Wall clock time and date at job start Mon Mar 30 2020 02:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99897 * 2 1 4 4 H 1.48497 * 109.46972 * 274.99666 * 3 2 1 5 5 H 1.48498 * 109.47115 * 35.00254 * 3 2 1 6 6 H 1.48508 * 109.46882 * 154.99993 * 3 2 1 7 7 C 1.37874 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00495 * 175.30517 * 7 2 1 9 9 C 1.50702 * 120.00096 * 355.30505 * 7 2 1 10 10 H 1.09001 * 109.46933 * 305.31871 * 9 7 2 11 11 C 1.53002 * 109.46752 * 65.31286 * 9 7 2 12 12 N 1.46901 * 109.47122 * 183.59635 * 11 9 7 13 13 C 1.52994 * 109.47481 * 185.31384 * 9 7 2 14 14 H 1.08998 * 109.50153 * 180.82911 * 13 9 7 15 15 C 1.53117 * 109.50536 * 60.74596 * 13 9 7 16 16 C 1.53117 * 109.21586 * 182.33426 * 15 13 9 17 17 C 1.53168 * 109.20642 * 57.62511 * 16 15 13 18 18 N 1.46845 * 109.56074 * 300.86467 * 17 16 15 19 19 C 1.46843 * 111.20056 * 61.73728 * 18 17 16 20 20 H 0.97007 * 120.00060 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.47382 * 303.58970 * 11 9 7 22 22 H 1.09001 * 109.47292 * 63.59137 * 11 9 7 23 23 H 1.00902 * 110.99944 * 56.04332 * 12 11 9 24 24 H 1.00898 * 111.00062 * 180.02562 * 12 11 9 25 25 H 1.09004 * 109.52454 * 302.27577 * 15 13 9 26 26 H 1.09005 * 109.51911 * 62.39392 * 15 13 9 27 27 H 1.08999 * 109.50091 * 177.62785 * 16 15 13 28 28 H 1.08996 * 109.50029 * 297.75079 * 16 15 13 29 29 H 1.08999 * 109.44673 * 180.83064 * 17 16 15 30 30 H 1.09009 * 109.43552 * 60.88200 * 17 16 15 31 31 H 1.00901 * 111.00191 * 185.84402 * 18 17 16 32 32 H 1.09006 * 109.46599 * 178.24571 * 19 18 17 33 33 H 1.09001 * 109.46009 * 58.27754 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3909 2.1074 -1.3947 5 1 1.5034 2.6199 0.8031 6 1 3.5955 1.4120 0.5917 7 6 2.0045 -1.1940 -0.0005 8 1 3.0817 -1.1956 -0.0771 9 6 1.2548 -2.4970 0.1057 10 1 0.6198 -2.4797 0.9915 11 6 0.3873 -2.6892 -1.1399 12 7 -0.4082 -3.9160 -0.9980 13 6 2.2523 -3.6519 0.2157 14 1 1.7108 -4.5957 0.2778 15 6 3.1084 -3.4700 1.4721 16 6 4.1425 -4.5969 1.5447 17 6 4.9950 -4.5812 0.2723 18 7 4.1303 -4.7593 -0.9011 19 6 3.1597 -3.6635 -1.0167 20 1 -0.4850 0.8401 0.0004 21 1 -0.2798 -1.8347 -1.2535 22 1 1.0267 -2.7704 -2.0190 23 1 -0.9619 -3.8924 -0.1547 24 1 -0.9899 -4.0656 -1.8088 25 1 3.6199 -2.5085 1.4283 26 1 2.4706 -3.5034 2.3554 27 1 4.7819 -4.4485 2.4149 28 1 3.6307 -5.5556 1.6276 29 1 5.7231 -5.3914 0.3132 30 1 5.5171 -3.6272 0.1972 31 1 4.6780 -4.8476 -1.7439 32 1 2.5545 -3.8071 -1.9119 33 1 3.6905 -2.7139 -1.0858 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260635488.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:00 Heat of formation + Delta-G solvation = -18.918922 kcal Electronic energy + Delta-G solvation = -13497.582489 eV Core-core repulsion = 11363.986797 eV Total energy + Delta-G solvation = -2133.595693 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.24089 -34.91999 -32.12352 -31.43170 -30.41950 -26.77726 -24.02747 -22.91038 -22.24922 -19.61610 -18.57051 -16.20943 -15.92812 -14.65172 -14.28804 -13.91151 -13.56467 -13.21892 -13.10241 -12.82282 -12.10752 -11.91651 -11.66144 -11.07655 -10.99890 -10.70275 -10.44128 -10.25497 -10.04250 -9.95694 -9.15133 -8.98582 -8.73206 -8.36297 -7.77849 -7.49534 -5.99911 -4.04663 3.27428 3.35406 3.38604 4.42395 4.83506 5.28265 5.50011 5.58291 5.75029 5.82946 6.02504 6.14527 6.27834 6.32496 6.52060 6.64617 6.73775 6.79432 6.90442 7.06716 7.17282 7.28745 7.46570 7.57425 7.70525 7.89729 7.98564 8.04364 8.21249 8.43612 8.55015 9.01344 9.59506 11.05222 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031222 B = 0.013496 C = 0.010807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.595240 B = 2074.137261 C = 2590.362507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.504 4.504 8 H 0.057 0.943 9 C 0.058 3.942 10 H 0.025 0.975 11 C 0.061 3.939 12 N -0.857 5.857 13 C -0.061 4.061 14 H 0.062 0.938 15 C -0.111 4.111 16 C -0.117 4.117 17 C 0.062 3.938 18 N -0.695 5.695 19 C 0.071 3.929 20 H 0.258 0.742 21 H 0.054 0.946 22 H 0.043 0.957 23 H 0.328 0.672 24 H 0.317 0.683 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.023 0.977 31 H 0.329 0.671 32 H 0.068 0.932 33 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.800 -5.830 -0.303 7.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.038 3.962 10 H 0.043 0.957 11 C -0.069 4.069 12 N -0.383 5.383 13 C -0.080 4.080 14 H 0.080 0.920 15 C -0.149 4.149 16 C -0.155 4.155 17 C -0.068 4.068 18 N -0.325 5.325 19 C -0.057 4.057 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.139 0.861 24 H 0.126 0.874 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.145 0.855 32 H 0.086 0.914 33 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.934 -6.473 0.060 8.139 hybrid contribution 0.185 2.448 -0.407 2.488 sum 5.119 -4.025 -0.347 6.521 Atomic orbital electron populations 1.69901 1.05890 1.26252 1.51102 1.24992 0.94782 0.98990 0.95308 0.86687 0.80072 0.84030 0.77862 1.20932 1.21284 1.19946 1.21231 0.93103 0.90492 1.49457 0.92451 1.18668 0.92286 0.91586 0.93639 0.95668 1.22081 0.96326 0.88894 0.99573 1.59046 1.30970 1.42235 1.06065 1.21000 0.95366 0.99673 0.91911 0.91960 1.21601 0.97019 0.97583 0.98654 1.21638 0.97991 1.00175 0.95700 1.21853 0.94395 0.98566 0.91991 1.60376 1.19377 1.47811 1.04930 1.22021 0.93470 0.90530 0.99721 0.93191 0.92760 0.93856 0.86126 0.87395 0.91646 0.93102 0.92928 0.92054 0.92245 0.95906 0.85526 0.91392 0.94759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 11.52 55.43 0.64 -24.40 16 2 C 0.06 1.63 5.35 -17.82 -0.10 1.53 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.50 -13.27 6.99 -34.44 -0.24 -13.51 16 8 H 0.06 1.51 5.70 -52.49 -0.30 1.21 16 9 C 0.06 1.40 1.71 -91.77 -0.16 1.24 16 10 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 11 C 0.06 1.42 5.82 -3.82 -0.02 1.40 16 12 N -0.86 -16.93 9.00 -10.37 -0.09 -17.02 16 13 C -0.06 -1.29 2.04 -90.54 -0.19 -1.47 16 14 H 0.06 1.38 7.69 -51.93 -0.40 0.98 16 15 C -0.11 -2.21 5.08 -26.61 -0.14 -2.34 16 16 C -0.12 -1.95 6.11 -26.58 -0.16 -2.12 16 17 C 0.06 0.98 6.55 -3.77 -0.02 0.96 16 18 N -0.69 -11.95 6.85 -113.74 -0.78 -12.73 16 19 C 0.07 1.41 5.24 -3.83 -0.02 1.39 16 20 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 21 H 0.05 1.42 6.25 -51.93 -0.32 1.09 16 22 H 0.04 1.01 6.29 -51.93 -0.33 0.68 16 23 H 0.33 6.36 8.99 -39.29 -0.35 6.01 16 24 H 0.32 5.54 9.08 -39.29 -0.36 5.18 16 25 H 0.06 1.40 6.72 -51.93 -0.35 1.06 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.33 4.89 8.90 -39.29 -0.35 4.54 16 32 H 0.07 1.40 6.42 -51.93 -0.33 1.07 16 33 H 0.03 0.74 6.44 -51.93 -0.33 0.41 16 LS Contribution 252.75 15.07 3.81 3.81 Total: -1.00 -27.44 252.75 -7.59 -35.03 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -5.10 Total: 12.19 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -1.04 Total: -12.92 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.23 Total: -54.15 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.44 -7.59 -35.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635488.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.110 kcal (2) G-P(sol) polarization free energy of solvation -27.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds