Wall clock time and date at job start Mon Mar 30 2020 02:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47337 * 2 1 4 4 H 1.08998 * 109.46853 * 179.02701 * 3 2 1 5 5 C 1.50699 * 109.47466 * 59.02168 * 3 2 1 6 6 H 1.08002 * 120.00457 * 240.00540 * 5 3 2 7 7 C 1.37881 * 119.99765 * 59.99822 * 5 3 2 8 8 N 1.31511 * 120.00021 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 119.99989 * 359.72820 * 7 5 3 10 10 H 1.48494 * 109.47035 * 270.27517 * 9 7 5 11 11 H 1.48505 * 109.47087 * 30.27277 * 9 7 5 12 12 H 1.48496 * 109.47265 * 150.27128 * 9 7 5 13 13 C 1.53001 * 109.46734 * 299.02476 * 3 2 1 14 14 H 1.08996 * 109.52525 * 61.11285 * 13 3 2 15 15 C 1.53177 * 109.52498 * 300.98722 * 13 3 2 16 16 C 1.53179 * 109.03549 * 183.18208 * 15 13 3 17 17 C 1.53094 * 109.21778 * 56.88292 * 16 15 13 18 18 O 1.42904 * 109.41207 * 302.42713 * 17 16 15 19 19 C 1.42902 * 114.09654 * 61.16065 * 18 17 16 20 20 H 1.09005 * 109.47366 * 304.65412 * 1 2 3 21 21 H 1.09009 * 109.46873 * 64.65099 * 1 2 3 22 22 H 1.08996 * 109.47195 * 184.65212 * 1 2 3 23 23 H 1.08996 * 109.46682 * 239.99481 * 2 1 3 24 24 H 1.08998 * 109.46557 * 119.99915 * 2 1 3 25 25 H 0.96999 * 120.00355 * 179.72794 * 8 7 5 26 26 H 1.09000 * 109.53968 * 302.98578 * 15 13 3 27 27 H 1.08997 * 109.54207 * 63.24430 * 15 13 3 28 28 H 1.09008 * 109.46552 * 296.97762 * 16 15 13 29 29 H 1.08996 * 109.58006 * 176.85673 * 16 15 13 30 30 H 1.09001 * 109.48134 * 182.44986 * 17 16 15 31 31 H 1.09001 * 109.48688 * 62.41574 * 17 16 15 32 32 H 1.09001 * 109.48266 * 178.85808 * 19 18 17 33 33 H 1.08995 * 109.49639 * 58.82529 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1299 1.4424 0.0175 5 6 1.5181 2.1599 1.2181 6 1 0.8989 3.0374 1.1041 7 6 1.8310 1.6960 2.4783 8 7 1.3751 2.3218 3.5413 9 14 2.8956 0.1737 2.6755 10 1 2.0315 -1.0335 2.7100 11 1 3.8368 0.0762 1.5309 12 1 3.6648 0.2683 3.9422 13 6 1.5502 2.1565 -1.2614 14 1 0.4604 2.1743 -1.2699 15 6 2.0597 1.4140 -2.5005 16 6 1.6304 2.1818 -3.7546 17 6 2.1626 3.6150 -3.6748 18 8 1.6748 4.2372 -2.4844 19 6 2.0855 3.5908 -1.2779 20 1 -0.3634 0.5844 0.8454 21 1 -0.3633 0.4400 -0.9288 22 1 -0.3633 -1.0242 0.0833 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.5919 1.9931 4.4278 26 1 3.1474 1.3517 -2.4667 27 1 1.6362 0.4099 -2.5237 28 1 0.5422 2.2001 -3.8146 29 1 2.0358 1.6915 -4.6396 30 1 1.8230 4.1778 -4.5443 31 1 3.2523 3.5978 -3.6558 32 1 1.6905 4.1360 -0.4207 33 1 3.1742 3.5730 -1.2271 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260523952.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:22 Heat of formation + Delta-G solvation = -68.047578 kcal Electronic energy + Delta-G solvation = -13577.863970 eV Core-core repulsion = 11409.845148 eV Total energy + Delta-G solvation = -2168.018822 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.03559 -35.89261 -32.68456 -31.62007 -30.25696 -26.94456 -24.52007 -23.64110 -22.33431 -20.32997 -18.59070 -16.45800 -15.78153 -15.46315 -14.80727 -14.33737 -13.79857 -13.26685 -13.16744 -12.66374 -12.55019 -12.08949 -11.80645 -11.31566 -10.91841 -10.79028 -10.67783 -10.49369 -10.29135 -9.81801 -9.77128 -9.65564 -9.04348 -8.95917 -8.66164 -8.47732 -6.05222 -4.02952 3.28573 3.38797 3.40639 4.40282 4.44192 5.19656 5.27324 5.27812 5.35035 5.62777 5.67180 5.88224 5.98847 6.05254 6.12548 6.18498 6.26308 6.30610 6.39289 6.48255 6.65879 6.70491 6.83441 6.90339 7.04725 7.22845 7.31103 7.50543 7.75829 7.81223 8.54249 8.98611 9.58050 11.07678 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044844 B = 0.012145 C = 0.010939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.236364 B = 2304.944292 C = 2558.919826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.018 3.982 4 H 0.024 0.976 5 C -0.506 4.506 6 H 0.076 0.924 7 C 0.071 3.929 8 N -0.901 5.901 9 Si 0.885 3.115 10 H -0.280 1.280 11 H -0.268 1.268 12 H -0.300 1.300 13 C -0.100 4.100 14 H 0.074 0.926 15 C -0.122 4.122 16 C -0.154 4.154 17 C 0.062 3.938 18 O -0.392 6.392 19 C 0.071 3.929 20 H 0.074 0.926 21 H 0.043 0.957 22 H 0.027 0.973 23 H 0.036 0.964 24 H 0.042 0.958 25 H 0.262 0.738 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.107 0.893 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.680 -2.150 -11.453 11.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C -0.001 4.001 4 H 0.042 0.958 5 C -0.544 4.544 6 H 0.094 0.906 7 C -0.130 4.130 8 N -0.540 5.540 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.193 1.193 12 H -0.228 1.228 13 C -0.118 4.118 14 H 0.092 0.908 15 C -0.160 4.160 16 C -0.192 4.192 17 C -0.016 4.016 18 O -0.311 6.311 19 C -0.004 4.004 20 H 0.093 0.907 21 H 0.062 0.938 22 H 0.046 0.954 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.125 0.875 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.561 -1.976 -11.253 11.531 hybrid contribution 0.751 -1.265 0.295 1.500 sum 2.312 -3.241 -10.958 11.659 Atomic orbital electron populations 1.21677 0.96251 0.99205 1.02369 1.21851 0.96560 0.99217 0.98418 1.19177 0.95929 0.91497 0.93499 0.95756 1.21003 1.31899 1.12975 0.88547 0.90585 1.24985 0.95422 0.96626 0.96009 1.69896 1.45590 1.40435 0.98036 0.86884 0.80987 0.83894 0.76633 1.20699 1.19318 1.22772 1.21644 1.00985 0.94707 0.94492 0.90774 1.21766 1.00454 0.99259 0.94481 1.22191 1.01727 0.96744 0.98555 1.22452 0.97436 0.93207 0.88463 1.87899 1.75305 1.53661 1.14253 1.22743 0.98073 0.93820 0.85812 0.90683 0.93793 0.95429 0.94529 0.94014 0.92768 0.92604 0.91681 0.91487 0.91969 0.89995 0.93935 0.87535 0.94071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.28 37.16 0.34 -2.43 16 2 C -0.12 -2.62 4.84 -26.73 -0.13 -2.75 16 3 C 0.02 0.40 1.27 -91.77 -0.12 0.29 16 4 H 0.02 0.57 7.21 -51.93 -0.37 0.20 16 5 C -0.51 -13.53 7.06 -34.44 -0.24 -13.77 16 6 H 0.08 2.20 7.04 -52.49 -0.37 1.83 16 7 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 8 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 9 Si 0.88 21.93 24.36 -169.99 -4.14 17.79 16 10 H -0.28 -6.82 6.87 56.52 0.39 -6.43 16 11 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 12 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 13 C -0.10 -1.95 1.57 -90.48 -0.14 -2.09 16 14 H 0.07 1.52 6.62 -51.93 -0.34 1.18 16 15 C -0.12 -1.99 4.84 -26.55 -0.13 -2.12 16 16 C -0.15 -2.16 6.13 -26.59 -0.16 -2.33 16 17 C 0.06 0.89 6.84 37.21 0.25 1.15 16 18 O -0.39 -7.19 10.77 -35.23 -0.38 -7.57 16 19 C 0.07 1.39 5.84 37.21 0.22 1.61 16 20 H 0.07 1.71 7.02 -51.93 -0.36 1.35 16 21 H 0.04 0.81 6.73 -51.92 -0.35 0.46 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.04 0.69 6.43 -51.93 -0.33 0.35 16 24 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 1.03 6.58 -51.93 -0.34 0.69 16 28 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.11 2.27 6.79 -51.93 -0.35 1.92 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 245.73 15.07 3.70 3.70 Total: -1.00 -28.76 245.73 -5.39 -34.14 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.14 Total: -1.17 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -0.20 Total: -20.55 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.77 Total: -26.34 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.38 Total: -7.57 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.14 Total: 17.79 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.76 -5.39 -34.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523952.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.904 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds