Wall clock time and date at job start Mon Mar 30 2020 02:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00273 * 2 1 4 4 H 1.48504 * 109.47252 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47526 * 59.99899 * 3 2 1 6 6 H 1.48502 * 109.46986 * 299.99575 * 3 2 1 7 7 C 1.37884 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99725 * 187.73984 * 7 2 1 9 9 C 1.50699 * 120.00219 * 7.74073 * 7 2 1 10 10 H 1.08999 * 109.47111 * 304.35861 * 9 7 2 11 11 C 1.53011 * 109.46722 * 64.35534 * 9 7 2 12 12 N 1.46903 * 109.46801 * 65.25184 * 11 9 7 13 13 C 1.52994 * 109.47251 * 184.35604 * 9 7 2 14 14 H 1.09005 * 109.50164 * 299.23777 * 13 9 7 15 15 C 1.53117 * 109.50291 * 59.35664 * 13 9 7 16 16 C 1.53121 * 109.15765 * 177.59274 * 15 13 9 17 17 C 1.53036 * 109.28260 * 302.34674 * 16 15 13 18 18 N 1.46847 * 109.52028 * 59.18078 * 17 16 15 19 19 C 1.46846 * 111.19956 * 298.25783 * 18 17 16 20 20 H 0.96999 * 120.00251 * 184.13814 * 1 2 3 21 21 H 1.09000 * 109.46934 * 185.25014 * 11 9 7 22 22 H 1.08994 * 109.46767 * 305.25031 * 11 9 7 23 23 H 1.00901 * 110.99437 * 181.81580 * 12 11 9 24 24 H 1.00896 * 110.99734 * 305.76884 * 12 11 9 25 25 H 1.08995 * 109.52830 * 297.50037 * 15 13 9 26 26 H 1.09000 * 109.52159 * 57.69140 * 15 13 9 27 27 H 1.09002 * 109.50005 * 182.40513 * 16 15 13 28 28 H 1.09004 * 109.50205 * 62.29345 * 16 15 13 29 29 H 1.08998 * 109.45866 * 299.16651 * 17 16 15 30 30 H 1.08998 * 109.46137 * 179.19892 * 17 16 15 31 31 H 1.00900 * 111.00256 * 62.35604 * 18 17 16 32 32 H 1.09004 * 109.46461 * 301.72899 * 19 18 17 33 33 H 1.09003 * 109.46509 * 181.76052 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 1.2124 6 1 1.8905 2.3963 -1.2126 7 6 2.0045 -1.1942 0.0005 8 1 3.0771 -1.1984 0.1265 9 6 1.2613 -2.4934 -0.1747 10 1 0.4831 -2.5720 0.5845 11 6 0.6232 -2.5324 -1.5649 12 7 1.6780 -2.5531 -2.5872 13 6 2.2368 -3.6628 -0.0282 14 1 3.0076 -3.5920 -0.7958 15 6 2.8877 -3.6151 1.3569 16 6 3.8166 -4.8218 1.5174 17 6 3.0130 -6.1084 1.3156 18 7 2.4113 -6.1062 -0.0239 19 6 1.4791 -4.9831 -0.1853 20 1 -0.4850 -0.8378 0.0606 21 1 0.0095 -3.4283 -1.6579 22 1 0.0000 -1.6490 -1.7035 23 1 1.2820 -2.5491 -3.5153 24 1 2.3167 -1.7819 -2.4633 25 1 3.4644 -2.6956 1.4570 26 1 2.1141 -3.6463 2.1242 27 1 4.2503 -4.8166 2.5175 28 1 4.6127 -4.7695 0.7747 29 1 2.2259 -6.1666 2.0673 30 1 3.6745 -6.9691 1.4152 31 1 3.1222 -6.0917 -0.7397 32 1 0.6990 -5.0465 0.5735 33 1 1.0263 -5.0264 -1.1759 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260635489.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:01 Heat of formation + Delta-G solvation = -26.325735 kcal Electronic energy + Delta-G solvation = -13521.071518 eV Core-core repulsion = 11387.154642 eV Total energy + Delta-G solvation = -2133.916876 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.57595 -35.39782 -31.99186 -31.27398 -30.47041 -26.56791 -24.46865 -22.64511 -22.32300 -20.02970 -19.05010 -16.59837 -15.52275 -15.12256 -14.37003 -14.07944 -13.78096 -13.46984 -13.00931 -12.73051 -12.11673 -12.00810 -11.57656 -10.95946 -10.90327 -10.77860 -10.64556 -10.52487 -10.35740 -10.17069 -9.55377 -9.22583 -8.58976 -8.35301 -7.70857 -7.62254 -6.34044 -4.05718 3.40268 3.42011 3.55908 4.49505 4.79717 5.26032 5.35639 5.50258 5.57559 5.73697 5.89173 5.93621 6.02058 6.14155 6.28601 6.40097 6.50815 6.56503 6.66638 6.74930 7.01030 7.04754 7.09020 7.31108 7.49502 7.64815 7.81865 8.16077 8.28447 8.39294 8.52619 8.88268 9.63273 11.00797 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042429 B = 0.011578 C = 0.010154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.769565 B = 2417.883361 C = 2756.863467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.018 3.982 3 Si 1.064 2.936 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.584 4.584 8 H 0.050 0.950 9 C 0.041 3.959 10 H 0.016 0.984 11 C 0.063 3.937 12 N -0.842 5.842 13 C -0.091 4.091 14 H 0.069 0.931 15 C -0.106 4.106 16 C -0.158 4.158 17 C 0.058 3.942 18 N -0.690 5.690 19 C 0.061 3.939 20 H 0.271 0.729 21 H 0.034 0.966 22 H 0.029 0.971 23 H 0.314 0.686 24 H 0.346 0.654 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.336 0.664 32 H 0.057 0.943 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.794 -7.049 -0.273 8.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.186 4.186 3 Si 0.893 3.107 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.622 4.622 8 H 0.068 0.932 9 C 0.022 3.978 10 H 0.034 0.966 11 C -0.068 4.068 12 N -0.371 5.371 13 C -0.111 4.111 14 H 0.088 0.912 15 C -0.143 4.143 16 C -0.197 4.197 17 C -0.072 4.072 18 N -0.318 5.318 19 C -0.069 4.069 20 H 0.082 0.918 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.123 0.877 24 H 0.159 0.841 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.152 0.848 32 H 0.075 0.925 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.292 -6.581 0.185 7.859 hybrid contribution 0.391 0.205 -0.222 0.494 sum 4.683 -6.377 -0.037 7.912 Atomic orbital electron populations 1.70728 1.06922 1.30941 1.46447 1.25713 0.96505 1.02377 0.94044 0.83623 0.74688 0.75495 0.76892 1.21542 1.21594 1.21538 1.21989 0.94918 0.91683 1.53643 0.93202 1.18814 0.94008 0.93618 0.91357 0.96555 1.21888 0.92755 0.97421 0.94750 1.58866 1.20734 1.53008 1.04467 1.21535 0.98807 0.95042 0.95694 0.91232 1.21544 0.98042 0.96744 0.97988 1.22315 0.99035 0.97425 1.00943 1.21960 0.97315 0.96017 0.91889 1.60786 1.21628 1.45500 1.03860 1.22155 0.94789 0.88502 1.01404 0.91772 0.94798 0.95239 0.87676 0.84071 0.91367 0.93270 0.92659 0.92654 0.91607 0.91885 0.84790 0.92486 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.56 12.81 55.43 0.71 -25.85 16 2 C 0.02 0.48 5.18 -17.82 -0.09 0.39 16 3 Si 1.06 24.65 29.91 -169.99 -5.08 19.57 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.58 -15.28 6.72 -34.44 -0.23 -15.51 16 8 H 0.05 1.33 6.85 -52.49 -0.36 0.97 16 9 C 0.04 0.98 1.35 -91.77 -0.12 0.86 16 10 H 0.02 0.43 7.50 -51.93 -0.39 0.04 16 11 C 0.06 1.41 5.69 -3.82 -0.02 1.38 16 12 N -0.84 -16.78 8.63 -10.36 -0.09 -16.87 16 13 C -0.09 -1.84 1.67 -90.54 -0.15 -1.99 16 14 H 0.07 1.49 7.44 -51.93 -0.39 1.11 16 15 C -0.11 -2.05 4.97 -26.61 -0.13 -2.18 16 16 C -0.16 -2.49 6.08 -26.65 -0.16 -2.65 16 17 C 0.06 0.86 6.55 -3.83 -0.03 0.84 16 18 N -0.69 -11.14 6.87 -113.82 -0.78 -11.92 16 19 C 0.06 1.11 5.48 -3.83 -0.02 1.09 16 20 H 0.27 7.88 6.21 -40.82 -0.25 7.63 16 21 H 0.03 0.71 6.76 -51.93 -0.35 0.36 16 22 H 0.03 0.74 6.27 -51.93 -0.33 0.42 16 23 H 0.31 5.52 9.08 -39.29 -0.36 5.16 16 24 H 0.35 7.35 8.04 -39.29 -0.32 7.03 16 25 H 0.07 1.45 6.76 -51.93 -0.35 1.10 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.34 5.14 8.86 -39.29 -0.35 4.80 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 LS Contribution 252.49 15.07 3.81 3.81 Total: -1.00 -27.43 252.49 -7.52 -34.94 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -5.11 Total: 14.10 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -0.96 Total: -17.78 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.16 Total: -54.64 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.08 Total: 19.57 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.43 -7.52 -34.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635489.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.617 kcal (2) G-P(sol) polarization free energy of solvation -27.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds