Wall clock time and date at job start Mon Mar 30 2020 02:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99897 * 2 1 4 4 H 1.48498 * 109.47133 * 239.99487 * 3 2 1 5 5 H 1.48495 * 109.47476 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47072 * 119.99949 * 3 2 1 7 7 C 1.37873 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99841 * 185.49491 * 7 2 1 9 9 C 1.50698 * 120.00420 * 5.49893 * 7 2 1 10 10 H 1.09008 * 109.47062 * 355.78547 * 9 7 2 11 11 C 1.53000 * 109.47054 * 235.79234 * 9 7 2 12 12 N 1.46900 * 109.47126 * 64.07569 * 11 9 7 13 13 C 1.53001 * 109.47452 * 115.78814 * 9 7 2 14 14 C 1.53122 * 109.52053 * 180.02562 * 13 9 7 15 15 C 1.53041 * 109.27522 * 177.56214 * 14 13 9 16 16 N 1.46850 * 109.51966 * 300.82035 * 15 14 13 17 17 C 1.46845 * 111.20090 * 61.74559 * 16 15 14 18 18 C 1.53038 * 109.52241 * 298.25535 * 17 16 15 19 19 H 0.97003 * 120.00374 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47301 * 184.07370 * 11 9 7 21 21 H 1.09002 * 109.46902 * 304.07550 * 11 9 7 22 22 H 1.00902 * 110.99922 * 173.96996 * 12 11 9 23 23 H 1.00900 * 111.00251 * 297.91973 * 12 11 9 24 24 H 1.09004 * 109.57115 * 59.84421 * 13 9 7 25 25 H 1.08998 * 109.50225 * 57.62313 * 14 13 9 26 26 H 1.08995 * 109.53498 * 297.52134 * 14 13 9 27 27 H 1.09002 * 109.46004 * 60.83484 * 15 14 13 28 28 H 1.08996 * 109.45988 * 180.80425 * 15 14 13 29 29 H 1.00908 * 110.99935 * 185.83811 * 16 15 14 30 30 H 1.08994 * 109.46646 * 178.23609 * 17 16 15 31 31 H 1.09008 * 109.46227 * 58.26829 * 17 16 15 32 32 H 1.09000 * 109.50182 * 299.24127 * 18 17 16 33 33 H 1.09002 * 109.50546 * 179.11728 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0807 -1.1962 0.0901 9 6 1.2562 -2.4962 -0.1239 10 1 0.1839 -2.3001 -0.1281 11 6 1.6046 -3.3999 1.0605 12 7 1.1356 -2.7776 2.3058 13 6 1.6529 -3.1898 -1.4287 14 6 0.8927 -4.5128 -1.5566 15 6 1.2474 -5.1723 -2.8912 16 7 0.8881 -4.2720 -3.9943 17 6 1.6409 -3.0134 -3.9192 18 6 1.2979 -2.2894 -2.6153 19 1 -0.4851 0.8400 -0.0004 20 1 1.1206 -4.3682 0.9335 21 1 2.6850 -3.5370 1.1073 22 1 1.2652 -3.3978 3.0910 23 1 1.5953 -1.8934 2.4637 24 1 2.7255 -3.3842 -1.4274 25 1 -0.1797 -4.3214 -1.5189 26 1 1.1732 -5.1749 -0.7375 27 1 2.3178 -5.3759 -2.9225 28 1 0.6968 -6.1076 -2.9918 29 1 1.0241 -4.7219 -4.8872 30 1 1.3762 -2.3807 -4.7664 31 1 2.7094 -3.2272 -3.9457 32 1 0.2319 -2.0631 -2.5942 33 1 1.8686 -1.3629 -2.5525 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260614482.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:10 Heat of formation + Delta-G solvation = -19.324861 kcal Electronic energy + Delta-G solvation = -13422.741544 eV Core-core repulsion = 11289.128248 eV Total energy + Delta-G solvation = -2133.613295 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.18836 -35.02231 -32.08554 -31.43461 -30.07751 -27.31711 -24.39145 -22.60762 -21.84651 -19.58153 -18.60759 -16.28745 -16.13199 -14.65343 -14.43929 -14.02736 -13.73297 -13.27004 -12.94777 -12.77752 -12.17935 -11.70436 -11.50530 -11.29001 -10.85953 -10.72660 -10.55107 -10.42603 -9.93475 -9.67214 -9.23110 -8.84943 -8.66253 -8.34708 -8.01615 -7.46278 -5.89784 -3.92411 3.33496 3.40192 3.41894 4.48938 4.67200 5.35664 5.53300 5.62526 5.69241 5.80805 5.93375 6.04385 6.17317 6.28473 6.40400 6.57588 6.61438 6.65463 6.81076 6.90528 7.23620 7.27996 7.43062 7.54163 7.64014 7.80324 7.90631 8.09334 8.41464 8.52958 8.65482 9.21810 9.68832 11.17764 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032686 B = 0.013291 C = 0.010343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.438686 B = 2106.215874 C = 2706.603940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.076 3.924 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.512 4.512 8 H 0.043 0.957 9 C 0.037 3.963 10 H 0.078 0.922 11 C 0.075 3.925 12 N -0.837 5.837 13 C -0.072 4.072 14 C -0.116 4.116 15 C 0.060 3.940 16 N -0.689 5.689 17 C 0.055 3.945 18 C -0.090 4.090 19 H 0.259 0.741 20 H 0.038 0.962 21 H -0.004 1.004 22 H 0.310 0.690 23 H 0.347 0.653 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.020 0.980 28 H 0.061 0.939 29 H 0.329 0.671 30 H 0.062 0.938 31 H 0.019 0.981 32 H 0.064 0.936 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.104 -6.743 -3.957 8.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.127 4.127 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.550 4.550 8 H 0.062 0.938 9 C 0.018 3.982 10 H 0.096 0.904 11 C -0.056 4.056 12 N -0.365 5.365 13 C -0.092 4.092 14 C -0.153 4.153 15 C -0.069 4.069 16 N -0.320 5.320 17 C -0.074 4.074 18 C -0.128 4.128 19 H 0.069 0.931 20 H 0.057 0.943 21 H 0.015 0.985 22 H 0.119 0.881 23 H 0.161 0.839 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.668 -6.329 -3.985 7.663 hybrid contribution 2.512 0.558 -0.024 2.574 sum 4.180 -5.771 -4.008 8.176 Atomic orbital electron populations 1.69920 1.05669 1.26209 1.49553 1.24883 0.94619 0.98475 0.94738 0.86913 0.79807 0.84254 0.78439 1.20484 1.21422 1.20546 1.20880 0.92483 0.90778 1.50905 0.93844 1.18987 1.00660 0.91866 0.86725 0.90402 1.21937 0.94298 0.96560 0.92793 1.58611 1.66594 1.07734 1.03590 1.21263 0.97033 0.92824 0.98053 1.21780 1.01579 0.97821 0.94160 1.21940 0.97194 0.94941 0.92809 1.60308 1.60552 1.06126 1.04969 1.22091 0.94210 0.90971 1.00088 1.21382 1.02270 0.98084 0.91071 0.93088 0.94328 0.98545 0.88111 0.83866 0.94234 0.91590 0.92572 0.96187 0.92037 0.85503 0.91946 0.96270 0.91700 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.96 12.62 55.43 0.70 -24.26 16 2 C 0.08 2.05 5.45 -17.82 -0.10 1.95 16 3 Si 0.88 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -13.48 6.21 -34.44 -0.21 -13.69 16 8 H 0.04 1.16 7.82 -52.49 -0.41 0.75 16 9 C 0.04 0.89 1.91 -91.77 -0.18 0.71 16 10 H 0.08 2.19 6.92 -51.92 -0.36 1.83 16 11 C 0.07 1.64 5.98 -3.82 -0.02 1.61 16 12 N -0.84 -17.94 9.56 -10.37 -0.10 -18.04 16 13 C -0.07 -1.53 1.83 -90.49 -0.17 -1.70 16 14 C -0.12 -2.15 4.95 -26.65 -0.13 -2.28 16 15 C 0.06 0.96 6.55 -3.83 -0.03 0.93 16 16 N -0.69 -11.10 6.85 -113.81 -0.78 -11.88 16 17 C 0.06 0.96 6.55 -3.83 -0.03 0.94 16 18 C -0.09 -1.92 5.09 -26.65 -0.14 -2.05 16 19 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 20 H 0.04 0.79 6.28 -51.93 -0.33 0.46 16 21 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 22 H 0.31 5.53 9.08 -39.29 -0.36 5.18 16 23 H 0.35 7.85 8.20 -39.29 -0.32 7.53 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.06 0.98 6.49 -51.93 -0.34 0.64 16 27 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.33 4.35 8.90 -39.29 -0.35 4.00 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.07 1.68 7.32 -51.93 -0.38 1.30 16 LS Contribution 258.88 15.07 3.90 3.90 Total: -1.00 -28.01 258.88 -7.65 -35.66 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.36 Total: 12.22 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -0.99 Total: -13.57 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.18 Total: -54.18 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.01 -7.65 -35.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614482.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.337 kcal (2) G-P(sol) polarization free energy of solvation -28.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds