Wall clock time and date at job start Mon Mar 30 2020 02:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86800 * 120.00330 * 2 1 4 4 H 1.48497 * 109.47532 * 269.99954 * 3 2 1 5 5 H 1.48508 * 109.47047 * 30.00131 * 3 2 1 6 6 H 1.48503 * 109.47103 * 149.99590 * 3 2 1 7 7 C 1.37882 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00390 * 185.52326 * 7 2 1 9 9 C 1.50703 * 119.99507 * 5.51308 * 7 2 1 10 10 H 1.09003 * 109.47288 * 5.15286 * 9 7 2 11 11 C 1.53008 * 109.47059 * 245.15251 * 9 7 2 12 12 N 1.46900 * 109.47148 * 63.63944 * 11 9 7 13 13 C 1.52998 * 109.47107 * 125.15593 * 9 7 2 14 14 H 1.08993 * 109.53652 * 60.09498 * 13 9 7 15 15 C 1.53115 * 109.50264 * 180.19742 * 13 9 7 16 16 C 1.53123 * 109.15952 * 177.59575 * 15 13 9 17 17 C 1.53042 * 109.27553 * 302.34281 * 16 15 13 18 18 N 1.46842 * 109.52373 * 59.18008 * 17 16 15 19 19 C 1.46851 * 111.19972 * 298.25831 * 18 17 16 20 20 H 0.97010 * 119.99729 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46895 * 183.63327 * 11 9 7 22 22 H 1.08997 * 109.46932 * 303.63675 * 11 9 7 23 23 H 1.00897 * 111.00415 * 56.04061 * 12 11 9 24 24 H 1.00900 * 111.00049 * 180.02562 * 12 11 9 25 25 H 1.08996 * 109.52410 * 297.49807 * 15 13 9 26 26 H 1.09002 * 109.52831 * 57.62802 * 15 13 9 27 27 H 1.08996 * 109.50689 * 62.28563 * 16 15 13 28 28 H 1.09002 * 109.50431 * 182.40311 * 16 15 13 29 29 H 1.09000 * 109.46474 * 179.19704 * 17 16 15 30 30 H 1.09004 * 109.46140 * 299.16588 * 17 16 15 31 31 H 1.00904 * 110.99850 * 174.16230 * 18 17 16 32 32 H 1.09000 * 109.46102 * 301.72811 * 19 18 17 33 33 H 1.08993 * 109.46483 * 181.75870 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0807 -1.1963 0.0895 9 6 1.2561 -2.4961 -0.1265 10 1 0.1990 -2.2925 -0.2977 11 6 1.4177 -3.3040 1.1628 12 7 0.7999 -2.5747 2.2783 13 6 1.8186 -3.2958 -1.3033 14 1 2.8753 -3.5014 -1.1324 15 6 1.0555 -4.6167 -1.4350 16 6 1.5840 -5.3833 -2.6506 17 6 1.4295 -4.5153 -3.9016 18 7 2.1780 -3.2642 -3.7262 19 6 1.6574 -2.4883 -2.5933 20 1 -0.4850 0.8402 -0.0004 21 1 0.9309 -4.2725 1.0480 22 1 2.4778 -3.4522 1.3682 23 1 -0.1683 -2.3682 2.0834 24 1 0.8938 -3.0879 3.1420 25 1 1.2032 -5.2140 -0.5353 26 1 -0.0071 -4.4121 -1.5660 27 1 2.6369 -5.6219 -2.5009 28 1 1.0155 -6.3051 -2.7748 29 1 1.8180 -5.0527 -4.7667 30 1 0.3749 -4.2887 -4.0584 31 1 2.1703 -2.7164 -4.5736 32 1 0.6018 -2.2712 -2.7563 33 1 2.2113 -1.5535 -2.5082 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260635486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:58 Heat of formation + Delta-G solvation = -17.166422 kcal Electronic energy + Delta-G solvation = -13413.301811 eV Core-core repulsion = 11279.782113 eV Total energy + Delta-G solvation = -2133.519699 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.22148 -34.92093 -32.02068 -31.44639 -30.54459 -26.79626 -24.29670 -22.98743 -21.71321 -19.73577 -18.70273 -16.30514 -15.94241 -14.49022 -14.29737 -14.09264 -13.60242 -13.25660 -13.18051 -12.60492 -12.31368 -12.09166 -11.72924 -11.06038 -10.82119 -10.66860 -10.53213 -10.32640 -10.02102 -9.77747 -9.46012 -8.81640 -8.74037 -8.27257 -7.86555 -7.34042 -5.83946 -3.79638 3.40507 3.47646 3.52317 4.59182 4.79986 5.36383 5.44747 5.49185 5.62426 5.78679 5.90575 6.05769 6.17089 6.27338 6.38575 6.41332 6.60163 6.61841 6.65029 6.70559 7.12256 7.15934 7.21473 7.45344 7.72168 7.93936 7.95845 8.08383 8.35345 8.60848 8.64105 9.24521 9.79779 11.26550 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033516 B = 0.013063 C = 0.010273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.229662 B = 2142.998826 C = 2724.937168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.480 4.480 8 H 0.047 0.953 9 C 0.034 3.966 10 H 0.064 0.936 11 C 0.078 3.922 12 N -0.826 5.826 13 C -0.068 4.068 14 H 0.056 0.944 15 C -0.120 4.120 16 C -0.116 4.116 17 C 0.060 3.940 18 N -0.697 5.697 19 C 0.079 3.921 20 H 0.255 0.745 21 H -0.012 1.012 22 H 0.045 0.955 23 H 0.338 0.662 24 H 0.310 0.690 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.022 0.978 31 H 0.331 0.669 32 H 0.022 0.978 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 -7.612 -4.115 8.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.711 3.289 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.518 4.518 8 H 0.066 0.934 9 C 0.015 3.985 10 H 0.082 0.918 11 C -0.053 4.053 12 N -0.353 5.353 13 C -0.088 4.088 14 H 0.075 0.925 15 C -0.158 4.158 16 C -0.154 4.154 17 C -0.070 4.070 18 N -0.327 5.327 19 C -0.049 4.049 20 H 0.065 0.935 21 H 0.006 0.994 22 H 0.064 0.936 23 H 0.151 0.849 24 H 0.120 0.880 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.148 0.852 32 H 0.040 0.960 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.398 -7.205 -3.903 8.313 hybrid contribution -1.026 0.466 -0.263 1.157 sum 0.372 -6.739 -4.166 7.931 Atomic orbital electron populations 1.69881 1.05782 1.25874 1.51915 1.24787 0.94621 0.98516 0.94865 0.86763 0.80118 0.84374 0.77614 1.21169 1.21651 1.20108 1.20778 0.92637 0.90069 1.48340 0.93444 1.18996 0.99367 0.92728 0.87451 0.91787 1.21973 0.96885 0.92265 0.94129 1.58401 1.22511 1.50857 1.03566 1.21239 0.98942 0.92683 0.95938 0.92514 1.21781 0.99603 0.97824 0.96587 1.21586 1.01275 0.97156 0.95335 1.21843 0.95301 0.92185 0.97634 1.60412 1.57157 1.07004 1.08120 1.21857 0.97260 0.96567 0.89235 0.93506 0.99380 0.93647 0.84910 0.88012 0.92571 0.93097 0.91759 0.92900 0.92102 0.96015 0.85210 0.95984 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.40 12.64 55.43 0.70 -24.70 16 2 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 3 Si 0.88 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.48 -12.92 6.76 -34.44 -0.23 -13.15 16 8 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 9 C 0.03 0.82 1.83 -91.77 -0.17 0.65 16 10 H 0.06 1.72 6.96 -51.93 -0.36 1.36 16 11 C 0.08 1.71 5.93 -3.82 -0.02 1.69 16 12 N -0.83 -17.78 9.30 -10.37 -0.10 -17.88 16 13 C -0.07 -1.43 1.93 -90.54 -0.17 -1.61 16 14 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.12 -2.17 4.87 -26.61 -0.13 -2.30 16 16 C -0.12 -1.80 6.09 -26.65 -0.16 -1.96 16 17 C 0.06 0.93 6.55 -3.83 -0.03 0.90 16 18 N -0.70 -12.10 6.85 -113.81 -0.78 -12.88 16 19 C 0.08 1.64 5.57 -3.83 -0.02 1.62 16 20 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 21 H -0.01 -0.23 6.30 -51.93 -0.33 -0.56 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.34 7.44 8.99 -39.29 -0.35 7.09 16 24 H 0.31 5.61 9.08 -39.29 -0.36 5.25 16 25 H 0.06 0.98 6.50 -51.93 -0.34 0.64 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.33 5.08 8.90 -39.29 -0.35 4.73 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.95 7.25 -51.93 -0.38 1.58 16 LS Contribution 259.87 15.07 3.92 3.92 Total: -1.00 -28.28 259.87 -7.70 -35.98 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.39 Total: 11.06 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -1.03 Total: -12.26 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.18 Total: -55.46 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.28 -7.70 -35.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.815 kcal (2) G-P(sol) polarization free energy of solvation -28.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds