Wall clock time and date at job start Mon Mar 30 2020 02:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47121 * 2 1 4 4 H 1.09000 * 109.47095 * 184.88226 * 3 2 1 5 5 C 1.50702 * 109.47050 * 64.88663 * 3 2 1 6 6 H 1.08002 * 119.99272 * 245.71125 * 5 3 2 7 7 C 1.37878 * 120.00305 * 65.70753 * 5 3 2 8 8 N 1.31515 * 119.99495 * 5.45638 * 7 5 3 9 9 Si 1.86795 * 119.99881 * 185.45819 * 7 5 3 10 10 H 1.48502 * 109.46931 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47181 * 299.99757 * 9 7 5 12 12 H 1.48495 * 109.47600 * 60.00296 * 9 7 5 13 13 C 1.52997 * 109.47187 * 304.88462 * 3 2 1 14 14 H 1.08994 * 109.52267 * 55.27197 * 13 3 2 15 15 C 1.53180 * 109.52178 * 175.39858 * 13 3 2 16 16 C 1.53183 * 109.03107 * 176.82123 * 15 13 3 17 17 C 1.53095 * 109.21816 * 303.11372 * 16 15 13 18 18 O 1.42909 * 109.41046 * 57.57530 * 17 16 15 19 19 C 1.42908 * 114.09605 * 298.83811 * 18 17 16 20 20 H 1.08996 * 109.46872 * 305.11629 * 1 2 3 21 21 H 1.08996 * 109.46960 * 65.11819 * 1 2 3 22 22 H 1.09003 * 109.47027 * 185.11491 * 1 2 3 23 23 H 1.09004 * 109.46879 * 239.99932 * 2 1 3 24 24 H 1.09004 * 109.46958 * 120.00068 * 2 1 3 25 25 H 0.96991 * 120.00644 * 355.12562 * 8 7 5 26 26 H 1.08992 * 109.54097 * 296.75234 * 15 13 3 27 27 H 1.09002 * 109.54473 * 57.01902 * 15 13 3 28 28 H 1.09001 * 109.52761 * 183.17631 * 16 15 13 29 29 H 1.09008 * 109.46839 * 63.01936 * 16 15 13 30 30 H 1.08999 * 109.47779 * 297.59899 * 17 16 15 31 31 H 1.08998 * 109.49228 * 177.56106 * 17 16 15 32 32 H 1.08987 * 109.48452 * 301.18247 * 19 18 17 33 33 H 1.09000 * 109.48629 * 181.14454 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1265 1.4437 -0.0875 5 6 1.6390 2.1171 1.2865 6 1 0.9397 2.9399 1.2695 7 6 2.1646 1.6837 2.4852 8 7 3.0956 0.7549 2.4975 9 14 1.5545 2.4159 4.0917 10 1 2.2736 1.7855 5.2278 11 1 1.8081 3.8791 4.0968 12 1 0.0971 2.1657 4.2279 13 6 1.4323 2.1983 -1.1833 14 1 0.3455 2.1261 -1.1421 15 6 1.8503 3.6706 -1.1194 16 6 1.3023 4.3992 -2.3504 17 6 1.8114 3.7038 -3.6157 18 8 1.4133 2.3314 -3.5962 19 6 1.9364 1.5878 -2.4936 20 1 -0.3633 0.5911 0.8406 21 1 -0.3633 0.4324 -0.9322 22 1 -0.3633 -1.0236 0.0916 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 3.3622 0.3244 1.6702 26 1 1.4459 4.1254 -0.2152 27 1 2.9380 3.7407 -1.1094 28 1 1.6424 5.4348 -2.3421 29 1 0.2127 4.3725 -2.3333 30 1 2.8990 3.7663 -3.6523 31 1 1.3893 4.1922 -4.4940 32 1 3.0255 1.6227 -2.5156 33 1 1.6043 0.5520 -2.5634 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260523980.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:26 Heat of formation + Delta-G solvation = -95.604852 kcal Electronic energy + Delta-G solvation = -13555.493394 eV Core-core repulsion = 11386.279599 eV Total energy + Delta-G solvation = -2169.213795 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.53259 -37.62752 -34.29282 -33.52128 -31.36178 -28.13164 -26.30022 -25.13520 -24.13872 -21.52286 -20.63109 -18.63272 -17.26000 -16.92064 -15.89687 -15.64380 -15.27440 -15.11856 -14.81082 -14.71078 -13.71694 -13.56198 -13.22905 -12.68694 -12.63514 -12.54779 -12.09207 -11.99401 -11.94264 -11.75599 -11.51165 -11.16564 -10.82873 -10.65430 -10.35035 -10.03750 -8.46544 -6.18228 1.53466 1.60143 1.78276 2.60840 2.98036 3.29663 3.94650 3.99820 4.06754 4.12942 4.33454 4.45510 4.47714 4.58059 4.61358 4.70283 4.81591 4.85931 4.99580 5.05984 5.12059 5.13896 5.31324 5.41727 5.44333 5.52769 5.68831 5.77852 6.20761 6.28339 6.36707 6.77688 7.58841 8.90268 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042286 B = 0.011584 C = 0.010156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.003033 B = 2416.602588 C = 2756.413313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.118 4.118 3 C 0.038 3.962 4 H -0.014 1.014 5 C -0.579 4.579 6 H 0.045 0.955 7 C -0.031 4.031 8 N -0.945 5.945 9 Si 1.102 2.898 10 H -0.290 1.290 11 H -0.275 1.275 12 H -0.273 1.273 13 C -0.098 4.098 14 H 0.064 0.936 15 C -0.106 4.106 16 C -0.149 4.149 17 C 0.056 3.944 18 O -0.400 6.400 19 C 0.070 3.930 20 H 0.041 0.959 21 H 0.055 0.945 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.032 0.968 25 H 0.261 0.739 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.116 0.884 32 H 0.040 0.960 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.807 4.628 -8.971 10.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.156 4.156 3 C 0.020 3.980 4 H 0.004 0.996 5 C -0.618 4.618 6 H 0.063 0.937 7 C -0.229 4.229 8 N -0.584 5.584 9 Si 0.926 3.074 10 H -0.216 1.216 11 H -0.200 1.200 12 H -0.199 1.199 13 C -0.117 4.117 14 H 0.082 0.918 15 C -0.143 4.143 16 C -0.187 4.187 17 C -0.020 4.020 18 O -0.319 6.319 19 C -0.007 4.007 20 H 0.060 0.940 21 H 0.074 0.926 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.134 0.866 32 H 0.058 0.942 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.694 4.541 -7.485 9.502 hybrid contribution 0.272 -0.102 -1.066 1.105 sum -3.421 4.439 -8.551 10.224 Atomic orbital electron populations 1.21570 0.95546 1.00074 1.01141 1.21573 0.96797 0.98593 0.98663 1.18774 0.93243 0.92392 0.93616 0.99599 1.22155 1.28587 1.17945 0.93065 0.93672 1.26899 0.94070 0.96436 1.05510 1.70885 1.28924 1.27276 1.31272 0.83110 0.76078 0.75722 0.72504 1.21583 1.20021 1.19894 1.21620 1.00137 0.95576 0.94333 0.91762 1.21489 0.99461 0.95383 0.98017 1.22208 1.01381 1.00272 0.94828 1.22759 0.99145 0.81467 0.98607 1.87839 1.74440 1.22741 1.46917 1.22657 0.96920 0.95629 0.85449 0.93964 0.92574 0.93356 0.93805 0.94942 0.92849 0.92638 0.93939 0.89352 0.91531 0.93135 0.86628 0.94159 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.15 71.98 0.66 -4.43 16 2 C -0.12 -5.36 5.01 30.60 0.15 -5.20 16 3 C 0.04 1.85 1.31 -11.54 -0.02 1.84 16 4 H -0.01 -0.76 7.66 -2.39 -0.02 -0.78 16 5 C -0.58 -31.11 6.56 25.60 0.17 -30.94 16 6 H 0.05 2.42 6.64 -2.91 -0.02 2.40 16 7 C -0.03 -1.76 5.23 84.65 0.44 -1.32 16 8 N -0.94 -57.02 13.09 21.45 0.28 -56.74 16 9 Si 1.10 50.21 29.91 68.60 2.05 52.26 16 10 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 13 C -0.10 -3.94 1.60 -10.70 -0.02 -3.96 16 14 H 0.06 2.66 6.20 -2.39 -0.01 2.64 16 15 C -0.11 -3.98 4.92 30.72 0.15 -3.83 16 16 C -0.15 -4.27 6.13 30.69 0.19 -4.08 16 17 C 0.06 1.51 6.84 72.01 0.49 2.01 16 18 O -0.40 -13.26 10.77 -148.98 -1.60 -14.86 16 19 C 0.07 2.49 5.82 72.01 0.42 2.91 16 20 H 0.04 1.87 7.22 -2.39 -0.02 1.85 16 21 H 0.06 2.06 6.55 -2.39 -0.02 2.04 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.04 1.77 6.87 -2.38 -0.02 1.75 16 24 H 0.03 1.66 6.11 -2.38 -0.01 1.65 16 25 H 0.26 15.81 5.77 -92.72 -0.53 15.28 16 26 H 0.05 2.28 6.59 -2.39 -0.02 2.27 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 3.19 6.80 -2.39 -0.02 3.17 16 Total: -1.00 -61.13 251.05 4.67 -56.46 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.30 Total: 9.90 kcal Atomic # 6 Polarization: -49.66 SS G_CDS: 2.64 Total: -47.02 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.28 Total: -56.74 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -1.60 Total: -14.86 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.26 kcal Total: -61.13 4.67 -56.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523980.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.149 kcal (2) G-P(sol) polarization free energy of solvation -61.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds