Wall clock time and date at job start Mon Mar 30 2020 02:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46887 * 2 1 4 4 C 1.52992 * 109.47259 * 119.99848 * 2 1 3 5 5 C 1.50700 * 109.47257 * 294.99935 * 4 2 1 6 6 H 1.07999 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99854 * 359.72512 * 7 5 4 10 10 H 1.48498 * 109.46909 * 90.00086 * 9 7 5 11 11 H 1.48497 * 109.46701 * 209.99996 * 9 7 5 12 12 H 1.48500 * 109.46867 * 330.00101 * 9 7 5 13 13 C 1.53004 * 109.46915 * 240.00048 * 2 1 3 14 14 C 1.53181 * 109.54022 * 179.82089 * 13 2 1 15 15 C 1.53104 * 109.15430 * 183.23945 * 14 13 2 16 16 O 1.42907 * 109.48418 * 57.47415 * 15 14 13 17 17 C 1.42902 * 114.09918 * 298.88595 * 16 15 14 18 18 C 1.53086 * 109.41343 * 61.15995 * 17 16 15 19 19 H 1.09000 * 109.46372 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.46411 * 299.99669 * 1 2 3 21 21 H 1.08998 * 109.47030 * 59.99803 * 1 2 3 22 22 H 1.09004 * 109.47330 * 174.99958 * 4 2 1 23 23 H 1.08997 * 109.47279 * 55.00444 * 4 2 1 24 24 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 25 25 H 1.08996 * 109.54347 * 299.99286 * 13 2 1 26 26 H 1.09002 * 109.52348 * 303.05222 * 14 13 2 27 27 H 1.08999 * 109.52312 * 63.24850 * 14 13 2 28 28 H 1.08993 * 109.41135 * 297.49519 * 15 14 13 29 29 H 1.09001 * 109.48121 * 177.49843 * 15 14 13 30 30 H 1.08998 * 109.47977 * 301.17284 * 17 16 15 31 31 H 1.09007 * 109.47908 * 181.14117 * 17 16 15 32 32 H 1.09000 * 109.52124 * 182.48288 * 18 17 16 33 33 H 1.09003 * 109.57472 * 62.32635 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0808 0.9747 2.3756 7 6 1.9934 -0.4016 3.7283 8 7 1.6451 0.2774 4.7994 9 14 2.9578 -1.9919 3.9031 10 1 4.4124 -1.6942 3.8758 11 1 2.6098 -2.6426 5.1918 12 1 2.6177 -2.9029 2.7807 13 6 2.0400 -0.7213 -1.2493 14 6 3.5718 -0.7183 -1.2532 15 6 4.0721 -1.3699 -2.5452 16 8 3.5400 -0.6676 -3.6703 17 6 2.1130 -0.6792 -3.7437 18 6 1.5339 0.0020 -2.5011 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 3.1264 -0.7994 1.2055 23 1 1.6055 -1.7197 1.2951 24 1 1.8930 -0.0452 5.6800 25 1 1.6774 -1.7492 -1.2504 26 1 3.9343 0.3083 -1.2005 27 1 3.9394 -1.2800 -0.3944 28 1 3.7446 -2.4089 -2.5773 29 1 5.1611 -1.3307 -2.5740 30 1 1.7598 -1.7093 -3.7915 31 1 1.7905 -0.1424 -4.6360 32 1 0.4454 -0.0448 -2.5338 33 1 1.8530 1.0440 -2.4737 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260621167.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:22 Heat of formation + Delta-G solvation = -78.029096 kcal Electronic energy + Delta-G solvation = -13167.172534 eV Core-core repulsion = 10998.720881 eV Total energy + Delta-G solvation = -2168.451653 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.32917 -36.07058 -32.72865 -31.00082 -30.92048 -27.52440 -25.07416 -23.38496 -22.23007 -20.09845 -19.04679 -16.88405 -15.83595 -15.81517 -14.84774 -14.31001 -13.87807 -13.65466 -13.10658 -12.94016 -12.46374 -12.24889 -11.74102 -11.25477 -11.18044 -11.02904 -10.87340 -10.63684 -10.33132 -10.07643 -9.81750 -9.64255 -9.50084 -9.09582 -8.93370 -8.50385 -6.01812 -3.98335 3.30605 3.38346 3.41612 4.01179 4.46707 5.00038 5.05237 5.19135 5.24527 5.32089 5.38894 5.56834 5.69307 5.77521 5.91790 6.03072 6.06878 6.14901 6.25239 6.37580 6.43858 6.52866 6.63471 6.87797 7.00327 7.10098 7.29343 7.34341 7.50790 7.83978 8.57986 9.04012 9.61362 11.11767 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048669 B = 0.009476 C = 0.008362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.179182 B = 2954.049800 C = 3347.627436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 H 0.061 0.939 4 C -0.011 4.011 5 C -0.513 4.513 6 H 0.072 0.928 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C -0.086 4.086 14 C -0.152 4.152 15 C 0.061 3.939 16 O -0.389 6.389 17 C 0.061 3.939 18 C -0.151 4.151 19 H 0.042 0.958 20 H 0.065 0.935 21 H 0.035 0.965 22 H 0.013 0.987 23 H 0.013 0.987 24 H 0.262 0.738 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.568 -3.571 -14.158 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 H 0.080 0.920 4 C -0.048 4.048 5 C -0.551 4.551 6 H 0.090 0.910 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.104 4.104 14 C -0.190 4.190 15 C -0.016 4.016 16 O -0.308 6.308 17 C -0.016 4.016 18 C -0.189 4.189 19 H 0.061 0.939 20 H 0.084 0.916 21 H 0.054 0.946 22 H 0.032 0.968 23 H 0.031 0.969 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.687 -3.485 -14.097 14.619 hybrid contribution 0.321 -0.953 0.591 1.166 sum 2.008 -4.439 -13.506 14.358 Atomic orbital electron populations 1.21768 0.96070 1.00737 1.00696 1.21023 0.95231 0.99204 0.93509 0.92038 1.19678 0.95695 0.95996 0.93399 1.21178 1.35255 1.09475 0.89227 0.90951 1.25039 0.95740 0.96879 0.95976 1.69919 1.47227 1.39374 0.98006 0.86818 0.80617 0.84616 0.77472 1.20375 1.21493 1.19073 1.21298 0.94514 0.99530 0.95095 1.22299 0.96666 1.02340 0.97670 1.22618 0.98450 0.94632 0.85900 1.87871 1.20528 1.76117 1.46286 1.22578 0.81122 0.99604 0.98262 1.22297 1.00945 1.00658 0.94970 0.93872 0.91590 0.94585 0.96838 0.96863 0.92856 0.91833 0.91108 0.90246 0.93630 0.89333 0.93647 0.89494 0.90848 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.66 37.16 0.32 -2.18 16 2 C -0.07 -1.39 1.93 -90.62 -0.17 -1.56 16 3 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 4 C -0.01 -0.25 3.31 -27.89 -0.09 -0.34 16 5 C -0.51 -14.51 8.96 -34.44 -0.31 -14.82 16 6 H 0.07 2.20 7.30 -52.49 -0.38 1.82 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.08 13.96 55.43 0.77 -27.31 16 9 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 13 C -0.09 -1.39 1.86 -90.43 -0.17 -1.55 16 14 C -0.15 -2.37 4.99 -26.58 -0.13 -2.50 16 15 C 0.06 0.82 6.84 37.21 0.25 1.07 16 16 O -0.39 -5.65 10.77 -35.23 -0.38 -6.03 16 17 C 0.06 0.76 6.84 37.20 0.25 1.02 16 18 C -0.15 -2.08 4.98 -26.60 -0.13 -2.21 16 19 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 20 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 21 H 0.04 0.56 6.51 -51.93 -0.34 0.22 16 22 H 0.01 0.31 5.69 -51.93 -0.30 0.02 16 23 H 0.01 0.32 7.19 -51.93 -0.37 -0.06 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.08 1.30 6.51 -51.93 -0.34 0.96 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 32 H 0.07 0.94 6.63 -51.93 -0.34 0.59 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 255.14 15.07 3.84 3.84 Total: -1.00 -30.37 255.14 -6.11 -36.48 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -5.41 Total: -2.84 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -0.27 Total: -21.31 kcal Atomic # 7 Polarization: -28.08 SS G_CDS: 0.77 Total: -27.31 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.38 Total: -6.03 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.37 -6.11 -36.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260621167.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.551 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds