Wall clock time and date at job start Mon Mar 30 2020 02:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47068 * 2 1 4 4 H 1.09003 * 109.46856 * 305.22030 * 3 2 1 5 5 C 1.50706 * 109.47077 * 65.22125 * 3 2 1 6 6 H 1.07996 * 120.00209 * 56.13972 * 5 3 2 7 7 C 1.37884 * 119.99500 * 236.13968 * 5 3 2 8 8 N 1.31508 * 120.00353 * 5.87725 * 7 5 3 9 9 Si 1.86799 * 119.99515 * 185.87562 * 7 5 3 10 10 H 1.48496 * 109.47530 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47193 * 120.00120 * 9 7 5 12 12 H 1.48507 * 109.47019 * 240.00163 * 9 7 5 13 13 C 1.53002 * 109.46935 * 185.21979 * 3 2 1 14 14 H 1.09000 * 109.57006 * 300.15382 * 13 3 2 15 15 C 1.53177 * 109.51919 * 60.31479 * 13 3 2 16 16 C 1.53185 * 109.03211 * 176.88471 * 15 13 3 17 17 C 1.53087 * 109.16421 * 303.02134 * 16 15 13 18 18 O 1.42901 * 109.41844 * 57.60796 * 17 16 15 19 19 C 1.42901 * 114.09654 * 298.84183 * 18 17 16 20 20 H 1.09001 * 109.47378 * 294.26057 * 1 2 3 21 21 H 1.09008 * 109.46603 * 54.25361 * 1 2 3 22 22 H 1.08994 * 109.47464 * 174.25052 * 1 2 3 23 23 H 1.08999 * 109.47073 * 239.99888 * 2 1 3 24 24 H 1.09000 * 109.46754 * 119.99774 * 2 1 3 25 25 H 0.96998 * 120.00418 * 180.02562 * 8 7 5 26 26 H 1.08992 * 109.54595 * 296.74732 * 15 13 3 27 27 H 1.09000 * 109.54371 * 57.02360 * 15 13 3 28 28 H 1.08997 * 109.52005 * 183.11170 * 16 15 13 29 29 H 1.09000 * 109.51758 * 62.92560 * 16 15 13 30 30 H 1.09007 * 109.48104 * 297.62495 * 17 16 15 31 31 H 1.09000 * 109.49005 * 177.60043 * 17 16 15 32 32 H 1.09005 * 109.48407 * 301.17481 * 19 18 17 33 33 H 1.09000 * 109.48163 * 181.14020 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9826 -0.8396 5 6 1.6460 2.1146 1.2901 6 1 1.9373 1.6815 2.2355 7 6 0.9137 3.2826 1.2631 8 7 0.4603 3.7483 0.1199 9 14 0.5656 4.2034 2.8507 10 1 1.1808 3.4761 3.9899 11 1 1.1407 5.5699 2.7667 12 1 -0.9021 4.2958 3.0578 13 6 3.5644 1.4445 -0.1312 14 1 4.0037 0.9023 0.7062 15 6 3.9658 0.7685 -1.4459 16 6 5.4876 0.8457 -1.6030 17 6 5.9249 2.3117 -1.5462 18 8 5.4936 2.8887 -0.3121 19 6 4.0760 2.8874 -0.1314 20 1 -0.3634 0.4223 0.9369 21 1 -0.3633 0.6004 -0.8342 22 1 -0.3634 -1.0224 -0.1029 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 -0.0546 4.5701 0.1009 26 1 3.6536 -0.2756 -1.4292 27 1 3.4867 1.2806 -2.2803 28 1 5.7770 0.4161 -2.5620 29 1 5.9657 0.2915 -0.7953 30 1 5.4784 2.8567 -2.3780 31 1 7.0112 2.3701 -1.6148 32 1 3.6053 3.4399 -0.9446 33 1 3.8304 3.3603 0.8195 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260523962.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:23 Heat of formation + Delta-G solvation = -80.047941 kcal Electronic energy + Delta-G solvation = -13480.272968 eV Core-core repulsion = 11311.733771 eV Total energy + Delta-G solvation = -2168.539197 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.72342 -35.39057 -32.57249 -31.49529 -30.24356 -26.40479 -24.38039 -23.77962 -21.62734 -19.89705 -18.85953 -16.40295 -15.51203 -15.17767 -14.46597 -14.03877 -13.66577 -13.36889 -12.78071 -12.43816 -12.21486 -11.87123 -11.43431 -11.03757 -10.94211 -10.58720 -10.54214 -10.43063 -10.21127 -9.93617 -9.72153 -9.41758 -8.89584 -8.78375 -8.61497 -8.31063 -6.00536 -4.00411 3.29665 3.39075 3.43167 4.44592 4.62464 5.27012 5.37154 5.45300 5.56673 5.84617 5.89280 6.11480 6.17989 6.28052 6.33191 6.43144 6.51844 6.54817 6.60379 6.70031 6.91454 7.07611 7.17091 7.20898 7.28476 7.42126 7.62213 7.86837 7.96089 8.02948 8.49068 9.10570 9.60960 11.08071 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032876 B = 0.013427 C = 0.010463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.489387 B = 2084.922446 C = 2675.519930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.109 4.109 3 C 0.033 3.967 4 H 0.068 0.932 5 C -0.504 4.504 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.892 5.892 9 Si 0.880 3.120 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.286 1.286 13 C -0.105 4.105 14 H 0.055 0.945 15 C -0.121 4.121 16 C -0.154 4.154 17 C 0.063 3.937 18 O -0.398 6.398 19 C 0.080 3.920 20 H 0.058 0.942 21 H 0.046 0.954 22 H 0.020 0.980 23 H 0.029 0.971 24 H 0.037 0.963 25 H 0.259 0.741 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.663 -3.873 -3.169 7.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.146 4.146 3 C 0.014 3.986 4 H 0.087 0.913 5 C -0.542 4.542 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.530 5.530 9 Si 0.708 3.292 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.212 1.212 13 C -0.125 4.125 14 H 0.074 0.926 15 C -0.158 4.158 16 C -0.192 4.192 17 C -0.014 4.014 18 O -0.317 6.317 19 C 0.005 3.995 20 H 0.077 0.923 21 H 0.065 0.935 22 H 0.040 0.960 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.672 -3.638 -3.104 7.419 hybrid contribution -0.478 0.424 0.642 0.905 sum 5.195 -3.214 -2.462 6.586 Atomic orbital electron populations 1.21525 0.96899 0.97652 1.02492 1.21615 0.95443 0.99581 0.97990 1.19007 0.88441 0.91823 0.99309 0.91331 1.21080 1.33319 1.07418 0.92382 0.93012 1.24921 0.95323 0.97473 0.95659 1.69903 1.36557 1.21948 1.24638 0.86727 0.77926 0.80094 0.84462 1.19728 1.20954 1.21179 1.21872 1.00529 0.95222 0.94846 0.92612 1.21777 0.93706 1.00943 0.99383 1.22199 0.98144 0.97640 1.01231 1.22409 0.98712 0.92766 0.87558 1.87861 1.24899 1.81058 1.37913 1.22619 0.77606 0.96899 1.02414 0.92307 0.93495 0.96046 0.95252 0.94395 0.93065 0.92138 0.92534 0.92229 0.91779 0.94016 0.90329 0.93769 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.63 37.16 0.36 -2.35 16 2 C -0.11 -2.32 5.19 -26.73 -0.14 -2.46 16 3 C 0.03 0.78 1.70 -91.77 -0.16 0.63 16 4 H 0.07 1.82 6.92 -51.93 -0.36 1.46 16 5 C -0.50 -13.17 6.19 -34.43 -0.21 -13.39 16 6 H 0.05 1.38 7.82 -52.49 -0.41 0.97 16 7 C 0.07 1.81 5.45 -17.82 -0.10 1.71 16 8 N -0.89 -24.84 12.62 55.43 0.70 -24.14 16 9 Si 0.88 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C -0.11 -2.24 1.96 -90.48 -0.18 -2.42 16 14 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.12 -2.18 4.88 -26.54 -0.13 -2.31 16 16 C -0.15 -2.40 6.14 -26.59 -0.16 -2.57 16 17 C 0.06 1.02 6.84 37.20 0.25 1.28 16 18 O -0.40 -8.05 10.77 -35.23 -0.38 -8.43 16 19 C 0.08 1.76 5.83 37.21 0.22 1.97 16 20 H 0.06 1.33 7.58 -51.93 -0.39 0.94 16 21 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.03 0.57 6.25 -51.93 -0.32 0.24 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.06 1.04 6.51 -51.93 -0.34 0.70 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 2.41 7.31 -51.93 -0.38 2.03 16 LS Contribution 260.18 15.07 3.92 3.92 Total: -1.00 -27.10 260.18 -6.59 -33.69 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.57 Total: -1.10 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -0.25 Total: -19.90 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.70 Total: -24.14 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.38 Total: -8.43 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.10 -6.59 -33.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523962.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.354 kcal (2) G-P(sol) polarization free energy of solvation -27.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds