Wall clock time and date at job start Mon Mar 30 2020 02:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00213 * 2 1 4 4 H 1.48502 * 109.47217 * 270.00481 * 3 2 1 5 5 H 1.48497 * 109.46760 * 30.00310 * 3 2 1 6 6 H 1.48493 * 109.46877 * 150.00332 * 3 2 1 7 7 C 1.37875 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00181 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00399 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47601 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46826 * 305.00312 * 10 9 7 12 12 N 1.46903 * 109.47193 * 64.99729 * 10 9 7 13 13 C 1.52996 * 109.47318 * 185.00182 * 10 9 7 14 14 C 1.53118 * 109.52328 * 180.02562 * 13 10 9 15 15 C 1.53034 * 109.28068 * 177.55504 * 14 13 10 16 16 N 1.46848 * 109.52504 * 300.82023 * 15 14 13 17 17 C 1.46847 * 111.19556 * 61.74015 * 16 15 14 18 18 C 1.53044 * 109.52516 * 298.25761 * 17 16 15 19 19 H 0.97001 * 119.99614 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.46725 * 59.99918 * 9 7 2 21 21 H 1.09004 * 109.46681 * 300.00106 * 9 7 2 22 22 H 1.00897 * 110.99537 * 60.00080 * 12 10 9 23 23 H 1.00898 * 110.99875 * 183.95642 * 12 10 9 24 24 H 1.08992 * 109.52755 * 59.87207 * 13 10 9 25 25 H 1.09001 * 109.50624 * 57.61525 * 14 13 10 26 26 H 1.09002 * 109.53418 * 297.51720 * 14 13 10 27 27 H 1.09000 * 109.46341 * 180.80474 * 15 14 13 28 28 H 1.08999 * 109.46274 * 60.83372 * 15 14 13 29 29 H 1.00901 * 111.00066 * 185.83397 * 16 15 14 30 30 H 1.08999 * 109.46628 * 58.27319 * 17 16 15 31 31 H 1.09003 * 109.46158 * 178.24166 * 17 16 15 32 32 H 1.08996 * 109.50067 * 299.23984 * 18 17 16 33 33 H 1.08999 * 109.53710 * 179.14269 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9294 -3.5552 -0.8423 12 7 3.0084 -3.6540 1.2547 13 6 1.4844 -4.9835 -0.1263 14 6 2.4783 -6.1483 -0.1258 15 6 1.7085 -7.4694 -0.1903 16 7 0.8086 -7.5700 0.9657 17 6 -0.1850 -6.4887 0.9608 18 6 0.5282 -5.1382 1.0597 19 1 -0.4849 0.8401 -0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.3961 -3.7517 2.0507 23 1 3.7160 -4.3732 1.2523 24 1 0.9161 -4.9896 -1.0563 25 1 3.0737 -6.1183 0.7867 26 1 3.1352 -6.0672 -0.9918 27 1 2.4128 -8.3012 -0.1756 28 1 1.1241 -7.5047 -1.1096 29 1 0.3598 -8.4732 0.9972 30 1 -0.7605 -6.5285 0.0360 31 1 -0.8561 -6.6081 1.8114 32 1 1.0929 -5.0923 1.9908 33 1 -0.2081 -4.3348 1.0406 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260506374.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:07 Heat of formation + Delta-G solvation = -42.405313 kcal Electronic energy + Delta-G solvation = -13141.339268 eV Core-core repulsion = 11006.725129 eV Total energy + Delta-G solvation = -2134.614139 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.21079 -36.81938 -34.60661 -31.81396 -31.56201 -30.19095 -26.59268 -24.49611 -23.70401 -21.53084 -19.97680 -18.44267 -17.49778 -16.81553 -16.39113 -15.58229 -15.46028 -15.14374 -14.61399 -14.43633 -14.06009 -13.84127 -13.18739 -13.05605 -12.75970 -12.44530 -12.22197 -12.07460 -11.87684 -11.68827 -11.30817 -11.06972 -10.81052 -10.48824 -9.41172 -9.20519 -8.11355 -6.16912 1.40946 1.42295 1.54266 2.46819 3.21374 3.30503 3.84304 3.87303 3.93069 4.08450 4.28025 4.45653 4.49563 4.68442 4.70070 4.73957 4.90773 4.91258 5.04684 5.13294 5.22424 5.31957 5.45355 5.50211 5.75485 5.89349 6.04849 6.35747 6.54221 6.61510 6.90927 6.97954 7.49460 9.00358 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.067643 B = 0.008092 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.840914 B = 3459.494971 C = 3673.915697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.960 3.040 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.038 3.962 10 C 0.114 3.886 11 H 0.055 0.945 12 N -0.833 5.833 13 C -0.117 4.117 14 C -0.109 4.109 15 C 0.061 3.939 16 N -0.691 5.691 17 C 0.064 3.936 18 C -0.109 4.109 19 H 0.259 0.741 20 H -0.014 1.014 21 H -0.003 1.003 22 H 0.335 0.665 23 H 0.337 0.663 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.027 0.973 29 H 0.353 0.647 30 H 0.025 0.975 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 -14.825 0.802 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.204 4.204 3 Si 0.786 3.214 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.001 3.999 10 C 0.002 3.998 11 H 0.073 0.927 12 N -0.364 5.364 13 C -0.137 4.137 14 C -0.146 4.146 15 C -0.068 4.068 16 N -0.324 5.324 17 C -0.066 4.066 18 C -0.147 4.147 19 H 0.068 0.932 20 H 0.004 0.996 21 H 0.015 0.985 22 H 0.149 0.851 23 H 0.151 0.849 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.045 0.955 29 H 0.172 0.828 30 H 0.043 0.957 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.997 -13.641 1.016 14.003 hybrid contribution -0.998 -0.023 -0.718 1.230 sum 1.999 -13.663 0.298 13.812 Atomic orbital electron populations 1.70100 1.07549 1.27198 1.53304 1.25911 0.95713 1.03004 0.95729 0.85520 0.78647 0.79097 0.78177 1.20073 1.21041 1.19238 1.21576 0.93371 0.91919 1.47749 0.92558 1.18994 0.93562 0.92934 0.94409 1.21275 0.94043 0.92559 0.91916 0.92668 1.58723 1.18518 1.55350 1.03793 1.21911 0.97410 0.96297 0.98122 1.21622 0.97401 0.93308 1.02318 1.21921 0.95814 0.98060 0.91024 1.60255 1.22177 1.06256 1.43709 1.21853 0.93283 0.91052 1.00371 1.21567 0.98363 0.96430 0.98378 0.93239 0.99607 0.98479 0.85148 0.84897 0.93137 0.91247 0.91134 0.88927 0.95513 0.82822 0.95660 0.89859 0.91726 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.64 13.29 21.45 0.28 -58.36 16 2 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 3 Si 0.96 46.39 29.54 68.60 2.03 48.42 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.51 -29.78 8.84 25.60 0.23 -29.55 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.04 2.03 4.13 29.85 0.12 2.16 16 10 C 0.11 4.67 2.57 44.91 0.12 4.79 16 11 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 12 N -0.83 -31.29 8.77 -168.68 -1.48 -32.77 16 13 C -0.12 -3.88 2.14 -10.72 -0.02 -3.90 16 14 C -0.11 -2.80 5.10 30.65 0.16 -2.65 16 15 C 0.06 1.31 6.55 86.32 0.57 1.88 16 16 N -0.69 -15.16 6.85 -513.99 -3.52 -18.68 16 17 C 0.06 1.63 6.55 86.33 0.57 2.20 16 18 C -0.11 -3.53 4.68 30.65 0.14 -3.39 16 19 H 0.26 15.28 8.31 -92.71 -0.77 14.50 16 20 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 21 H 0.00 -0.17 6.77 -2.38 -0.02 -0.19 16 22 H 0.33 12.41 7.11 -89.70 -0.64 11.77 16 23 H 0.34 10.46 7.35 -89.70 -0.66 9.80 16 24 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 1.77 6.65 -2.39 -0.02 1.76 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.35 5.95 8.90 -89.69 -0.80 5.15 16 30 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 2.07 6.55 -2.39 -0.02 2.06 16 33 H 0.05 1.79 6.70 -2.39 -0.02 1.77 16 Total: -1.00 -65.72 256.99 -1.34 -67.06 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -0.99 Total: 22.78 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 2.33 Total: -28.46 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -4.71 Total: -109.81 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -65.72 -1.34 -67.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260506374.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.657 kcal (2) G-P(sol) polarization free energy of solvation -65.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds