 -0.2081 -4.3348 1.0406 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260506374.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:07 Heat of formation + Delta-G solvation = -19.145263 kcal Electronic energy + Delta-G solvation = -13140.330636 eV Core-core repulsion = 11006.725129 eV Total energy + Delta-G solvation = -2133.605508 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.91660 -35.35053 -32.48617 -30.66276 -30.19573 -28.21638 -24.84423 -23.06531 -22.28066 -20.08239 -18.53950 -16.63422 -16.02218 -15.15059 -14.44001 -14.38553 -14.13607 -13.71730 -13.26510 -13.07737 -12.46818 -12.08881 -11.81832 -11.17017 -10.96925 -10.85748 -10.56412 -10.44290 -10.37061 -10.14080 -9.77515 -9.09520 -8.94257 -8.42165 -8.22762 -7.64924 -5.85621 -3.83056 3.41507 3.47311 3.53397 4.27836 4.59349 5.05332 5.08278 5.18442 5.39699 5.46355 5.55881 5.59556 5.68309 5.82140 5.93920 6.02865 6.08772 6.23770 6.40020 6.51730 6.64102 6.74572 7.03136 7.10777 7.40289 7.64797 7.82520 8.11225 8.21209 8.35868 8.64130 9.23469 9.78561 11.26358 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.067643 B = 0.008092 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.840914 B = 3459.494971 C = 3673.915697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.048 3.952 3 Si 0.890 3.110 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.491 4.491 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.103 3.897 11 H 0.064 0.936 12 N -0.826 5.826 13 C -0.124 4.124 14 C -0.114 4.114 15 C 0.059 3.941 16 N -0.691 5.691 17 C 0.058 3.942 18 C -0.112 4.112 19 H 0.257 0.743 20 H 0.015 0.985 21 H 0.018 0.982 22 H 0.332 0.668 23 H 0.317 0.683 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.026 0.974 29 H 0.335 0.665 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 -13.730 0.574 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.151 4.151 3 Si 0.719 3.281 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.529 4.529 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.009 4.009 11 H 0.082 0.918 12 N -0.355 5.355 13 C -0.145 4.145 14 C -0.152 4.152 15 C -0.070 4.070 16 N -0.321 5.321 17 C -0.071 4.071 18 C -0.150 4.150 19 H 0.066 0.934 20 H 0.033 0.967 21 H 0.036 0.964 22 H 0.146 0.854 23 H 0.129 0.871 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.152 0.848 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.858 -12.513 0.789 12.675 hybrid contribution -0.638 -0.358 -0.651 0.979 sum 1.220 -12.872 0.138 12.930 Atomic orbital electron populations 1.69970 1.05979 1.26183 1.52479 1.25026 0.94803 0.99126 0.96118 0.86612 0.79951 0.83732 0.77791 1.21041 1.21567 1.19900 1.21223 0.93374 0.90369 1.47959 0.92150 1.19154 0.93196 0.91431 0.96900 1.21624 0.95099 0.92635 0.91530 0.91774 1.58861 1.18118 1.54042 1.04431 1.22077 0.97030 0.96943 0.98470 1.21674 0.98016 0.93750 1.01795 1.21908 0.95536 0.98486 0.91053 1.60307 1.22419 1.05776 1.43644 1.21973 0.93192 0.92184 0.99786 1.21656 0.99070 0.95504 0.98775 0.93388 0.96699 0.96384 0.85395 0.87083 0.91847 0.91518 0.91956 0.91431 0.95580 0.84766 0.95496 0.91209 0.91673 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.69 13.29 55.43 0.74 -26.96 16 2 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 3 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.49 -14.14 8.84 -34.44 -0.30 -14.45 16 8 H 0.06 1.75 7.74 -52.48 -0.41 1.35 16 9 C 0.03 0.78 4.13 -27.88 -0.12 0.66 16 10 C 0.10 2.09 2.57 -67.72 -0.17 1.91 16 11 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 12 N -0.83 -15.75 8.77 -4.67 -0.04 -15.79 16 13 C -0.12 -2.09 2.14 -90.50 -0.19 -2.28 16 14 C -0.11 -1.60 5.10 -26.65 -0.14 -1.74 16 15 C 0.06 0.73 6.55 -3.83 -0.03 0.71 16 16 N -0.69 -8.55 6.85 -113.81 -0.78 -9.33 16 17 C 0.06 0.78 6.55 -3.83 -0.03 0.76 16 18 C -0.11 -1.81 4.68 -26.65 -0.12 -1.94 16 19 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 20 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 21 H 0.02 0.49 6.77 -51.93 -0.35 0.13 16 22 H 0.33 6.22 7.11 -39.29 -0.28 5.94 16 23 H 0.32 5.19 7.35 -39.29 -0.29 4.90 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.07 0.94 6.65 -51.93 -0.35 0.60 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.34 3.39 8.90 -39.29 -0.35 3.04 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.06 6.55 -51.93 -0.34 0.72 16 33 H 0.08 1.42 6.70 -51.93 -0.35 1.07 16 LS Contribution 256.99 15.07 3.87 3.87 Total: -1.00 -30.60 256.99 -7.65 -38.25 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.23 Total: 7.51 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -1.20 Total: -15.04 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.08 Total: -52.08 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.60 -7.65 -38.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260506374.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.104 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds