Wall clock time and date at job start Mon Mar 30 2020 02:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47337 * 2 1 4 4 H 1.08998 * 109.46853 * 179.02701 * 3 2 1 5 5 C 1.50699 * 109.47466 * 59.02168 * 3 2 1 6 6 H 1.08002 * 120.00457 * 240.00540 * 5 3 2 7 7 C 1.37881 * 119.99765 * 59.99822 * 5 3 2 8 8 N 1.31511 * 120.00021 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 119.99989 * 359.72820 * 7 5 3 10 10 H 1.48494 * 109.47035 * 270.27517 * 9 7 5 11 11 H 1.48505 * 109.47087 * 30.27277 * 9 7 5 12 12 H 1.48496 * 109.47265 * 150.27128 * 9 7 5 13 13 C 1.53001 * 109.46734 * 299.02476 * 3 2 1 14 14 H 1.08996 * 109.52525 * 61.11285 * 13 3 2 15 15 C 1.53177 * 109.52498 * 300.98722 * 13 3 2 16 16 C 1.53179 * 109.03549 * 183.18208 * 15 13 3 17 17 C 1.53094 * 109.21778 * 56.88292 * 16 15 13 18 18 O 1.42904 * 109.41207 * 302.42713 * 17 16 15 19 19 C 1.42902 * 114.09654 * 61.16065 * 18 17 16 20 20 H 1.09005 * 109.47366 * 304.65412 * 1 2 3 21 21 H 1.09009 * 109.46873 * 64.65099 * 1 2 3 22 22 H 1.08996 * 109.47195 * 184.65212 * 1 2 3 23 23 H 1.08996 * 109.46682 * 239.99481 * 2 1 3 24 24 H 1.08998 * 109.46557 * 119.99915 * 2 1 3 25 25 H 0.96999 * 120.00355 * 179.72794 * 8 7 5 26 26 H 1.09000 * 109.53968 * 302.98578 * 15 13 3 27 27 H 1.08997 * 109.54207 * 63.24430 * 15 13 3 28 28 H 1.09008 * 109.46552 * 296.97762 * 16 15 13 29 29 H 1.08996 * 109.58006 * 176.85673 * 16 15 13 30 30 H 1.09001 * 109.48134 * 182.44986 * 17 16 15 31 31 H 1.09001 * 109.48688 * 62.41574 * 17 16 15 32 32 H 1.09001 * 109.48266 * 178.85808 * 19 18 17 33 33 H 1.08995 * 109.49639 * 58.82529 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1299 1.4424 0.0175 5 6 1.5181 2.1599 1.2181 6 1 0.8989 3.0374 1.1041 7 6 1.8310 1.6960 2.4783 8 7 1.3751 2.3218 3.5413 9 14 2.8956 0.1737 2.6755 10 1 2.0315 -1.0335 2.7100 11 1 3.8368 0.0762 1.5309 12 1 3.6648 0.2683 3.9422 13 6 1.5502 2.1565 -1.2614 14 1 0.4604 2.1743 -1.2699 15 6 2.0597 1.4140 -2.5005 16 6 1.6304 2.1818 -3.7546 17 6 2.1626 3.6150 -3.6748 18 8 1.6748 4.2372 -2.4844 19 6 2.0855 3.5908 -1.2779 20 1 -0.3634 0.5844 0.8454 21 1 -0.3633 0.4400 -0.9288 22 1 -0.3633 -1.0242 0.0833 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.5919 1.9931 4.4278 26 1 3.1474 1.3517 -2.4667 27 1 1.6362 0.4099 -2.5237 28 1 0.5422 2.2001 -3.8146 29 1 2.0358 1.6915 -4.6396 30 1 1.8230 4.1778 -4.5443 31 1 3.2523 3.5978 -3.6558 32 1 1.6905 4.1360 -0.4207 33 1 3.1742 3.5730 -1.2271 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260523952.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:22 Heat of formation + Delta-G solvation = -86.728860 kcal Electronic energy + Delta-G solvation = -13578.674051 eV Core-core repulsion = 11409.845148 eV Total energy + Delta-G solvation = -2168.828903 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.47339 -37.54824 -34.37977 -33.34786 -31.75454 -28.74993 -25.99235 -25.32924 -23.89354 -21.78844 -20.23206 -18.46034 -17.30155 -16.87942 -16.59499 -15.78535 -15.16026 -14.99723 -14.73831 -14.52852 -14.19111 -13.49674 -13.36407 -12.94743 -12.62945 -12.41807 -12.20228 -12.04312 -11.92973 -11.47929 -11.38842 -11.28875 -10.81274 -10.69877 -10.59687 -10.14592 -8.23250 -6.23549 1.31812 1.36377 1.46129 2.36110 3.05046 3.16767 3.98214 4.01662 4.09170 4.17658 4.31412 4.47135 4.49334 4.64941 4.66972 4.77773 4.92255 4.95445 5.00540 5.06938 5.10414 5.18613 5.30733 5.33427 5.44155 5.57965 5.60650 5.75144 5.82152 6.36976 6.41972 6.82240 7.40229 8.93472 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044844 B = 0.012145 C = 0.010939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.236364 B = 2304.944292 C = 2558.919826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 C 0.017 3.983 4 H 0.021 0.979 5 C -0.495 4.495 6 H 0.036 0.964 7 C 0.012 3.988 8 N -0.953 5.953 9 Si 0.942 3.058 10 H -0.271 1.271 11 H -0.247 1.247 12 H -0.306 1.306 13 C -0.095 4.095 14 H 0.059 0.941 15 C -0.119 4.119 16 C -0.148 4.148 17 C 0.050 3.950 18 O -0.410 6.410 19 C 0.078 3.922 20 H 0.036 0.964 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.072 0.928 24 H 0.028 0.972 25 H 0.262 0.738 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.640 -3.988 -14.133 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.162 4.162 3 C -0.002 4.002 4 H 0.039 0.961 5 C -0.534 4.534 6 H 0.054 0.946 7 C -0.184 4.184 8 N -0.594 5.594 9 Si 0.771 3.229 10 H -0.197 1.197 11 H -0.171 1.171 12 H -0.234 1.234 13 C -0.114 4.114 14 H 0.077 0.923 15 C -0.156 4.156 16 C -0.186 4.186 17 C -0.026 4.026 18 O -0.329 6.329 19 C 0.001 3.999 20 H 0.055 0.945 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.091 0.909 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.522 -3.819 -13.971 14.701 hybrid contribution 0.400 -0.584 1.054 1.270 sum 2.922 -4.403 -12.916 13.955 Atomic orbital electron populations 1.21603 0.95705 1.00182 1.01548 1.21842 0.97102 0.97825 0.99422 1.19155 0.95469 0.92636 0.92934 0.96085 1.21255 1.30090 1.11591 0.90422 0.94565 1.25774 0.97083 0.99761 0.95754 1.70052 1.48066 1.42699 0.98590 0.85939 0.79677 0.80460 0.76840 1.19706 1.17100 1.23429 1.21524 1.00031 0.94781 0.95025 0.92291 1.21738 1.00856 0.99512 0.93499 1.22165 1.01725 0.96076 0.98611 1.22809 0.98325 0.94008 0.87431 1.87870 1.75792 1.54342 1.14920 1.22468 0.97931 0.93617 0.85848 0.94507 0.92199 0.92979 0.90929 0.95373 0.92948 0.91868 0.90551 0.91753 0.88523 0.87329 0.92799 0.91018 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 9.28 71.98 0.67 -4.45 16 2 C -0.12 -4.97 4.84 30.59 0.15 -4.82 16 3 C 0.02 0.75 1.27 -11.54 -0.01 0.73 16 4 H 0.02 0.95 7.21 -2.39 -0.02 0.93 16 5 C -0.50 -27.25 7.06 25.60 0.18 -27.07 16 6 H 0.04 2.23 7.04 -2.91 -0.02 2.21 16 7 C 0.01 0.72 5.45 84.66 0.46 1.18 16 8 N -0.95 -59.65 13.96 21.45 0.30 -59.36 16 9 Si 0.94 45.10 24.36 68.60 1.67 46.77 16 10 H -0.27 -12.46 6.87 99.48 0.68 -11.77 16 11 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 12 H -0.31 -14.83 7.11 99.48 0.71 -14.12 16 13 C -0.09 -3.60 1.57 -10.70 -0.02 -3.61 16 14 H 0.06 2.40 6.62 -2.39 -0.02 2.38 16 15 C -0.12 -3.43 4.84 30.71 0.15 -3.28 16 16 C -0.15 -3.52 6.13 30.69 0.19 -3.34 16 17 C 0.05 1.29 6.84 72.01 0.49 1.79 16 18 O -0.41 -14.57 10.77 -148.98 -1.60 -16.17 16 19 C 0.08 3.04 5.84 72.02 0.42 3.46 16 20 H 0.04 1.67 7.02 -2.38 -0.02 1.66 16 21 H 0.06 2.07 6.73 -2.38 -0.02 2.06 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 23 H 0.07 2.40 6.43 -2.39 -0.02 2.38 16 24 H 0.03 1.20 3.27 -2.39 -0.01 1.20 16 25 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 27 H 0.08 2.05 6.58 -2.39 -0.02 2.03 16 28 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 3.24 6.79 -2.39 -0.02 3.23 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -63.68 245.73 4.04 -59.64 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.99 Total: 8.53 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: 2.68 Total: -39.41 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.30 Total: -59.36 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -1.60 Total: -16.17 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.67 Total: 46.77 kcal Total: -63.68 4.04 -59.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523952.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.088 kcal (2) G-P(sol) polarization free energy of solvation -63.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds