Wall clock time and date at job start Mon Mar 30 2020 02:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99897 * 2 1 4 4 H 1.48497 * 109.46972 * 274.99666 * 3 2 1 5 5 H 1.48498 * 109.47115 * 35.00254 * 3 2 1 6 6 H 1.48508 * 109.46882 * 154.99993 * 3 2 1 7 7 C 1.37874 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00495 * 175.30517 * 7 2 1 9 9 C 1.50702 * 120.00096 * 355.30505 * 7 2 1 10 10 H 1.09001 * 109.46933 * 305.31871 * 9 7 2 11 11 C 1.53002 * 109.46752 * 65.31286 * 9 7 2 12 12 N 1.46901 * 109.47122 * 183.59635 * 11 9 7 13 13 C 1.52994 * 109.47481 * 185.31384 * 9 7 2 14 14 H 1.08998 * 109.50153 * 180.82911 * 13 9 7 15 15 C 1.53117 * 109.50536 * 60.74596 * 13 9 7 16 16 C 1.53117 * 109.21586 * 182.33426 * 15 13 9 17 17 C 1.53168 * 109.20642 * 57.62511 * 16 15 13 18 18 N 1.46845 * 109.56074 * 300.86467 * 17 16 15 19 19 C 1.46843 * 111.20056 * 61.73728 * 18 17 16 20 20 H 0.97007 * 120.00060 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.47382 * 303.58970 * 11 9 7 22 22 H 1.09001 * 109.47292 * 63.59137 * 11 9 7 23 23 H 1.00902 * 110.99944 * 56.04332 * 12 11 9 24 24 H 1.00898 * 111.00062 * 180.02562 * 12 11 9 25 25 H 1.09004 * 109.52454 * 302.27577 * 15 13 9 26 26 H 1.09005 * 109.51911 * 62.39392 * 15 13 9 27 27 H 1.08999 * 109.50091 * 177.62785 * 16 15 13 28 28 H 1.08996 * 109.50029 * 297.75079 * 16 15 13 29 29 H 1.08999 * 109.44673 * 180.83064 * 17 16 15 30 30 H 1.09009 * 109.43552 * 60.88200 * 17 16 15 31 31 H 1.00901 * 111.00191 * 185.84402 * 18 17 16 32 32 H 1.09006 * 109.46599 * 178.24571 * 19 18 17 33 33 H 1.09001 * 109.46009 * 58.27754 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3909 2.1074 -1.3947 5 1 1.5034 2.6199 0.8031 6 1 3.5955 1.4120 0.5917 7 6 2.0045 -1.1940 -0.0005 8 1 3.0817 -1.1956 -0.0771 9 6 1.2548 -2.4970 0.1057 10 1 0.6198 -2.4797 0.9915 11 6 0.3873 -2.6892 -1.1399 12 7 -0.4082 -3.9160 -0.9980 13 6 2.2523 -3.6519 0.2157 14 1 1.7108 -4.5957 0.2778 15 6 3.1084 -3.4700 1.4721 16 6 4.1425 -4.5969 1.5447 17 6 4.9950 -4.5812 0.2723 18 7 4.1303 -4.7593 -0.9011 19 6 3.1597 -3.6635 -1.0167 20 1 -0.4850 0.8401 0.0004 21 1 -0.2798 -1.8347 -1.2535 22 1 1.0267 -2.7704 -2.0190 23 1 -0.9619 -3.8924 -0.1547 24 1 -0.9899 -4.0656 -1.8088 25 1 3.6199 -2.5085 1.4283 26 1 2.4706 -3.5034 2.3554 27 1 4.7819 -4.4485 2.4149 28 1 3.6307 -5.5556 1.6276 29 1 5.7231 -5.3914 0.3132 30 1 5.5171 -3.6272 0.1972 31 1 4.6780 -4.8476 -1.7439 32 1 2.5545 -3.8071 -1.9119 33 1 3.6905 -2.7139 -1.0858 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260635488.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:59 Heat of formation + Delta-G solvation = -39.498057 kcal Electronic energy + Delta-G solvation = -13498.474867 eV Core-core repulsion = 11363.986797 eV Total energy + Delta-G solvation = -2134.488071 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.84473 -36.65442 -34.09378 -33.01859 -31.98470 -28.59383 -25.96806 -24.49149 -23.83994 -21.24585 -20.36975 -18.11836 -17.45266 -16.57128 -16.05758 -15.36446 -15.23712 -14.99332 -14.74155 -14.36116 -13.84858 -13.54537 -13.38890 -12.90686 -12.72655 -12.53345 -12.16696 -12.06873 -11.66352 -11.64172 -10.90019 -10.75721 -10.60625 -10.38570 -9.27317 -9.21501 -8.06500 -6.17367 1.37884 1.40658 1.49532 2.43071 3.19233 3.47598 4.08475 4.14658 4.20830 4.26580 4.49671 4.67172 4.78670 4.88875 4.93580 5.04438 5.12695 5.15343 5.22020 5.30624 5.49640 5.54051 5.59284 5.70809 5.96274 5.98863 6.22538 6.38933 6.58388 6.68399 6.79917 7.00692 7.49152 8.96901 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031222 B = 0.013496 C = 0.010807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.595240 B = 2074.137261 C = 2590.362507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.944 3.056 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.059 3.941 10 H -0.009 1.009 11 C 0.075 3.925 12 N -0.846 5.846 13 C -0.054 4.054 14 H 0.056 0.944 15 C -0.110 4.110 16 C -0.112 4.112 17 C 0.060 3.940 18 N -0.693 5.693 19 C 0.083 3.917 20 H 0.257 0.743 21 H 0.023 0.977 22 H 0.041 0.959 23 H 0.332 0.668 24 H 0.333 0.667 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.019 0.981 31 H 0.345 0.655 32 H 0.060 0.940 33 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.244 -6.683 -0.396 9.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.040 3.960 10 H 0.009 0.991 11 C -0.056 4.056 12 N -0.374 5.374 13 C -0.072 4.072 14 H 0.074 0.926 15 C -0.148 4.148 16 C -0.149 4.149 17 C -0.070 4.070 18 N -0.325 5.325 19 C -0.046 4.046 20 H 0.066 0.934 21 H 0.041 0.959 22 H 0.059 0.941 23 H 0.143 0.857 24 H 0.145 0.855 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.037 0.963 31 H 0.163 0.837 32 H 0.078 0.922 33 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 6.390 -7.345 -0.045 9.736 hybrid contribution -0.286 2.662 -0.369 2.703 sum 6.104 -4.683 -0.414 7.705 Atomic orbital electron populations 1.70030 1.07061 1.26761 1.52070 1.25686 0.95533 1.02049 0.95363 0.85761 0.78981 0.80362 0.77872 1.20491 1.21248 1.19425 1.21460 0.93053 0.91515 1.48739 0.92769 1.18593 0.92585 0.92351 0.92505 0.99107 1.21754 0.95884 0.89019 0.98894 1.58932 1.31386 1.39982 1.07093 1.20848 0.95144 0.97751 0.93505 0.92577 1.21554 0.97544 0.98155 0.97565 1.21611 0.97452 0.98588 0.97287 1.21960 0.94464 0.99710 0.90834 1.60316 1.19772 1.45987 1.06399 1.21741 0.93704 0.90692 0.98467 0.93370 0.95893 0.94050 0.85709 0.85548 0.93622 0.93808 0.90535 0.91700 0.88941 0.96308 0.83708 0.92203 0.96663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.55 11.52 21.45 0.25 -52.31 16 2 C 0.01 0.64 5.35 84.65 0.45 1.10 16 3 Si 0.94 43.44 29.54 68.60 2.03 45.47 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.51 -27.15 6.99 25.60 0.18 -26.97 16 8 H 0.05 2.88 5.70 -2.91 -0.02 2.86 16 9 C 0.06 2.92 1.71 -11.54 -0.02 2.90 16 10 H -0.01 -0.52 8.14 -2.39 -0.02 -0.53 16 11 C 0.08 3.53 5.82 86.30 0.50 4.03 16 12 N -0.85 -33.08 9.00 -186.71 -1.68 -34.77 16 13 C -0.05 -2.26 2.04 -10.74 -0.02 -2.29 16 14 H 0.06 2.44 7.69 -2.39 -0.02 2.42 16 15 C -0.11 -4.32 5.08 30.67 0.16 -4.17 16 16 C -0.11 -3.43 6.11 30.69 0.19 -3.24 16 17 C 0.06 1.72 6.55 86.37 0.57 2.28 16 18 N -0.69 -22.13 6.85 -513.76 -3.52 -25.65 16 19 C 0.08 3.24 5.24 86.33 0.45 3.69 16 20 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 21 H 0.02 1.23 6.25 -2.39 -0.01 1.21 16 22 H 0.04 1.94 6.29 -2.39 -0.02 1.93 16 23 H 0.33 12.81 8.99 -89.69 -0.81 12.00 16 24 H 0.33 11.31 9.08 -89.70 -0.81 10.50 16 25 H 0.05 1.95 6.72 -2.39 -0.02 1.93 16 26 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.34 9.29 8.90 -89.69 -0.80 8.49 16 32 H 0.06 2.42 6.42 -2.38 -0.02 2.40 16 33 H 0.02 0.65 6.44 -2.39 -0.02 0.64 16 Total: -1.00 -58.30 252.75 -1.77 -60.07 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -1.30 Total: 29.85 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 2.45 Total: -22.67 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -4.95 Total: -112.72 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -58.30 -1.77 -60.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635488.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.572 kcal (2) G-P(sol) polarization free energy of solvation -58.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds