Wall clock time and date at job start Mon Mar 30 2020 02:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 14 14 C 1.53176 * 109.54540 * 299.82508 * 13 2 1 15 15 C 1.53109 * 109.15716 * 183.23930 * 14 13 2 16 16 O 1.42900 * 109.48502 * 57.47579 * 15 14 13 17 17 C 1.42909 * 114.09965 * 298.88617 * 16 15 14 18 18 C 1.53095 * 109.41065 * 61.15879 * 17 16 15 19 19 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 20 20 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 22 22 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 23 23 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 24 24 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 25 25 H 1.09004 * 109.54199 * 60.00429 * 13 2 1 26 26 H 1.08994 * 109.52245 * 303.05698 * 14 13 2 27 27 H 1.09005 * 109.52443 * 63.24927 * 14 13 2 28 28 H 1.09001 * 109.40833 * 297.49567 * 15 14 13 29 29 H 1.08997 * 109.48376 * 177.50449 * 15 14 13 30 30 H 1.08998 * 109.48203 * 301.18120 * 17 16 15 31 31 H 1.08999 * 109.48101 * 181.14020 * 17 16 15 32 32 H 1.09003 * 109.51963 * 182.48485 * 18 17 16 33 33 H 1.09001 * 109.52243 * 62.29587 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7283 8 7 1.6458 0.2776 -4.7993 9 14 2.9637 -1.9884 -3.9026 10 1 2.0246 -3.1328 -4.0199 11 1 3.8126 -1.9183 -5.1190 12 1 3.8253 -2.1756 -2.7077 13 6 2.0400 -0.7211 1.2493 14 6 1.5339 0.0023 2.5010 15 6 2.1149 -0.6777 3.7437 16 8 3.5419 -0.6680 3.6692 17 6 4.0723 -1.3716 2.5441 18 6 3.5718 -0.7182 1.2532 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.6055 -1.7198 -1.2951 23 1 3.1264 -0.7994 -1.2055 24 1 1.8931 -0.0454 -5.6799 25 1 1.6773 -1.7491 1.2505 26 1 1.8539 1.0439 2.4741 27 1 0.4454 -0.0446 2.5339 28 1 1.7604 -1.7073 3.7923 29 1 1.7938 -0.1401 4.6359 30 1 3.7434 -2.4103 2.5769 31 1 5.1613 -1.3339 2.5721 32 1 3.9393 -1.2799 0.3944 33 1 3.9341 0.3084 1.2004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260621165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:21 Heat of formation + Delta-G solvation = -78.047506 kcal Electronic energy + Delta-G solvation = -13168.145495 eV Core-core repulsion = 10999.693043 eV Total energy + Delta-G solvation = -2168.452452 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.32794 -36.07032 -32.72910 -30.99776 -30.92032 -27.52576 -25.07291 -23.38246 -22.22945 -20.09763 -19.04374 -16.88605 -15.83519 -15.81051 -14.85723 -14.30579 -13.87398 -13.66253 -13.08843 -12.94073 -12.51288 -12.22992 -11.65952 -11.27080 -11.19809 -11.03804 -10.87898 -10.61024 -10.38837 -10.04130 -9.77182 -9.73105 -9.47647 -9.07832 -8.93315 -8.50772 -6.01824 -3.98333 3.30743 3.38401 3.41279 4.01343 4.46661 5.00212 5.05282 5.19124 5.24918 5.32091 5.39009 5.57016 5.69399 5.77654 5.92006 6.03298 6.07081 6.14816 6.25281 6.37910 6.44310 6.53050 6.63593 6.86767 7.00141 7.10239 7.30344 7.35054 7.49854 7.83984 8.57985 9.04017 9.61355 11.11774 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048646 B = 0.009480 C = 0.008362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.444306 B = 2952.945750 C = 3347.523859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 H 0.061 0.939 4 C -0.011 4.011 5 C -0.513 4.513 6 H 0.072 0.928 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C -0.086 4.086 14 C -0.151 4.151 15 C 0.061 3.939 16 O -0.389 6.389 17 C 0.061 3.939 18 C -0.152 4.152 19 H 0.065 0.935 20 H 0.042 0.958 21 H 0.035 0.965 22 H 0.009 0.991 23 H 0.018 0.982 24 H 0.262 0.738 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.611 -3.546 14.157 14.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 H 0.080 0.920 4 C -0.048 4.048 5 C -0.551 4.551 6 H 0.090 0.910 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.104 4.104 14 C -0.189 4.189 15 C -0.016 4.016 16 O -0.308 6.308 17 C -0.016 4.016 18 C -0.190 4.190 19 H 0.084 0.916 20 H 0.061 0.939 21 H 0.054 0.946 22 H 0.027 0.973 23 H 0.036 0.964 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.740 -3.454 14.096 14.617 hybrid contribution 0.281 -0.977 -0.592 1.176 sum 2.021 -4.431 13.504 14.356 Atomic orbital electron populations 1.21773 0.96088 1.00730 1.00698 1.21024 0.95206 0.99225 0.93512 0.92013 1.19681 0.96054 0.95639 0.93404 1.21177 1.35193 1.09543 0.89222 0.90951 1.25038 0.95698 0.96936 0.95976 1.69918 1.47288 1.39320 0.97998 0.86805 0.80649 0.84358 0.77613 1.20444 1.21499 1.19079 1.21297 0.94521 0.99517 0.95093 1.22302 1.00930 1.00667 0.94974 1.22576 0.81127 0.99608 0.98257 1.87871 1.20536 1.76068 1.46331 1.22621 0.98473 0.94608 0.85891 1.22297 0.96655 1.02332 0.97696 0.91586 0.93880 0.94595 0.97315 0.96373 0.92857 0.91842 0.91265 0.90827 0.93669 0.89494 0.93619 0.89341 0.90226 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.66 37.16 0.32 -2.18 16 2 C -0.07 -1.39 1.93 -90.62 -0.17 -1.56 16 3 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 4 C -0.01 -0.25 3.30 -27.88 -0.09 -0.34 16 5 C -0.51 -14.51 8.96 -34.44 -0.31 -14.82 16 6 H 0.07 2.20 7.30 -52.49 -0.38 1.82 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.08 13.96 55.43 0.77 -27.31 16 9 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 13 C -0.09 -1.38 1.85 -90.44 -0.17 -1.55 16 14 C -0.15 -2.08 4.98 -26.58 -0.13 -2.21 16 15 C 0.06 0.76 6.84 37.21 0.25 1.02 16 16 O -0.39 -5.66 10.77 -35.23 -0.38 -6.04 16 17 C 0.06 0.82 6.84 37.21 0.25 1.07 16 18 C -0.15 -2.38 4.98 -26.59 -0.13 -2.51 16 19 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 20 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.04 0.56 6.51 -51.93 -0.34 0.22 16 22 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 23 H 0.02 0.43 5.31 -51.93 -0.28 0.15 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 0.94 6.63 -51.93 -0.34 0.60 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.32 6.51 -51.93 -0.34 0.98 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 255.14 15.07 3.84 3.84 Total: -1.00 -30.34 255.14 -6.11 -36.45 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -5.41 Total: -2.81 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -0.27 Total: -21.32 kcal Atomic # 7 Polarization: -28.08 SS G_CDS: 0.77 Total: -27.31 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.38 Total: -6.04 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.34 -6.11 -36.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260621165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.599 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds