Wall clock time and date at job start Mon Mar 30 2020 02:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46887 * 2 1 4 4 C 1.52992 * 109.47259 * 119.99848 * 2 1 3 5 5 C 1.50700 * 109.47257 * 294.99935 * 4 2 1 6 6 H 1.07999 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99854 * 359.72512 * 7 5 4 10 10 H 1.48498 * 109.46909 * 90.00086 * 9 7 5 11 11 H 1.48497 * 109.46701 * 209.99996 * 9 7 5 12 12 H 1.48500 * 109.46867 * 330.00101 * 9 7 5 13 13 C 1.53004 * 109.46915 * 240.00048 * 2 1 3 14 14 C 1.53181 * 109.54022 * 179.82089 * 13 2 1 15 15 C 1.53104 * 109.15430 * 183.23945 * 14 13 2 16 16 O 1.42907 * 109.48418 * 57.47415 * 15 14 13 17 17 C 1.42902 * 114.09918 * 298.88595 * 16 15 14 18 18 C 1.53086 * 109.41343 * 61.15995 * 17 16 15 19 19 H 1.09000 * 109.46372 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.46411 * 299.99669 * 1 2 3 21 21 H 1.08998 * 109.47030 * 59.99803 * 1 2 3 22 22 H 1.09004 * 109.47330 * 174.99958 * 4 2 1 23 23 H 1.08997 * 109.47279 * 55.00444 * 4 2 1 24 24 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 25 25 H 1.08996 * 109.54347 * 299.99286 * 13 2 1 26 26 H 1.09002 * 109.52348 * 303.05222 * 14 13 2 27 27 H 1.08999 * 109.52312 * 63.24850 * 14 13 2 28 28 H 1.08993 * 109.41135 * 297.49519 * 15 14 13 29 29 H 1.09001 * 109.48121 * 177.49843 * 15 14 13 30 30 H 1.08998 * 109.47977 * 301.17284 * 17 16 15 31 31 H 1.09007 * 109.47908 * 181.14117 * 17 16 15 32 32 H 1.09000 * 109.52124 * 182.48288 * 18 17 16 33 33 H 1.09003 * 109.57472 * 62.32635 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0808 0.9747 2.3756 7 6 1.9934 -0.4016 3.7283 8 7 1.6451 0.2774 4.7994 9 14 2.9578 -1.9919 3.9031 10 1 4.4124 -1.6942 3.8758 11 1 2.6098 -2.6426 5.1918 12 1 2.6177 -2.9029 2.7807 13 6 2.0400 -0.7213 -1.2493 14 6 3.5718 -0.7183 -1.2532 15 6 4.0721 -1.3699 -2.5452 16 8 3.5400 -0.6676 -3.6703 17 6 2.1130 -0.6792 -3.7437 18 6 1.5339 0.0020 -2.5011 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 3.1264 -0.7994 1.2055 23 1 1.6055 -1.7197 1.2951 24 1 1.8930 -0.0452 5.6800 25 1 1.6774 -1.7492 -1.2504 26 1 3.9343 0.3083 -1.2005 27 1 3.9394 -1.2800 -0.3944 28 1 3.7446 -2.4089 -2.5773 29 1 5.1611 -1.3307 -2.5740 30 1 1.7598 -1.7093 -3.7915 31 1 1.7905 -0.1424 -4.6360 32 1 0.4454 -0.0448 -2.5338 33 1 1.8530 1.0440 -2.4737 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260621167.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:22 Heat of formation + Delta-G solvation = -97.200884 kcal Electronic energy + Delta-G solvation = -13168.003885 eV Core-core repulsion = 10998.720881 eV Total energy + Delta-G solvation = -2169.283004 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.48592 -37.51093 -34.74965 -32.51415 -32.08453 -29.35258 -26.45314 -24.72087 -23.76378 -21.41512 -20.58705 -18.96390 -17.04317 -16.86105 -16.37446 -15.95231 -15.26054 -15.02885 -14.64325 -14.44453 -14.23372 -13.69196 -13.28298 -12.91621 -12.57505 -12.49405 -12.25663 -12.07755 -11.88492 -11.75419 -11.47244 -11.17362 -10.98319 -10.88185 -10.69335 -10.27826 -8.27244 -6.29168 1.34027 1.35986 1.47653 2.36406 3.03442 3.08200 3.81320 3.86012 4.01753 4.16201 4.35894 4.39369 4.53292 4.63442 4.65865 4.70097 4.84519 4.89339 5.00888 5.06515 5.08543 5.19178 5.21747 5.34626 5.39496 5.45338 5.59159 5.74378 5.76894 6.32029 6.33736 6.78568 7.34221 8.89722 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048669 B = 0.009476 C = 0.008362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.179182 B = 2954.049800 C = 3347.627436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.069 4.069 3 H 0.043 0.957 4 C -0.007 4.007 5 C -0.520 4.520 6 H 0.032 0.968 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.947 3.053 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.246 1.246 13 C -0.081 4.081 14 C -0.154 4.154 15 C 0.064 3.936 16 O -0.404 6.404 17 C 0.060 3.940 18 C -0.147 4.147 19 H 0.051 0.949 20 H 0.030 0.970 21 H 0.067 0.933 22 H 0.019 0.981 23 H 0.015 0.985 24 H 0.264 0.736 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.183 -5.407 -16.234 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 H 0.062 0.938 4 C -0.044 4.044 5 C -0.558 4.558 6 H 0.050 0.950 7 C -0.196 4.196 8 N -0.597 5.597 9 Si 0.771 3.229 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.169 1.169 13 C -0.099 4.099 14 C -0.192 4.192 15 C -0.012 4.012 16 O -0.323 6.323 17 C -0.016 4.016 18 C -0.184 4.184 19 H 0.070 0.930 20 H 0.049 0.951 21 H 0.086 0.914 22 H 0.038 0.962 23 H 0.033 0.967 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.105 0.895 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.298 -5.318 -16.199 17.204 hybrid contribution 0.069 -0.276 1.248 1.280 sum 2.368 -5.595 -14.951 16.138 Atomic orbital electron populations 1.21707 0.95355 1.01187 1.00543 1.20946 0.95889 0.98202 0.93732 0.93825 1.19630 0.96034 0.95592 0.93116 1.21520 1.34248 1.08562 0.91454 0.94992 1.26026 0.97105 1.00971 0.95534 1.70081 1.49156 1.41709 0.98715 0.85702 0.79219 0.79964 0.78046 1.19237 1.21223 1.16906 1.21214 0.94951 0.99564 0.94214 1.22293 0.96278 1.01783 0.98818 1.22644 0.99370 0.94875 0.84335 1.87864 1.21677 1.76390 1.46371 1.22726 0.80119 1.00609 0.98191 1.22262 1.01790 0.99959 0.94432 0.93036 0.95073 0.91420 0.96243 0.96660 0.92720 0.91108 0.92350 0.91182 0.92248 0.87860 0.92235 0.87358 0.89509 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 8.66 71.98 0.62 -4.12 16 2 C -0.07 -2.66 1.93 -10.79 -0.02 -2.68 16 3 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 4 C -0.01 -0.30 3.31 29.85 0.10 -0.20 16 5 C -0.52 -30.18 8.96 25.60 0.23 -29.95 16 6 H 0.03 2.05 7.30 -2.91 -0.02 2.03 16 7 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 8 N -0.96 -60.94 13.96 21.45 0.30 -60.64 16 9 Si 0.95 44.77 27.47 68.60 1.88 46.65 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 13 C -0.08 -2.43 1.86 -10.67 -0.02 -2.45 16 14 C -0.15 -4.50 4.99 30.69 0.15 -4.34 16 15 C 0.06 1.54 6.84 72.02 0.49 2.03 16 16 O -0.40 -10.44 10.77 -148.98 -1.60 -12.05 16 17 C 0.06 1.28 6.84 72.01 0.49 1.77 16 18 C -0.15 -3.63 4.98 30.68 0.15 -3.47 16 19 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 20 H 0.03 1.31 6.95 -2.39 -0.02 1.30 16 21 H 0.07 1.99 6.51 -2.39 -0.02 1.98 16 22 H 0.02 0.88 5.69 -2.38 -0.01 0.87 16 23 H 0.02 0.70 7.19 -2.39 -0.02 0.68 16 24 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 2.15 6.51 -2.39 -0.02 2.14 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.10 2.14 8.14 -2.39 -0.02 2.13 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.09 1.91 6.63 -2.39 -0.02 1.89 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -66.25 255.14 4.25 -62.00 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.00 Total: 7.02 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 2.66 Total: -42.99 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.30 Total: -60.64 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -1.60 Total: -12.05 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -66.25 4.25 -62.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260621167.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.201 kcal (2) G-P(sol) polarization free energy of solvation -66.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds