Wall clock time and date at job start Mon Mar 30 2020 02:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86800 * 120.00330 * 2 1 4 4 H 1.48497 * 109.47532 * 269.99954 * 3 2 1 5 5 H 1.48508 * 109.47047 * 30.00131 * 3 2 1 6 6 H 1.48503 * 109.47103 * 149.99590 * 3 2 1 7 7 C 1.37882 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00390 * 185.52326 * 7 2 1 9 9 C 1.50703 * 119.99507 * 5.51308 * 7 2 1 10 10 H 1.09003 * 109.47288 * 5.15286 * 9 7 2 11 11 C 1.53008 * 109.47059 * 245.15251 * 9 7 2 12 12 N 1.46900 * 109.47148 * 63.63944 * 11 9 7 13 13 C 1.52998 * 109.47107 * 125.15593 * 9 7 2 14 14 H 1.08993 * 109.53652 * 60.09498 * 13 9 7 15 15 C 1.53115 * 109.50264 * 180.19742 * 13 9 7 16 16 C 1.53123 * 109.15952 * 177.59575 * 15 13 9 17 17 C 1.53042 * 109.27553 * 302.34281 * 16 15 13 18 18 N 1.46842 * 109.52373 * 59.18008 * 17 16 15 19 19 C 1.46851 * 111.19972 * 298.25831 * 18 17 16 20 20 H 0.97010 * 119.99729 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46895 * 183.63327 * 11 9 7 22 22 H 1.08997 * 109.46932 * 303.63675 * 11 9 7 23 23 H 1.00897 * 111.00415 * 56.04061 * 12 11 9 24 24 H 1.00900 * 111.00049 * 180.02562 * 12 11 9 25 25 H 1.08996 * 109.52410 * 297.49807 * 15 13 9 26 26 H 1.09002 * 109.52831 * 57.62802 * 15 13 9 27 27 H 1.08996 * 109.50689 * 62.28563 * 16 15 13 28 28 H 1.09002 * 109.50431 * 182.40311 * 16 15 13 29 29 H 1.09000 * 109.46474 * 179.19704 * 17 16 15 30 30 H 1.09004 * 109.46140 * 299.16588 * 17 16 15 31 31 H 1.00904 * 110.99850 * 174.16230 * 18 17 16 32 32 H 1.09000 * 109.46102 * 301.72811 * 19 18 17 33 33 H 1.08993 * 109.46483 * 181.75870 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0807 -1.1963 0.0895 9 6 1.2561 -2.4961 -0.1265 10 1 0.1990 -2.2925 -0.2977 11 6 1.4177 -3.3040 1.1628 12 7 0.7999 -2.5747 2.2783 13 6 1.8186 -3.2958 -1.3033 14 1 2.8753 -3.5014 -1.1324 15 6 1.0555 -4.6167 -1.4350 16 6 1.5840 -5.3833 -2.6506 17 6 1.4295 -4.5153 -3.9016 18 7 2.1780 -3.2642 -3.7262 19 6 1.6574 -2.4883 -2.5933 20 1 -0.4850 0.8402 -0.0004 21 1 0.9309 -4.2725 1.0480 22 1 2.4778 -3.4522 1.3682 23 1 -0.1683 -2.3682 2.0834 24 1 0.8938 -3.0879 3.1420 25 1 1.2032 -5.2140 -0.5353 26 1 -0.0071 -4.4121 -1.5660 27 1 2.6369 -5.6219 -2.5009 28 1 1.0155 -6.3051 -2.7748 29 1 1.8180 -5.0527 -4.7667 30 1 0.3749 -4.2887 -4.0584 31 1 2.1703 -2.7164 -4.5736 32 1 0.6018 -2.2712 -2.7563 33 1 2.2113 -1.5535 -2.5082 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260635486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:58 Heat of formation + Delta-G solvation = -38.442117 kcal Electronic energy + Delta-G solvation = -13414.224395 eV Core-core repulsion = 11279.782113 eV Total energy + Delta-G solvation = -2134.442282 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.76908 -36.63772 -34.01886 -32.98591 -32.10740 -28.58779 -26.19409 -24.53747 -23.25086 -21.41675 -20.33901 -18.36568 -17.40783 -16.42436 -16.07726 -15.53180 -15.23203 -14.97398 -14.67012 -14.16003 -14.04854 -13.71167 -13.38851 -12.83984 -12.70394 -12.51579 -12.16888 -12.02545 -11.65588 -11.48809 -11.04933 -10.80014 -10.56453 -10.35600 -9.30908 -9.04961 -7.95178 -5.94687 1.42177 1.45048 1.53014 2.53715 3.36210 3.41900 4.08464 4.09165 4.16539 4.20912 4.42635 4.64273 4.70897 4.80610 4.81563 4.91477 4.96348 5.13280 5.18424 5.22577 5.34288 5.47325 5.54865 5.74798 5.81963 6.02849 6.23219 6.50022 6.61695 6.71147 6.99410 7.16355 7.65820 9.13911 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033516 B = 0.013063 C = 0.010273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.229662 B = 2142.998826 C = 2724.937168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.031 3.969 3 Si 0.931 3.069 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.484 4.484 8 H 0.032 0.968 9 C 0.035 3.965 10 H 0.033 0.967 11 C 0.084 3.916 12 N -0.840 5.840 13 C -0.064 4.064 14 H 0.047 0.953 15 C -0.115 4.115 16 C -0.112 4.112 17 C 0.056 3.944 18 N -0.696 5.696 19 C 0.091 3.909 20 H 0.253 0.747 21 H 0.012 0.988 22 H 0.041 0.959 23 H 0.335 0.665 24 H 0.331 0.669 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.020 0.980 31 H 0.344 0.656 32 H 0.001 0.999 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.953 -8.967 -4.722 10.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.167 4.167 3 Si 0.759 3.241 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.016 3.984 10 H 0.051 0.949 11 C -0.047 4.047 12 N -0.369 5.369 13 C -0.084 4.084 14 H 0.065 0.935 15 C -0.153 4.153 16 C -0.149 4.149 17 C -0.073 4.073 18 N -0.328 5.328 19 C -0.038 4.038 20 H 0.062 0.938 21 H 0.029 0.971 22 H 0.060 0.940 23 H 0.147 0.853 24 H 0.142 0.858 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.039 0.961 31 H 0.161 0.839 32 H 0.019 0.981 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.852 -8.572 -4.514 9.864 hybrid contribution -1.142 0.854 -0.077 1.428 sum 0.710 -7.718 -4.592 9.009 Atomic orbital electron populations 1.69988 1.06652 1.26120 1.53134 1.25319 0.95270 1.00942 0.95175 0.85994 0.78936 0.81506 0.77689 1.20578 1.21664 1.20215 1.20966 0.92000 0.91694 1.47551 0.94919 1.18932 0.97079 0.92569 0.89851 0.94901 1.21824 0.96896 0.92899 0.93069 1.58336 1.22244 1.51746 1.04581 1.21093 0.98479 0.94065 0.94780 0.93475 1.21699 0.98596 0.96391 0.98601 1.21588 1.01677 0.97886 0.93792 1.21995 0.95198 0.91173 0.98903 1.60368 1.57142 1.07559 1.07699 1.21554 0.95453 0.95988 0.90842 0.93794 0.97050 0.94024 0.85321 0.85753 0.91730 0.93959 0.91620 0.89878 0.88958 0.96147 0.83863 0.98113 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.96 12.64 21.45 0.27 -52.68 16 2 C 0.03 1.72 5.45 84.66 0.46 2.18 16 3 Si 0.93 45.11 29.54 68.60 2.03 47.14 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.48 -26.38 6.76 25.60 0.17 -26.21 16 8 H 0.03 1.84 7.82 -2.91 -0.02 1.82 16 9 C 0.04 1.70 1.83 -11.54 -0.02 1.68 16 10 H 0.03 1.79 6.96 -2.39 -0.02 1.78 16 11 C 0.08 3.59 5.93 86.31 0.51 4.11 16 12 N -0.84 -35.63 9.30 -186.71 -1.74 -37.37 16 13 C -0.06 -2.69 1.93 -10.74 -0.02 -2.71 16 14 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 15 C -0.12 -3.95 4.87 30.67 0.15 -3.80 16 16 C -0.11 -3.11 6.09 30.65 0.19 -2.92 16 17 C 0.06 1.57 6.55 86.33 0.57 2.13 16 18 N -0.70 -23.13 6.85 -514.00 -3.52 -26.65 16 19 C 0.09 3.79 5.57 86.33 0.48 4.27 16 20 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 21 H 0.01 0.44 6.30 -2.39 -0.02 0.43 16 22 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.33 14.68 8.99 -89.70 -0.81 13.87 16 24 H 0.33 11.52 9.08 -89.69 -0.81 10.70 16 25 H 0.06 2.09 6.50 -2.39 -0.02 2.07 16 26 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.34 9.99 8.90 -89.69 -0.80 9.19 16 32 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.06 2.64 7.25 -2.39 -0.02 2.62 16 Total: -1.00 -60.04 259.87 -1.78 -61.83 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -1.31 Total: 29.00 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 2.49 Total: -21.26 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -4.98 Total: -116.70 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -60.04 -1.78 -61.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.385 kcal (2) G-P(sol) polarization free energy of solvation -60.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds