Wall clock time and date at job start Mon Mar 30 2020 02:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47131 * 2 1 4 4 H 1.08998 * 109.46737 * 179.18890 * 3 2 1 5 5 C 1.50701 * 109.46756 * 299.18772 * 3 2 1 6 6 H 1.08001 * 120.00051 * 114.36699 * 5 3 2 7 7 C 1.37874 * 120.00089 * 294.36624 * 5 3 2 8 8 N 1.31516 * 119.99959 * 351.09955 * 7 5 3 9 9 Si 1.86802 * 120.00125 * 171.09850 * 7 5 3 10 10 H 1.48497 * 109.47169 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47272 * 120.00060 * 9 7 5 12 12 H 1.48502 * 109.46999 * 240.00202 * 9 7 5 13 13 C 1.53000 * 109.46855 * 59.18422 * 3 2 1 14 14 H 1.08996 * 109.57971 * 299.84284 * 13 3 2 15 15 C 1.53183 * 109.51727 * 179.68585 * 13 3 2 16 16 C 1.53180 * 109.03469 * 183.11584 * 15 13 3 17 17 C 1.53091 * 109.16191 * 56.98013 * 16 15 13 18 18 O 1.42903 * 109.41936 * 302.39006 * 17 16 15 19 19 C 1.42909 * 114.09389 * 61.15701 * 18 17 16 20 20 H 1.08999 * 109.47122 * 62.25305 * 1 2 3 21 21 H 1.09006 * 109.47296 * 182.25292 * 1 2 3 22 22 H 1.08998 * 109.47285 * 302.25282 * 1 2 3 23 23 H 1.09002 * 109.47338 * 239.99993 * 2 1 3 24 24 H 1.08998 * 109.47503 * 119.99652 * 2 1 3 25 25 H 0.96999 * 120.00244 * 179.97438 * 8 7 5 26 26 H 1.08998 * 109.54330 * 302.98388 * 15 13 3 27 27 H 1.08997 * 109.54323 * 63.25301 * 15 13 3 28 28 H 1.08998 * 109.52383 * 176.88853 * 16 15 13 29 29 H 1.08999 * 109.52284 * 297.01541 * 16 15 13 30 30 H 1.09002 * 109.47929 * 182.40918 * 17 16 15 31 31 H 1.09001 * 109.48088 * 62.37657 * 17 16 15 32 32 H 1.09005 * 109.48053 * 58.82827 * 19 18 17 33 33 H 1.08993 * 109.47928 * 178.84550 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4425 0.0145 5 6 1.5541 2.1471 -1.2404 6 1 0.8592 2.9696 -1.1572 7 6 1.9968 1.7416 -2.4816 8 7 2.9703 0.8626 -2.5777 9 14 1.2138 2.4408 -4.0268 10 1 0.1488 3.4044 -3.6496 11 1 2.2475 3.1372 -4.8340 12 1 0.6229 1.3368 -4.8253 13 6 1.5133 2.1697 1.2389 14 1 0.4234 2.1731 1.2246 15 6 2.0296 3.6118 1.2440 16 6 1.5607 4.3058 2.5266 17 6 2.0517 3.5084 3.7377 18 8 1.5614 2.1687 3.6551 19 6 2.0062 1.4549 2.4997 20 1 -0.3633 0.4784 -0.9095 21 1 -0.3634 -1.0269 0.0404 22 1 -0.3634 0.5484 0.8691 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.2816 0.5771 -3.4509 26 1 3.1190 3.6092 1.2083 27 1 1.6363 4.1430 0.3774 28 1 1.9697 5.3154 2.5649 29 1 0.4718 4.3533 2.5378 30 1 1.6848 3.9740 4.6524 31 1 3.1416 3.4967 3.7476 32 1 3.0955 1.4162 2.4934 33 1 1.6067 0.4411 2.5227 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260523972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:25 Heat of formation + Delta-G solvation = -77.089322 kcal Electronic energy + Delta-G solvation = -13509.831822 eV Core-core repulsion = 11341.420920 eV Total energy + Delta-G solvation = -2168.410902 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.93467 -35.57536 -32.57502 -31.71540 -29.69351 -26.59572 -24.63723 -23.33638 -22.47187 -19.93183 -18.57140 -16.18362 -15.74125 -15.32794 -14.53266 -14.15239 -13.65444 -13.41856 -12.92532 -12.37315 -12.11805 -11.97299 -11.62539 -10.96147 -10.91018 -10.73928 -10.51947 -10.42993 -10.19399 -9.92394 -9.81050 -9.37323 -9.10737 -8.81117 -8.46796 -8.27038 -5.98775 -3.98311 3.29868 3.38910 3.42213 4.38129 4.46684 5.31532 5.37664 5.43071 5.51529 5.74218 5.81128 5.99510 6.11285 6.20892 6.30484 6.39712 6.40668 6.49969 6.65863 6.70600 6.87872 7.01798 7.11247 7.12023 7.42799 7.46581 7.68248 7.79418 7.94749 8.06788 8.48757 9.03817 9.63678 11.10550 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043289 B = 0.011390 C = 0.010082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.657668 B = 2457.717177 C = 2776.678761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.053 3.947 4 H 0.031 0.969 5 C -0.501 4.501 6 H 0.055 0.945 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.880 3.120 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.285 1.285 13 C -0.110 4.110 14 H 0.067 0.933 15 C -0.106 4.106 16 C -0.158 4.158 17 C 0.063 3.937 18 O -0.394 6.394 19 C 0.061 3.939 20 H 0.059 0.941 21 H 0.022 0.978 22 H 0.039 0.961 23 H 0.071 0.929 24 H 0.019 0.981 25 H 0.258 0.742 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.743 2.957 7.761 8.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.034 3.966 4 H 0.049 0.951 5 C -0.539 4.539 6 H 0.073 0.927 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.709 3.291 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.211 1.211 13 C -0.128 4.128 14 H 0.086 0.914 15 C -0.143 4.143 16 C -0.195 4.195 17 C -0.014 4.014 18 O -0.313 6.313 19 C -0.015 4.015 20 H 0.078 0.922 21 H 0.041 0.959 22 H 0.058 0.942 23 H 0.089 0.911 24 H 0.038 0.962 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.756 2.781 7.762 8.430 hybrid contribution -0.188 0.461 -1.255 1.350 sum -1.944 3.241 6.508 7.526 Atomic orbital electron populations 1.21695 0.97991 0.98157 1.01447 1.21504 0.94301 0.99710 0.99421 1.18686 0.96271 0.90959 0.90639 0.95078 1.21094 1.26183 1.16136 0.90519 0.92692 1.24924 0.94703 0.95399 0.98788 1.69964 1.26227 1.32880 1.23779 0.86719 0.79516 0.78947 0.83944 1.19822 1.21285 1.21083 1.21852 1.00586 0.94756 0.95644 0.91431 1.21536 1.00239 0.96484 0.96084 1.22255 1.01524 0.98966 0.96805 1.22467 0.97575 0.83486 0.97852 1.87843 1.73813 1.24904 1.44754 1.22866 0.97991 0.95593 0.85010 0.92211 0.95858 0.94248 0.91056 0.96226 0.93222 0.92744 0.90789 0.92013 0.91749 0.90093 0.93868 0.93959 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.33 37.16 0.35 -2.48 16 2 C -0.11 -2.55 5.19 -26.73 -0.14 -2.69 16 3 C 0.05 1.27 1.54 -91.77 -0.14 1.12 16 4 H 0.03 0.83 8.09 -51.93 -0.42 0.41 16 5 C -0.50 -13.15 6.50 -34.44 -0.22 -13.38 16 6 H 0.05 1.45 6.98 -52.49 -0.37 1.08 16 7 C 0.06 1.71 5.21 -17.82 -0.09 1.62 16 8 N -0.89 -25.25 12.14 55.43 0.67 -24.58 16 9 Si 0.88 21.09 29.55 -169.99 -5.02 16.07 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C -0.11 -2.24 1.55 -90.48 -0.14 -2.38 16 14 H 0.07 1.43 6.38 -51.93 -0.33 1.10 16 15 C -0.11 -2.01 5.00 -26.54 -0.13 -2.14 16 16 C -0.16 -2.46 6.14 -26.59 -0.16 -2.62 16 17 C 0.06 0.95 6.84 37.20 0.25 1.21 16 18 O -0.39 -7.09 10.77 -35.23 -0.38 -7.47 16 19 C 0.06 1.14 5.70 37.20 0.21 1.36 16 20 H 0.06 1.34 7.32 -51.93 -0.38 0.96 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.04 0.77 6.30 -51.93 -0.33 0.44 16 23 H 0.07 1.83 6.88 -51.93 -0.36 1.48 16 24 H 0.02 0.40 6.53 -51.93 -0.34 0.06 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.50 6.88 -51.93 -0.36 1.14 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.64 6.59 -51.93 -0.34 1.30 16 LS Contribution 254.00 15.07 3.83 3.83 Total: -1.00 -27.63 254.00 -6.44 -34.06 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.31 Total: -1.53 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -0.22 Total: -20.39 kcal Atomic # 7 Polarization: -25.25 SS G_CDS: 0.67 Total: -24.58 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.38 Total: -7.47 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.63 -6.44 -34.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.024 kcal (2) G-P(sol) polarization free energy of solvation -27.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds