Wall clock time and date at job start Mon Mar 30 2020 02:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47131 * 2 1 4 4 H 1.08998 * 109.46737 * 179.18890 * 3 2 1 5 5 C 1.50701 * 109.46756 * 299.18772 * 3 2 1 6 6 H 1.08001 * 120.00051 * 114.36699 * 5 3 2 7 7 C 1.37874 * 120.00089 * 294.36624 * 5 3 2 8 8 N 1.31516 * 119.99959 * 351.09955 * 7 5 3 9 9 Si 1.86802 * 120.00125 * 171.09850 * 7 5 3 10 10 H 1.48497 * 109.47169 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47272 * 120.00060 * 9 7 5 12 12 H 1.48502 * 109.46999 * 240.00202 * 9 7 5 13 13 C 1.53000 * 109.46855 * 59.18422 * 3 2 1 14 14 H 1.08996 * 109.57971 * 299.84284 * 13 3 2 15 15 C 1.53183 * 109.51727 * 179.68585 * 13 3 2 16 16 C 1.53180 * 109.03469 * 183.11584 * 15 13 3 17 17 C 1.53091 * 109.16191 * 56.98013 * 16 15 13 18 18 O 1.42903 * 109.41936 * 302.39006 * 17 16 15 19 19 C 1.42909 * 114.09389 * 61.15701 * 18 17 16 20 20 H 1.08999 * 109.47122 * 62.25305 * 1 2 3 21 21 H 1.09006 * 109.47296 * 182.25292 * 1 2 3 22 22 H 1.08998 * 109.47285 * 302.25282 * 1 2 3 23 23 H 1.09002 * 109.47338 * 239.99993 * 2 1 3 24 24 H 1.08998 * 109.47503 * 119.99652 * 2 1 3 25 25 H 0.96999 * 120.00244 * 179.97438 * 8 7 5 26 26 H 1.08998 * 109.54330 * 302.98388 * 15 13 3 27 27 H 1.08997 * 109.54323 * 63.25301 * 15 13 3 28 28 H 1.08998 * 109.52383 * 176.88853 * 16 15 13 29 29 H 1.08999 * 109.52284 * 297.01541 * 16 15 13 30 30 H 1.09002 * 109.47929 * 182.40918 * 17 16 15 31 31 H 1.09001 * 109.48088 * 62.37657 * 17 16 15 32 32 H 1.09005 * 109.48053 * 58.82827 * 19 18 17 33 33 H 1.08993 * 109.47928 * 178.84550 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4425 0.0145 5 6 1.5541 2.1471 -1.2404 6 1 0.8592 2.9696 -1.1572 7 6 1.9968 1.7416 -2.4816 8 7 2.9703 0.8626 -2.5777 9 14 1.2138 2.4408 -4.0268 10 1 0.1488 3.4044 -3.6496 11 1 2.2475 3.1372 -4.8340 12 1 0.6229 1.3368 -4.8253 13 6 1.5133 2.1697 1.2389 14 1 0.4234 2.1731 1.2246 15 6 2.0296 3.6118 1.2440 16 6 1.5607 4.3058 2.5266 17 6 2.0517 3.5084 3.7377 18 8 1.5614 2.1687 3.6551 19 6 2.0062 1.4549 2.4997 20 1 -0.3633 0.4784 -0.9095 21 1 -0.3634 -1.0269 0.0404 22 1 -0.3634 0.5484 0.8691 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.2816 0.5771 -3.4509 26 1 3.1190 3.6092 1.2083 27 1 1.6363 4.1430 0.3774 28 1 1.9697 5.3154 2.5649 29 1 0.4718 4.3533 2.5378 30 1 1.6848 3.9740 4.6524 31 1 3.1416 3.4967 3.7476 32 1 3.0955 1.4162 2.4934 33 1 1.6067 0.4411 2.5227 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260523972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:24 Heat of formation + Delta-G solvation = -92.865955 kcal Electronic energy + Delta-G solvation = -13510.515948 eV Core-core repulsion = 11341.420920 eV Total energy + Delta-G solvation = -2169.095028 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.40829 -37.30262 -34.18230 -33.56146 -31.23628 -28.49039 -26.16533 -25.10944 -24.02336 -21.46032 -20.32726 -18.15455 -17.22140 -16.78734 -16.39673 -15.64132 -15.22499 -15.03720 -14.57153 -14.06786 -13.97998 -13.42322 -13.24531 -12.85917 -12.60354 -12.46793 -12.22545 -12.01461 -11.85512 -11.66558 -11.41542 -11.14054 -10.75982 -10.59424 -10.34183 -10.11246 -8.07490 -6.11867 1.38033 1.42077 1.51250 2.45325 3.06655 3.24350 4.04711 4.08949 4.14681 4.24240 4.43864 4.61142 4.62308 4.70485 4.75140 4.83160 4.91089 4.95564 5.10513 5.18147 5.21270 5.32189 5.46265 5.52293 5.60818 5.66374 5.74990 5.99236 6.09937 6.35803 6.46800 6.97877 7.52765 9.01498 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043289 B = 0.011390 C = 0.010082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.657668 B = 2457.717177 C = 2776.678761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.109 4.109 3 C 0.053 3.947 4 H -0.004 1.004 5 C -0.503 4.503 6 H 0.051 0.949 7 C 0.015 3.985 8 N -0.921 5.921 9 Si 0.937 3.063 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.284 1.284 13 C -0.103 4.103 14 H 0.062 0.938 15 C -0.107 4.107 16 C -0.149 4.149 17 C 0.056 3.944 18 O -0.402 6.402 19 C 0.070 3.930 20 H 0.038 0.962 21 H 0.045 0.955 22 H 0.053 0.947 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.257 0.743 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 3.725 8.980 10.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.147 4.147 3 C 0.035 3.965 4 H 0.014 0.986 5 C -0.542 4.542 6 H 0.069 0.931 7 C -0.183 4.183 8 N -0.561 5.561 9 Si 0.764 3.236 10 H -0.191 1.191 11 H -0.212 1.212 12 H -0.210 1.210 13 C -0.122 4.122 14 H 0.080 0.920 15 C -0.145 4.145 16 C -0.187 4.187 17 C -0.020 4.020 18 O -0.321 6.321 19 C -0.007 4.007 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.072 0.928 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.131 0.869 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.654 3.562 8.991 10.028 hybrid contribution 0.116 0.250 -1.600 1.624 sum -2.538 3.812 7.391 8.695 Atomic orbital electron populations 1.21587 0.96193 0.99640 1.00973 1.21410 0.95838 0.98737 0.98689 1.18612 0.94102 0.92071 0.91725 0.98632 1.21360 1.25447 1.15768 0.91585 0.93089 1.25596 0.95202 0.95966 1.01554 1.70081 1.27530 1.34320 1.24204 0.85821 0.78750 0.78337 0.80697 1.19101 1.21207 1.20974 1.21708 0.99974 0.95552 0.94957 0.91985 1.21493 0.99582 0.95828 0.97561 1.22199 1.01645 0.99979 0.94878 1.22742 0.98277 0.82079 0.98878 1.87836 1.74067 1.26343 1.43867 1.22684 0.97830 0.95692 0.84462 0.94273 0.93585 0.92849 0.94436 0.94271 0.93386 0.93635 0.92704 0.89454 0.91622 0.86851 0.93105 0.94083 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.33 71.98 0.67 -4.48 16 2 C -0.11 -4.98 5.19 30.60 0.16 -4.82 16 3 C 0.05 2.59 1.54 -11.54 -0.02 2.57 16 4 H 0.00 -0.25 8.09 -2.39 -0.02 -0.27 16 5 C -0.50 -26.74 6.50 25.60 0.17 -26.58 16 6 H 0.05 2.70 6.98 -2.91 -0.02 2.68 16 7 C 0.01 0.81 5.21 84.65 0.44 1.25 16 8 N -0.92 -53.48 12.14 21.45 0.26 -53.22 16 9 Si 0.94 43.63 29.55 68.60 2.03 45.66 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 C -0.10 -4.14 1.55 -10.70 -0.02 -4.16 16 14 H 0.06 2.56 6.38 -2.39 -0.02 2.54 16 15 C -0.11 -3.98 5.00 30.72 0.15 -3.82 16 16 C -0.15 -4.25 6.14 30.68 0.19 -4.06 16 17 C 0.06 1.52 6.84 72.01 0.49 2.01 16 18 O -0.40 -13.38 10.77 -148.98 -1.60 -14.98 16 19 C 0.07 2.49 5.70 72.01 0.41 2.90 16 20 H 0.04 1.72 7.32 -2.39 -0.02 1.70 16 21 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 22 H 0.05 2.00 6.30 -2.39 -0.02 1.98 16 23 H 0.04 1.96 6.88 -2.39 -0.02 1.94 16 24 H 0.04 1.60 6.53 -2.39 -0.02 1.59 16 25 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 2.21 6.88 -2.39 -0.02 2.20 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.09 3.24 6.59 -2.39 -0.02 3.22 16 Total: -1.00 -58.87 254.00 4.39 -54.48 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.06 Total: 7.25 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 2.65 Total: -39.19 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.26 Total: -53.22 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -1.60 Total: -14.98 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -58.87 4.39 -54.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.390 kcal (2) G-P(sol) polarization free energy of solvation -58.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds