Wall clock time and date at job start Mon Mar 30 2020 02:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47068 * 2 1 4 4 H 1.09003 * 109.46856 * 305.22030 * 3 2 1 5 5 C 1.50706 * 109.47077 * 65.22125 * 3 2 1 6 6 H 1.07996 * 120.00209 * 56.13972 * 5 3 2 7 7 C 1.37884 * 119.99500 * 236.13968 * 5 3 2 8 8 N 1.31508 * 120.00353 * 5.87725 * 7 5 3 9 9 Si 1.86799 * 119.99515 * 185.87562 * 7 5 3 10 10 H 1.48496 * 109.47530 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47193 * 120.00120 * 9 7 5 12 12 H 1.48507 * 109.47019 * 240.00163 * 9 7 5 13 13 C 1.53002 * 109.46935 * 185.21979 * 3 2 1 14 14 H 1.09000 * 109.57006 * 300.15382 * 13 3 2 15 15 C 1.53177 * 109.51919 * 60.31479 * 13 3 2 16 16 C 1.53185 * 109.03211 * 176.88471 * 15 13 3 17 17 C 1.53087 * 109.16421 * 303.02134 * 16 15 13 18 18 O 1.42901 * 109.41844 * 57.60796 * 17 16 15 19 19 C 1.42901 * 114.09654 * 298.84183 * 18 17 16 20 20 H 1.09001 * 109.47378 * 294.26057 * 1 2 3 21 21 H 1.09008 * 109.46603 * 54.25361 * 1 2 3 22 22 H 1.08994 * 109.47464 * 174.25052 * 1 2 3 23 23 H 1.08999 * 109.47073 * 239.99888 * 2 1 3 24 24 H 1.09000 * 109.46754 * 119.99774 * 2 1 3 25 25 H 0.96998 * 120.00418 * 180.02562 * 8 7 5 26 26 H 1.08992 * 109.54595 * 296.74732 * 15 13 3 27 27 H 1.09000 * 109.54371 * 57.02360 * 15 13 3 28 28 H 1.08997 * 109.52005 * 183.11170 * 16 15 13 29 29 H 1.09000 * 109.51758 * 62.92560 * 16 15 13 30 30 H 1.09007 * 109.48104 * 297.62495 * 17 16 15 31 31 H 1.09000 * 109.49005 * 177.60043 * 17 16 15 32 32 H 1.09005 * 109.48407 * 301.17481 * 19 18 17 33 33 H 1.09000 * 109.48163 * 181.14020 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9826 -0.8396 5 6 1.6460 2.1146 1.2901 6 1 1.9373 1.6815 2.2355 7 6 0.9137 3.2826 1.2631 8 7 0.4603 3.7483 0.1199 9 14 0.5656 4.2034 2.8507 10 1 1.1808 3.4761 3.9899 11 1 1.1407 5.5699 2.7667 12 1 -0.9021 4.2958 3.0578 13 6 3.5644 1.4445 -0.1312 14 1 4.0037 0.9023 0.7062 15 6 3.9658 0.7685 -1.4459 16 6 5.4876 0.8457 -1.6030 17 6 5.9249 2.3117 -1.5462 18 8 5.4936 2.8887 -0.3121 19 6 4.0760 2.8874 -0.1314 20 1 -0.3634 0.4223 0.9369 21 1 -0.3633 0.6004 -0.8342 22 1 -0.3634 -1.0224 -0.1029 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 -0.0546 4.5701 0.1009 26 1 3.6536 -0.2756 -1.4292 27 1 3.4867 1.2806 -2.2803 28 1 5.7770 0.4161 -2.5620 29 1 5.9657 0.2915 -0.7953 30 1 5.4784 2.8567 -2.3780 31 1 7.0112 2.3701 -1.6148 32 1 3.6053 3.4399 -0.9446 33 1 3.8304 3.3603 0.8195 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260523962.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:23 Heat of formation + Delta-G solvation = -95.201425 kcal Electronic energy + Delta-G solvation = -13480.930072 eV Core-core repulsion = 11311.733771 eV Total energy + Delta-G solvation = -2169.196301 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.29538 -37.15112 -34.28180 -33.27814 -31.84608 -28.24825 -26.09446 -25.46150 -23.18627 -21.54675 -20.57741 -18.43402 -17.02091 -16.73804 -16.41429 -15.59410 -15.22887 -15.06135 -14.43111 -14.13409 -13.93670 -13.34605 -13.24766 -12.85624 -12.83341 -12.26512 -12.17563 -12.00853 -11.93570 -11.67401 -11.34859 -11.06541 -10.79882 -10.63701 -10.51580 -10.04497 -8.06799 -6.10452 1.37589 1.42520 1.51187 2.45341 3.12129 3.23356 4.04245 4.11543 4.15091 4.24169 4.49221 4.55660 4.63247 4.70206 4.80950 4.88253 4.98714 5.03848 5.08491 5.15429 5.25130 5.35389 5.46058 5.51403 5.54727 5.66482 5.74317 5.88504 6.01049 6.44775 6.49010 7.05755 7.52478 9.01424 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032876 B = 0.013427 C = 0.010463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.489387 B = 2084.922446 C = 2675.519930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 C 0.032 3.968 4 H 0.037 0.963 5 C -0.507 4.507 6 H 0.042 0.958 7 C 0.026 3.974 8 N -0.920 5.920 9 Si 0.930 3.070 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.284 1.284 13 C -0.101 4.101 14 H 0.049 0.951 15 C -0.117 4.117 16 C -0.147 4.147 17 C 0.051 3.949 18 O -0.412 6.412 19 C 0.092 3.908 20 H 0.034 0.966 21 H 0.030 0.970 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.040 0.960 25 H 0.258 0.742 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.111 0.889 32 H 0.025 0.975 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.790 -5.125 -3.584 9.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 C 0.013 3.987 4 H 0.055 0.945 5 C -0.545 4.545 6 H 0.060 0.940 7 C -0.173 4.173 8 N -0.560 5.560 9 Si 0.757 3.243 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.210 1.210 13 C -0.120 4.120 14 H 0.068 0.932 15 C -0.155 4.155 16 C -0.185 4.185 17 C -0.025 4.025 18 O -0.331 6.331 19 C 0.016 3.984 20 H 0.054 0.946 21 H 0.049 0.951 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.129 0.871 32 H 0.044 0.956 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.809 -4.901 -3.515 9.096 hybrid contribution -0.779 0.789 0.743 1.335 sum 6.030 -4.112 -2.772 7.807 Atomic orbital electron populations 1.21454 0.96811 0.99235 1.00494 1.21556 0.95524 0.98018 0.99225 1.18952 0.90135 0.92810 0.96805 0.94506 1.21297 1.32674 1.07545 0.93010 0.94004 1.25472 0.95573 0.98307 0.97908 1.70008 1.37573 1.22323 1.26132 0.85930 0.77670 0.78983 0.81699 1.19377 1.20899 1.20980 1.21730 0.98541 0.95022 0.96740 0.93233 1.21722 0.95894 1.01013 0.96849 1.22163 0.95792 0.97185 1.03313 1.22774 1.00652 0.93191 0.85881 1.87828 1.23274 1.81811 1.40212 1.22272 0.78902 0.97009 1.00209 0.94637 0.95097 0.92638 0.92849 0.94084 0.93246 0.90826 0.93174 0.88771 0.91373 0.93700 0.87066 0.95620 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 9.63 71.98 0.69 -4.37 16 2 C -0.11 -4.37 5.19 30.60 0.16 -4.22 16 3 C 0.03 1.52 1.70 -11.54 -0.02 1.50 16 4 H 0.04 1.99 6.92 -2.39 -0.02 1.98 16 5 C -0.51 -26.92 6.19 25.60 0.16 -26.76 16 6 H 0.04 2.26 7.82 -2.91 -0.02 2.24 16 7 C 0.03 1.41 5.45 84.66 0.46 1.87 16 8 N -0.92 -52.50 12.62 21.45 0.27 -52.23 16 9 Si 0.93 43.63 29.54 68.60 2.03 45.65 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 C -0.10 -4.25 1.96 -10.70 -0.02 -4.27 16 14 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 15 C -0.12 -3.98 4.88 30.72 0.15 -3.83 16 16 C -0.15 -4.06 6.14 30.69 0.19 -3.87 16 17 C 0.05 1.53 6.84 72.01 0.49 2.02 16 18 O -0.41 -16.25 10.77 -148.98 -1.60 -17.86 16 19 C 0.09 4.10 5.83 72.01 0.42 4.52 16 20 H 0.03 1.59 7.58 -2.39 -0.02 1.57 16 21 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 22 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.05 1.95 6.25 -2.39 -0.01 1.93 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.26 14.18 8.31 -92.71 -0.77 13.40 16 26 H 0.07 2.30 6.51 -2.39 -0.02 2.28 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.07 3.62 7.31 -2.39 -0.02 3.60 16 Total: -1.00 -58.22 260.18 4.43 -53.79 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 1.05 Total: 8.05 kcal Atomic # 6 Polarization: -40.09 SS G_CDS: 2.68 Total: -37.41 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.27 Total: -52.23 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -1.60 Total: -17.86 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -58.22 4.43 -53.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523962.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.410 kcal (2) G-P(sol) polarization free energy of solvation -58.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds