Wall clock time and date at job start Mon Mar 30 2020 02:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 14 14 C 1.53176 * 109.54540 * 299.82508 * 13 2 1 15 15 C 1.53109 * 109.15716 * 183.23930 * 14 13 2 16 16 O 1.42900 * 109.48502 * 57.47579 * 15 14 13 17 17 C 1.42909 * 114.09965 * 298.88617 * 16 15 14 18 18 C 1.53095 * 109.41065 * 61.15879 * 17 16 15 19 19 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 20 20 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 22 22 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 23 23 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 24 24 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 25 25 H 1.09004 * 109.54199 * 60.00429 * 13 2 1 26 26 H 1.08994 * 109.52245 * 303.05698 * 14 13 2 27 27 H 1.09005 * 109.52443 * 63.24927 * 14 13 2 28 28 H 1.09001 * 109.40833 * 297.49567 * 15 14 13 29 29 H 1.08997 * 109.48376 * 177.50449 * 15 14 13 30 30 H 1.08998 * 109.48203 * 301.18120 * 17 16 15 31 31 H 1.08999 * 109.48101 * 181.14020 * 17 16 15 32 32 H 1.09003 * 109.51963 * 182.48485 * 18 17 16 33 33 H 1.09001 * 109.52243 * 62.29587 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7283 8 7 1.6458 0.2776 -4.7993 9 14 2.9637 -1.9884 -3.9026 10 1 2.0246 -3.1328 -4.0199 11 1 3.8126 -1.9183 -5.1190 12 1 3.8253 -2.1756 -2.7077 13 6 2.0400 -0.7211 1.2493 14 6 1.5339 0.0023 2.5010 15 6 2.1149 -0.6777 3.7437 16 8 3.5419 -0.6680 3.6692 17 6 4.0723 -1.3716 2.5441 18 6 3.5718 -0.7182 1.2532 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.6055 -1.7198 -1.2951 23 1 3.1264 -0.7994 -1.2055 24 1 1.8931 -0.0454 -5.6799 25 1 1.6773 -1.7491 1.2505 26 1 1.8539 1.0439 2.4741 27 1 0.4454 -0.0446 2.5339 28 1 1.7604 -1.7073 3.7923 29 1 1.7938 -0.1401 4.6359 30 1 3.7434 -2.4103 2.5769 31 1 5.1613 -1.3339 2.5721 32 1 3.9393 -1.2799 0.3944 33 1 3.9341 0.3084 1.2004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260621165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:21 Heat of formation + Delta-G solvation = -97.202499 kcal Electronic energy + Delta-G solvation = -13168.976118 eV Core-core repulsion = 10999.693043 eV Total energy + Delta-G solvation = -2169.283074 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.48683 -37.51123 -34.75040 -32.51396 -32.08504 -29.35349 -26.45254 -24.72010 -23.76460 -21.41607 -20.58232 -18.96578 -17.04183 -16.86082 -16.39743 -15.93553 -15.26399 -15.03903 -14.60848 -14.45430 -14.28559 -13.62661 -13.26911 -12.89439 -12.62220 -12.50587 -12.24424 -12.15522 -11.80569 -11.73131 -11.51448 -11.19442 -10.98161 -10.83404 -10.71597 -10.27855 -8.27225 -6.29141 1.34102 1.35987 1.47676 2.36436 3.03332 3.08271 3.81254 3.85981 4.01746 4.16063 4.35776 4.39393 4.53285 4.63759 4.65837 4.70070 4.84414 4.89292 5.00572 5.06342 5.08375 5.19181 5.21842 5.34918 5.39791 5.44963 5.59666 5.74574 5.76515 6.31971 6.33755 6.78599 7.34247 8.89757 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048646 B = 0.009480 C = 0.008362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.444306 B = 2952.945750 C = 3347.523859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.069 4.069 3 H 0.043 0.957 4 C -0.007 4.007 5 C -0.520 4.520 6 H 0.032 0.968 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.245 1.245 13 C -0.081 4.081 14 C -0.147 4.147 15 C 0.060 3.940 16 O -0.404 6.404 17 C 0.064 3.936 18 C -0.154 4.154 19 H 0.030 0.970 20 H 0.051 0.949 21 H 0.067 0.933 22 H 0.014 0.986 23 H 0.021 0.979 24 H 0.264 0.736 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.202 -5.397 16.251 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 H 0.062 0.938 4 C -0.044 4.044 5 C -0.558 4.558 6 H 0.050 0.950 7 C -0.196 4.196 8 N -0.597 5.597 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.168 1.168 13 C -0.099 4.099 14 C -0.184 4.184 15 C -0.017 4.017 16 O -0.323 6.323 17 C -0.012 4.012 18 C -0.191 4.191 19 H 0.049 0.951 20 H 0.070 0.930 21 H 0.086 0.914 22 H 0.032 0.968 23 H 0.039 0.961 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.126 0.874 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.087 0.913 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.327 -5.302 16.217 17.219 hybrid contribution 0.035 -0.297 -1.255 1.290 sum 2.362 -5.599 14.962 16.149 Atomic orbital electron populations 1.21710 0.95345 1.01213 1.00538 1.20945 0.95882 0.98201 0.93733 0.93843 1.19634 0.96234 0.95412 0.93115 1.21519 1.34198 1.08613 0.91450 0.94999 1.26025 0.97067 1.01022 0.95533 1.70080 1.49206 1.41671 0.98708 0.85695 0.79385 0.79483 0.78327 1.19331 1.21241 1.16817 1.21215 0.94902 0.99602 0.94219 1.22267 1.01790 0.99958 0.94426 1.22726 0.80111 1.00630 0.98188 1.87864 1.21701 1.76338 1.46395 1.22645 0.99381 0.94864 0.84321 1.22285 0.96323 1.01734 0.98794 0.95082 0.92994 0.91432 0.96810 0.96057 0.92724 0.91041 0.92175 0.89460 0.92232 0.87353 0.92207 0.87896 0.91308 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 8.66 71.98 0.62 -4.12 16 2 C -0.07 -2.66 1.93 -10.79 -0.02 -2.68 16 3 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 4 C -0.01 -0.31 3.30 29.85 0.10 -0.22 16 5 C -0.52 -30.18 8.96 25.60 0.23 -29.95 16 6 H 0.03 2.05 7.30 -2.91 -0.02 2.02 16 7 C 0.00 -0.04 5.47 84.66 0.46 0.43 16 8 N -0.96 -60.95 13.96 21.45 0.30 -60.65 16 9 Si 0.95 44.78 27.47 68.60 1.88 46.67 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 12 H -0.24 -10.63 6.54 99.48 0.65 -9.98 16 13 C -0.08 -2.43 1.85 -10.68 -0.02 -2.45 16 14 C -0.15 -3.62 4.98 30.69 0.15 -3.47 16 15 C 0.06 1.27 6.84 72.02 0.49 1.77 16 16 O -0.40 -10.45 10.77 -148.98 -1.60 -12.06 16 17 C 0.06 1.55 6.84 72.01 0.49 2.04 16 18 C -0.15 -4.51 4.98 30.68 0.15 -4.36 16 19 H 0.03 1.31 6.95 -2.39 -0.02 1.29 16 20 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 21 H 0.07 1.99 6.51 -2.39 -0.02 1.97 16 22 H 0.01 0.62 7.57 -2.39 -0.02 0.61 16 23 H 0.02 0.98 5.31 -2.39 -0.01 0.97 16 24 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.09 1.91 6.63 -2.38 -0.02 1.90 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 2.15 6.51 -2.39 -0.02 2.13 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -66.24 255.14 4.25 -62.00 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.00 Total: 7.05 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 2.66 Total: -43.01 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: 0.30 Total: -60.65 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -1.60 Total: -12.06 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.67 kcal Total: -66.24 4.25 -62.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260621165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.207 kcal (2) G-P(sol) polarization free energy of solvation -66.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds