Wall clock time and date at job start Mon Mar 30 2020 02:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00173 * 2 1 4 4 H 1.48493 * 109.47445 * 240.00334 * 3 2 1 5 5 H 1.48503 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46913 * 120.00162 * 3 2 1 7 7 C 1.37877 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99523 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00212 * 0.26957 * 7 2 1 10 10 H 1.09003 * 109.46898 * 299.73004 * 9 7 2 11 11 C 1.53003 * 109.46718 * 59.72698 * 9 7 2 12 12 N 1.46906 * 109.46755 * 183.09254 * 11 9 7 13 13 C 1.52999 * 109.47153 * 179.72779 * 9 7 2 14 14 C 1.53114 * 109.52122 * 64.57525 * 13 9 7 15 15 C 1.53052 * 109.27474 * 182.50417 * 14 13 9 16 16 N 1.46843 * 109.57610 * 59.08458 * 15 14 13 17 17 C 1.46852 * 111.19549 * 298.29340 * 16 15 14 18 18 C 1.53037 * 109.52768 * 61.74092 * 17 16 15 19 19 H 0.97008 * 119.99675 * 359.97438 * 1 2 3 20 20 H 1.08992 * 109.47218 * 303.09205 * 11 9 7 21 21 H 1.09003 * 109.46816 * 63.09836 * 11 9 7 22 22 H 1.00900 * 110.99897 * 56.05079 * 12 11 9 23 23 H 1.00898 * 110.99702 * 180.02562 * 12 11 9 24 24 H 1.08999 * 109.52384 * 184.70097 * 13 9 7 25 25 H 1.08999 * 109.50510 * 302.38167 * 14 13 9 26 26 H 1.09003 * 109.51000 * 62.50105 * 14 13 9 27 27 H 1.08994 * 109.40617 * 299.06563 * 15 14 13 28 28 H 1.08998 * 109.45329 * 179.12676 * 15 14 13 29 29 H 1.00899 * 111.00277 * 62.38439 * 16 15 14 30 30 H 1.08999 * 109.45859 * 301.72205 * 17 16 15 31 31 H 1.09004 * 109.45876 * 181.75964 * 17 16 15 32 32 H 1.08993 * 109.50706 * 180.87940 * 18 17 16 33 33 H 1.09006 * 109.53100 * 60.77611 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0073 10 1 0.6243 -2.5615 0.8825 11 6 0.3713 -2.5736 -1.2569 12 7 -0.4187 -3.8119 -1.2265 13 6 2.2451 -3.6621 -0.0133 14 6 3.0486 -3.6551 1.2901 15 6 4.0836 -4.7820 1.2516 16 7 4.9772 -4.5902 0.1022 17 6 4.2334 -4.6412 -1.1630 18 6 3.2041 -3.5093 -1.1972 19 1 -0.4850 0.8401 0.0004 20 1 -0.2997 -1.7151 -1.2806 21 1 1.0018 -2.5667 -2.1460 22 1 -0.9637 -3.8724 -0.3795 23 1 -1.0081 -3.8848 -2.0421 24 1 1.7036 -4.6039 -0.1024 25 1 3.5582 -2.6977 1.3983 26 1 2.3752 -3.8070 2.1336 27 1 3.5725 -5.7401 1.1584 28 1 4.6677 -4.7699 2.1717 29 1 5.4918 -3.7261 0.1845 30 1 3.7217 -5.6002 -1.2449 31 1 4.9265 -4.5273 -1.9965 32 1 2.6416 -3.5570 -2.1296 33 1 3.7158 -2.5492 -1.1295 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260614497.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:12 Heat of formation + Delta-G solvation = -20.986542 kcal Electronic energy + Delta-G solvation = -13513.220773 eV Core-core repulsion = 11379.535421 eV Total energy + Delta-G solvation = -2133.685351 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.45115 -35.07146 -32.12329 -31.20887 -30.12917 -27.16729 -24.07339 -22.80380 -22.01564 -20.12270 -18.81778 -16.40068 -15.25545 -14.67216 -14.41968 -14.02978 -13.65634 -13.30603 -13.15413 -12.83863 -12.00902 -11.88211 -11.34661 -11.23081 -10.97990 -10.69998 -10.52476 -10.40508 -10.21386 -9.97299 -9.33087 -9.19675 -8.68320 -8.39289 -7.78641 -7.52355 -6.00670 -4.06642 3.28031 3.33220 3.35694 4.40472 4.84486 5.25868 5.49573 5.65137 5.77854 5.86406 5.97687 6.09681 6.14770 6.26849 6.40298 6.66552 6.72707 6.79657 6.90970 7.06471 7.12023 7.31072 7.38347 7.52615 7.58773 7.83141 7.92385 8.00211 8.16789 8.38736 8.52380 8.98151 9.57243 11.03227 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031462 B = 0.013431 C = 0.010819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.754315 B = 2084.153229 C = 2587.535641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.503 4.503 8 H 0.057 0.943 9 C 0.059 3.941 10 H 0.020 0.980 11 C 0.058 3.942 12 N -0.858 5.858 13 C -0.065 4.065 14 C -0.145 4.145 15 C 0.056 3.944 16 N -0.690 5.690 17 C 0.054 3.946 18 C -0.140 4.140 19 H 0.259 0.741 20 H 0.060 0.940 21 H 0.043 0.957 22 H 0.327 0.673 23 H 0.317 0.683 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.336 0.664 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.849 -5.761 -0.603 6.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.040 3.960 10 H 0.038 0.962 11 C -0.072 4.072 12 N -0.385 5.385 13 C -0.084 4.084 14 C -0.184 4.184 15 C -0.074 4.074 16 N -0.318 5.318 17 C -0.075 4.075 18 C -0.179 4.179 19 H 0.069 0.931 20 H 0.078 0.922 21 H 0.061 0.939 22 H 0.138 0.862 23 H 0.126 0.874 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.152 0.848 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.616 -6.671 -0.648 8.138 hybrid contribution -0.988 2.606 0.004 2.787 sum 3.627 -4.065 -0.644 5.486 Atomic orbital electron populations 1.69869 1.05897 1.26353 1.51217 1.25002 0.94818 0.99042 0.95329 0.86731 0.79657 0.83483 0.78573 1.20353 1.21441 1.20342 1.21189 0.92815 0.90421 1.49704 0.92449 1.18635 0.92219 0.91808 0.93299 0.96238 1.22087 0.96585 0.89086 0.99422 1.59063 1.31174 1.42437 1.05815 1.21002 0.95562 0.99654 0.92142 1.22248 0.98388 0.98808 0.98986 1.22023 0.93811 0.98647 0.92899 1.60807 1.27502 1.41051 1.02445 1.22055 0.95296 0.98994 0.91184 1.22216 0.97661 0.98395 0.99591 0.93125 0.92158 0.93889 0.86204 0.87388 0.92618 0.91464 0.92822 0.91886 0.92030 0.84795 0.91868 0.92094 0.92269 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.05 11.29 55.43 0.63 -24.42 16 2 C 0.06 1.58 5.29 -17.82 -0.09 1.49 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.50 -13.12 7.07 -34.44 -0.24 -13.37 16 8 H 0.06 1.49 5.67 -52.49 -0.30 1.19 16 9 C 0.06 1.42 1.73 -91.77 -0.16 1.26 16 10 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 11 C 0.06 1.34 5.83 -3.82 -0.02 1.32 16 12 N -0.86 -16.80 8.92 -10.37 -0.09 -16.90 16 13 C -0.06 -1.33 1.95 -90.50 -0.18 -1.51 16 14 C -0.15 -2.74 5.21 -26.65 -0.14 -2.88 16 15 C 0.06 0.90 6.55 -3.83 -0.03 0.87 16 16 N -0.69 -11.01 6.87 -113.81 -0.78 -11.80 16 17 C 0.05 0.89 6.55 -3.83 -0.03 0.86 16 18 C -0.14 -2.68 4.78 -26.65 -0.13 -2.81 16 19 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 20 H 0.06 1.58 5.98 -51.93 -0.31 1.27 16 21 H 0.04 1.01 6.48 -51.93 -0.34 0.68 16 22 H 0.33 6.29 8.99 -39.29 -0.35 5.94 16 23 H 0.32 5.50 9.08 -39.29 -0.36 5.15 16 24 H 0.06 1.17 7.57 -51.93 -0.39 0.77 16 25 H 0.07 1.38 6.86 -51.93 -0.36 1.02 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.34 5.18 8.86 -39.29 -0.35 4.84 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.18 6.62 -51.93 -0.34 0.83 16 33 H 0.07 1.39 6.26 -51.93 -0.32 1.07 16 LS Contribution 252.43 15.07 3.80 3.80 Total: -1.00 -26.93 252.43 -7.57 -34.50 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -5.09 Total: 13.59 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -1.01 Total: -14.75 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.25 Total: -53.11 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -26.93 -7.57 -34.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614497.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.512 kcal (2) G-P(sol) polarization free energy of solvation -26.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds